DY305189

Overview
NameDY305189
Unique NameDY305189
TypeEST
OrganismCitrus clementina (Clementine)
Sequence length1267
Libraries
Library NameType
PhII-III-Vesicles1cdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Alignments
Feature NameTypeLocationAnalysis
DY305189_ssr291 microsatellite DY305189_ssr291:291..302. BLAST: Citrus ESTs to Prunus persica proteins V1
Homology
BLAST of DY305189 vs. ExPASy Swiss-Prot
Match: FBK15_ARATH (F-box/kelch-repeat protein At1g26930 OS=Arabidopsis thaliana GN=At1g26930 PE=2 SV=1)

HSP 1 Score: 161.77 bits (408), Expect = 5.053e-43
Identity = 74/146 (50.68%), Postives = 100/146 (68.49%), Query Frame = 3
Query:  369 SDSLLPGLVDDVALNCLAFACTSDYASLLFINKRFHKLIKSGYLYGLRKQLGIVEHWVYLVCDPRGWEAFDPMKKKWMALPKIPCDECFNHADKESLAVGSELLVFGRELFDFAIWKYSLVFRSWMKCEGMNHPRCLFGSSSLGSI 806
            S +L+PG+  D +L+CL     +DY S+  +N+    LI+SG +Y LR+  G +EHWVY  C    WEAFDP  K+WM LP +P +ECF +ADKESLAVG++LLVFG E+  + I++YSL+  SW   + MN PRCLFGS+S G I
Sbjct:   68 SGTLIPGMNRDDSLSCLIRCSRADYCSIASVNRSLRSLIRSGEIYRLRRLQGTLEHWVYFSCHLNEWEAFDPRSKRWMHLPSMPQNECFRYADKESLAVGTDLLVFGWEVSSYVIYRYSLLTNSWSTAKSMNMPRCLFGSASYGEI 213          

HSP 2 Score: 35.4242 bits (80), Expect = 5.053e-43
Identity = 17/40 (42.50%), Postives = 22/40 (55.00%), Query Frame = 1
Query:  820 GGSDKNGHVLKSAELYEPPTGRWEMLPNKPSPPKMGSGLF 939
            GG D +G +L +AELY      W +LP      KM SG+F
Sbjct:  218 GGCDSSGRILDTAELYNYEDQTWLVLPGMNKRRKMCSGVF 257          
BLAST of DY305189 vs. ExPASy Swiss-Prot
Match: FBK29_ARATH (F-box/kelch-repeat protein At1g74510 OS=Arabidopsis thaliana GN=At1g74510 PE=2 SV=1)

HSP 1 Score: 146.362 bits (368), Expect = 3.774e-40
Identity = 69/139 (49.64%), Postives = 91/139 (65.47%), Query Frame = 3
Query:  390 LVDDVALNCLAFACTSDYASLLFINKRFHKLIKSGYLYGLRKQLGIVEHWVYLVCDPRGWEAFDPMKKKWMALPKIPCDECFNHADKESLAVGSELLVFGRELFDFAIWKYSLVFRSWMKCEGMNHPRCLFGSSSLGSI 806
            L  +  LNCLA    SD+ S+   N+ F  LIK   LY LR+  GIVEHW+Y  C    WEA+DP   +W+ +PK+  +ECF  +DKESLAVG+ELLVFG+E+    I++YS++  +W     MN PRCLFGS+SLG I
Sbjct:   99 LDQNALLNCLAHCSLSDFGSIASTNRTFRSLIKDSELYRLRRAKGIVEHWIYFSCRLLEWEAYDPNGDRWLRVPKMTFNECFMCSDKESLAVGTELLVFGKEIMSHVIYRYSILTNTWTSGMQMNVPRCLFGSASLGEI 237          

HSP 2 Score: 41.2022 bits (95), Expect = 3.774e-40
Identity = 18/40 (45.00%), Postives = 23/40 (57.50%), Query Frame = 1
Query:  820 GGSDKNGHVLKSAELYEPPTGRWEMLPNKPSPPKMGSGLF 939
            GG D  G +L SAELY   TG W ++P+     KM S +F
Sbjct:  242 GGCDPRGRILSSAELYNSETGEWTVIPSMNKARKMCSSVF 281          
BLAST of DY305189 vs. ExPASy Swiss-Prot
Match: SKI11_ARATH (F-box/kelch-repeat protein SKIP11 OS=Arabidopsis thaliana GN=SKIP11 PE=1 SV=2)

HSP 1 Score: 145.976 bits (367), Expect = 1.532e-38
Identity = 74/159 (46.54%), Postives = 99/159 (62.26%), Query Frame = 3
Query:  342 NDGCCRIGPSDSLLPGLVDDVALNCLAFACTSDYASLLFINKRFHKLIKSGYLYGLRKQLGIVEHWVYLVCDPRGWEAFDPMKKKWMALPKIPCDECFNHADKESLAVGSELLVFGRELF-DFAIWKYSLVFRSWMKCEGMNHPRCLFGSSSLGSIGCY 815
            ND       S SL+  +  D +++CL     SDY S+  +N+ F  L+KSG +Y LR+Q G VEHWVY  C    W AFDP++++WM LP +P    F  ADKESLAVG++LLV G++ F    I++YSL+  SW     MN PRCLFGS+SLG I  +
Sbjct:  105 NDNGGDSSDSHSLINEIGRDNSIDCLIRCSRSDYGSIASLNRNFRSLVKSGEIYRLRRQNGFVEHWVYFSCQLLEWVAFDPVERRWMQLPTMPSSVTFMCADKESLAVGTDLLVLGKDDFSSHVIYRYSLLTNSWSSGMKMNSPRCLFGSASLGEIAIF 263          

