DY305164

Overview
NameDY305164
Unique NameDY305164
TypeEST
OrganismCitrus clementina (Clementine)
Sequence length1274
Libraries
Library NameType
PhII-III-Vesicles1cdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Alignments
Feature NameTypeLocationAnalysis
Ccv1_Contig11159 contig Ccv1_Contig11159:563..1837. BLAST: Citrus Unigene V1 Contigs to Prunus persica proteins V1
Homology
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BLAST of DY305164 vs. ExPASy Swiss-Prot
Match: ESCA_ARATH (Putative DNA-binding protein ESCAROLA OS=Arabidopsis thaliana GN=ESC PE=2 SV=1)

HSP 1 Score: 77.411 bits (189), Expect = 2.007e-13
Identity = 61/162 (37.65%), Postives = 85/162 (52.47%), Query Frame = 2 
Query:  458 RPKRSPASDSQAL-KRSRGRPPGTGRKQQLATLGEWMNSSAGIAFAPHVISIGVGEDIVAKMLSFSQQRPRVVCILSGRGTVSSVTLRQPAT---------SVPTVTYEGRFEILCLSGSFLLAEDGNPRDRTGGVSASLSVLMVT*FGGG-VAVVIATSPV 910
            RP   P + S A  KR RGRPPG+  K +   +   +   +  A   HV+ +  G DIV  + +++++R R V +L G GTVS+VTLRQP T             VT  GRFEIL L+G+ +L     P    GG+S  L+       GG  VA +IA++PV
Sbjct:   72 RPDSDPNTSSSAPGKRPRGRPPGSKNKAKPPII---VTRDSPNALRSHVLEVSPGADIVESVSTYARRRGRGVSVLGGNGTVSNVTLRQPVTPGNGGGVSGGGGVVTLHGRFEILSLTGT-VLPPPAPP--GAGGLSIFLAGGQGQVVGGSVVAPLIASAPV 227
The following BLAST results are available for this feature:
BLAST of DY305164 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 1
Match NameE-valueIdentityDescription
ESCA_ARATH2.007e-1337.65Putative DNA-binding protein ESCAROLA OS=Arabidops... [more]
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Properties
Property NameValue
Genbank descriptionKN0AAH2CH05RM1 PhII-III-Vesicles1 Citrus clementina cDNA 5, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>DY305164 ID=DY305164; Name=DY305164; organism=Citrus clementina; type=EST; length=1274bp
GGTGTTAGGGAGATCAGGATCTTGTGTGTATTTAGTTTAAGATTTTAGCT
TAAGTGGCTTAATAGACTCATTTTCTAGCTACCCAAAAAGAAAAAAAATT
CATTTTCTACTTAGTAAATGCATGGACGGAAGAGAAGCTATGGTTGCATC
AGGGGGTGTCTCTGGTCCCTATTACATTCAACAACATAGAGGAGCATTCA
GTGGTTCTCATTCAGCAACACAATCTGGTTTAATGCAAACCCCACCTGGG
TTTAGATCCTCGTCAAATCTTAACATTCCAACTCAACCAAATGTGGGATC
GACATTTGCAGTTGAGCCCAAACATGTCAATTTTGGCCATAACATGAGTG
TGCCATCCGGGGTGCCACTAAGTGATCCAGTGAAGAAGAAGAGAGGTAGA
CCCCGCAAATATGCCCCTGATGGGCAGGTTTCCTTGGGGCTTTCGCCATT
GCCAGCCAGGCCAAAGCGTTCTCCGGCATCTGATTCGCAGGCCTTGAAAC
GGAGTAGAGGGCGGCCTCCTGGGACAGGCAGGAAGCAGCAGTTGGCTACT
CTTGGTGAATGGATGAATAGTTCAGCTGGAATTGCTTTTGCACCGCATGT
GATCTCCATTGGAGTTGGAGAGGACATTGTGGCTAAAATGTTGTCATTTT
CACAACAGAGGCCAAGGGTTGTGTGCATCTTGTCAGGCCGTGGTACAGTT
TCTTCAGTAACACTCCGTCAGCCTGCAACTTCAGTGCCCACCGTCACCTA
TGAGGGCCGTTTCGAGATATTATGCCTGTCTGGTTCATTCTTACTTGCTG
AAGATGGCAATCCTCGTGATCGAACTGGTGGTGTAAGTGCTTCCCTTTCA
GTCCTGATGGTCACGTAATTCGGGGGTGGAGTTGCTGTGGTTATCGCAAC
AAGCCCAGTTCAGGTGGGTGGTAAGCAAGTTTTGTAAATGGGGGGTTTTA
AAAATAAAAACCAAGCAAGTTGCCTCCCCCTGAAAATGAAAAAAAATTCC
TACCCCCGCCACCCAAGAAAATAAAATCAACCTACCCAAAATATATCCCC
CCTGGCCCCCCCAAAAATTTTCCCCCCCCCCCCCAAAGAGAAAGGGCCGG
GCCCCCGGTTTTTTCAAAAAAACCGTGAATTGGGAAAAAAAACCCCCCCC
CCCCAAAATATATTGTCACCCTAAAAAACTCCGCGGGGGAAAAAAAAAAA
ATTTTTTCTCCTGGCGGCCACAAACCACAACAAACAAGGGGGGGGGTGGT
TTTTTTTTTGTGGTATACTACAAA
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