DY305176

Overview
NameDY305176
Unique NameDY305176
TypeEST
OrganismCitrus clementina (Clementine)
Sequence length1262
Libraries
Library NameType
PhII-III-Vesicles1cdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
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BLAST of DY305176 vs. ExPASy Swiss-Prot
Match: ESCA_ARATH (Putative DNA-binding protein ESCAROLA OS=Arabidopsis thaliana GN=ESC PE=2 SV=1)

HSP 1 Score: 82.8037 bits (203), Expect = 4.714e-15
Identity = 58/154 (37.66%), Postives = 80/154 (51.95%), Query Frame = 2 
Query:  458 RPKRSPASDSQAL-KRSRGRPPGTGRKQQLATLGEWMNSSAGIAFAPHVISIGVGEDIVAKMLSFSQQRPRVVCILSGRGTVSSVTLRQPAT---------SVPTVTYEGRFEILCLSGSFL--PAEDGSPRDRTGGVNASLFSPDGHVFGGGI 883
            RP   P + S A  KR RGRPPG+  K +   +   +   +  A   HV+ +  G DIV  + +++++R R V +L G GTVS+VTLRQP T             VT  GRFEIL L+G+ L  PA  G+     GG++  L    G V GG +
Sbjct:   72 RPDSDPNTSSSAPGKRPRGRPPGSKNKAKPPII---VTRDSPNALRSHVLEVSPGADIVESVSTYARRRGRGVSVLGGNGTVSNVTLRQPVTPGNGGGVSGGGGVVTLHGRFEILSLTGTVLPPPAPPGA-----GGLSIFLAGGQGQVVGGSV 217
The following BLAST results are available for this feature:
BLAST of DY305176 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 1
Match NameE-valueIdentityDescription
ESCA_ARATH4.714e-1537.66Putative DNA-binding protein ESCAROLA OS=Arabidops... [more]
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Properties
Property NameValue
Genbank descriptionKN0AAH2DA12RM1 PhII-III-Vesicles1 Citrus clementina cDNA 5, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>DY305176 ID=DY305176; Name=DY305176; organism=Citrus clementina; type=EST; length=1262bp
GGTGTTAGGGAGATCAGGATCTTGTGTGTATTTAGTTTAAGATTTTAGCT
TAAGTGGCTTAATAGACTCATTTTCTAGCTACCCAAAAAGAAAAAAAATT
CATTTTCTACTTAGTAAATGCATGGACGGAAGAGAAGCTATGGTTGCATC
AGGGGGTGTCTCTGGTCCCTATTACATTCAACAACATAGAGGAGCATTCA
GTGGTTCTCATTCAGCAACACAATCTGGTTTAATGCAAACCCCACCTGGG
TTTAGATCCTCGTCAAATCTTAACATTCCAACTCAACCAAATGTGGGATC
GACATTTGCAGTTGAGCCCAAACATGTCAATTTTGGCCATAACATGAGTG
TGCCATCCGGGGTGCCACTAAGTGATCCAGTGAAGAAGAAGAGAGGTAGA
CCCCGCAAATATGCCCCTGATGGGCAGGTTTCCTTGGGGCTTTCGCCATT
GCCAGCCAGGCCAAAGCGTTCTCCGGCATCTGATTCGCAGGCCTTGAAAC
GGAGTAGAGGGCGGCCTCCTGGGACAGGCAGGAAGCAGCAGTTGGCTACT
CTTGGTGAATGGATGAATAGTTCAGCTGGAATTGCTTTTGCACCGCATGT
GATCTCCATTGGAGTTGGAGAGGACATTGTGGCTAAAATGTTGTCATTTT
CACAACAGAGGCCAAGGGTTGTGTGCATCTTGTCAGGCCGTGGTACAGTT
TCTTCAGTAACACTCCGTCAGCCTGCAACTTCAGTGCCCACCGTCACCTA
TGAAGGCCGTTTCGAGATATTATGCCTGTCTGGTTCATTCTTACCTGCTG
AAGATGGCAGTCCTCGTGATCGAACTGGTGGTGTAAATGCTTCCCTTTTC
AGTCCTGATGGTCACGTATTCGGTGGGGGAATTGCCTGTGCTTATCGCAA
CAAGCCCAATTTCAGGTGGGGGGTATGCAGTTTTGGAATATGGGGGGTTC
CAAAAATCAGAACCAAACCATTTGGCTCCCCCCTGAAAATGACAAAAATT
CCAACCCCCCCCCCCCAAATAAAAAAATCACCCTACCCCAAATTTTATCC
ACCCCCGCCCCCCCAAATTTTTTCCCCCCCTCCCCACAAGAAAAAGGCCC
GGGTCTCCGGGTTTTTCCCAAACACACCCTAATCTTCGAAAAAAACACCC
CCCCACCCCCAAAAATTATTTGAAACCCCTTGCAACCCCTCGTTGGGAAA
ATAAAAAAAAAATTTTTTGTCTCCTCTGCCCCCCACAAAAAAACCCCCCC
CCCGCGCGTGGT
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