DY305160

Overview
NameDY305160
Unique NameDY305160
TypeEST
OrganismCitrus clementina (Clementine)
Sequence length911
Libraries
Library NameType
PhII-III-Vesicles1cdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Alignments
Feature NameTypeLocationAnalysis
DY305160_ssr148 microsatellite DY305160_ssr148:148..159. BLAST: Citrus ESTs to Prunus persica proteins V1
Ccv1_Contig9264 contig Ccv1_Contig9264:1..911. BLAST: Citrus Unigene V1 Contigs to Prunus persica proteins V1
Homology
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BLAST of DY305160 vs. ExPASy Swiss-Prot
Match: FTRV_MAIZE (Ferredoxin-thioredoxin reductase, variable chain OS=Zea mays PE=1 SV=1)

HSP 1 Score: 99.7525 bits (247), Expect = 2.363e-20
Identity = 45/75 (60.00%), Postives = 60/75 (80.00%), Query Frame = 2 
Query:  500 KIGARVKVKVPLKVYHVPRVPELDLSGMEGVLKQYVGVWKGKKISANLPYKVAFVTEIEG--RTVKFFAHLKDDE 718
            KIG RV+V  PL+VYHV + P+LD+ GMEGV+KQYV VWKGK+++AN P+KV F   +EG  + V+FFAHL++DE
Sbjct:   17 KIGRRVRVTAPLRVYHVLKAPDLDIQGMEGVVKQYVCVWKGKRVTANFPFKVEFELAVEGQPKPVRFFAHLREDE 91
[Close]
BLAST of DY305160 vs. ExPASy Swiss-Prot
Match: FTRV_SPIOL (Ferredoxin-thioredoxin reductase, variable chain, chloroplastic OS=Spinacia oleracea GN=FTRV PE=1 SV=2)

HSP 1 Score: 93.2041 bits (230), Expect = 2.212e-18
Identity = 51/111 (45.95%), Postives = 70/111 (63.06%), Query Frame = 2 
Query:  392 ISCEVAVKSNNSTASVGLEXXXXXXXXXXDDGFDESKIGARVKVKVPLKVYHVPRVPELDLS-GMEGVLKQYVGVWKGKKISANLPYKVAFVTEIEGR-TVKFFAHLKDDE 718
            I CEVA+KS++ST                    +  K+G +VKVK PLKVYHVP++PE++L+  M GV+KQYVG WKGK IS N P+KV +  ++  R +VK   HLK++E
Sbjct:   60 ICCEVALKSDSSTGFDSSSSSPPEEDEELKKNLE--KVGCKVKVKSPLKVYHVPKLPEVELTPDMVGVIKQYVGFWKGKYISPNYPFKVEYRIDVPDRGSVKLVVHLKEEE 168
The following BLAST results are available for this feature:
BLAST of DY305160 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 2
Match NameE-valueIdentityDescription
FTRV_MAIZE2.363e-2060.00Ferredoxin-thioredoxin reductase, variable chain O... [more]
FTRV_SPIOL2.212e-1845.95Ferredoxin-thioredoxin reductase, variable chain, ... [more]
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Properties
Property NameValue
Genbank descriptionKN0AAH2CG12RM1 PhII-III-Vesicles1 Citrus clementina cDNA 5, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>DY305160 ID=DY305160; Name=DY305160; organism=Citrus clementina; type=EST; length=911bp
TGCCGAATTCGGCACGAGGAGGAGAGGATGTATACGATCTAGAGTGTTAT
TCATTCGACACGTGTGCAATAGAGACGAAAGTCCGTTGCCATCGTCTTAG
CTCGCCTTAGCCACTGAGGCCTGAGATAGTGGTTCAATAGAAAAATCAAT
AATAATAATAAAAAAAAGAGTAAAGGTTGGGTAATATCATTATTATTATA
TGATTATTTTGTGAGAATTAGCAGACGAGTGAAAAGATAGATACACAGAA
ATCATGACTAGTACAAGTTTTGCTTTGTCCTCGGCTACTTCTTCGTTGAT
AAATCGACGGCCACTTGCGAATGCGTTTGTCTCAGTTTCTTCATTTTCAG
CTGCCAATTGTAATTACAATGTTAATGTTAACAAAAGAAGAATCTCCTGT
GAAGTAGCTGTAAAATCCAACAATTCAACGGCATCCGTAGGACTAGAGAG
CAGTCCATCTTCATCAGCATCAGCGTCGGATGATGGCTTTGATGAGTCTA
AGATTGGTGCGAGGGTTAAGGTGAAGGTGCCGTTGAAGGTTTACCATGTT
CCTAGGGTTCCGGAGCTTGATCTGTCTGGCATGGAAGGTGTGCTCAAGCA
ATACGTCGGCGTTTGGAAAGGAAAGAAAATCTCAGCCAATCTGCCTTATA
AGGTAGCGTTTGTTACTGAAATTGAAGGCCGTACTGTCAAGTTCTTTGCA
CATCTCAAGGATGATGAGTTTGATTACCTTGATTAATATTTTTAAATTTT
TATTATTTTGAACATGTTATTCCTTCTCTTTCCTATCTCTATCCTCTACA
AATAATATTTTTAGTCTTTGTATGTAACTCTTCACATGAGATTATGCTTC
TTAGTGTTTTTATTGTTATACTTTCTCTTGCTATATAATCAATCATTTCT
ATATTTCTTTC
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