HSP 2 Score: 36.1946 bits (82), Expect = 1.532e-38
Identity = 17/40 (42.50%), Postives = 20/40 (50.00%), Query Frame = 1
Query:  820 GGSDKNGHVLKSAELYEPPTGRWEMLPNKPSPPKMGSGLF 939
            GG D  G +L  AE+Y      W  LP    P KM SG+F
Sbjct:  265 GGCDSQGKILDFAEMYNSELQTWITLPRMNKPRKMCSGVF 304          
BLAST of DY305189 vs. ExPASy Swiss-Prot
Match: FBK70_ARATH (F-box/kelch-repeat protein At3g27150 OS=Arabidopsis thaliana GN=At3g27150 PE=2 SV=1)

HSP 1 Score: 95.9005 bits (237), Expect = 5.399e-19
Identity = 51/143 (35.66%), Postives = 79/143 (55.24%), Query Frame = 3
Query:  381 LPGLVDDVALNCLAFACTSDYASLLFINKRFHKLIKSGYLYGLRKQLGIVEHWVYLVCD-PRGWEAFDPMKKKWMALPKIPCDECFNHADKESLAVGSELLVFGRELFDFAIWKYSLVFRSWMKCEGMNHPRCLFGSSSLGSI 806
            +P LV ++ +  LA     +Y  L  +NK F +L+KS  ++ +R++ G+VE  V+++      W  FD        LP++P D CF H DKESL  G+ L+V G+E    A+W+Y L    W K   M  PR LF S++ G++
Sbjct:   71 VPQLVYELEVEILARVPRFEYWKLKLLNKGFSRLLKSDEIFKVRRERGVVEPSVFMLSSGDTCWTMFDKGFGNCQKLPELPSDICFLHGDKESLCAGTHLIVTGKEEKSIALWRYELETSKWFKGPAMITPRILFASATCGTV 213          
The following BLAST results are available for this feature:
BLAST of DY305189 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 4
Match NameE-valueIdentityDescription
FBK15_ARATH5.053e-4350.68F-box/kelch-repeat protein At1g26930 OS=Arabidopsi... [more]
FBK29_ARATH3.774e-4049.64F-box/kelch-repeat protein At1g74510 OS=Arabidopsi... [more]
SKI11_ARATH1.532e-3846.54F-box/kelch-repeat protein SKIP11 OS=Arabidopsis t... [more]
FBK70_ARATH5.399e-1935.66F-box/kelch-repeat protein At3g27150 OS=Arabidopsi... [more]
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Properties
Property NameValue
Genbank descriptionKN0AAH2DD03RM1 PhII-III-Vesicles1 Citrus clementina cDNA 5, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>DY305189 ID=DY305189; Name=DY305189; organism=Citrus clementina; type=EST; length=1267bp
GGAGAGATGCTTATAAATGAGTCATGTGCTAAGTTTTATGGAAAGAATAT
ATAGGCTGGAGGTTCATTGTGTGCAAAGATCGGAATTTGTTTTCTGGTTA
TTGGGAGCGTCATTGAGAATTGTGGGTTGACACTTTCTTTTATCTTTTTA
AATTTTAATCAAGATTGACTTTTTTTTTTTTATAGAAATTTTGCTTGATT
TTGTTGGATTATAGGAAAAGAATTTTTTTTCTCCCTTTTAACATGATAAA
GAAAGCGCGTTTGGATGATATTATGGAGGAAGTAGAAAAGGAAGAAGAAG
AAGCAGCTAGTTTATCAGTAGTGAGTTGGAAAGCGGGAGTGAATGATGGT
TGTTGTCGGATTGGACCAAGTGATTCACTTCTCCCTGGTCTTGTTGATGA
TGTTGCTTTGAACTGTCTTGCTTTTGCATGTACATCCGACTATGCATCAT
TGTTATTTATAAATAAGAGGTTTCATAAGTTAATCAAGAGTGGGTATTTG
TATGGGTTAAGGAAGCAATTGGGTATTGTGGAGCATTGGGTCTACTTGGT
TTGTGATCCACGGGGTTGGGAGGCATTCGATCCAATGAAAAAGAAGTGGA
TGGCTTTGCCTAAGATCCCTTGTGATGAGTGTTTCAACCATGCAGATAAA
GAGTCCTTGGCTGTGGGTAGTGAATTGTTGGTTTTTGGGCGTGAATTGTT
TGATTTTGCAATTTGGAAGTATAGCTTGGTTTTCCGTAGTTGGATGAAGT
GTGAGGGAATGAACCACCCTCGTTGCTTGTTTGGCTCAAGTAGTCTTGGT
TCTATTGGCTGTTATTGCAGGTGGCAGTGATAAGAACGGGCATGTTTTAA
AATCTGCTGAATTATATGAACCCCCAACAGGCAGATGGGAAATGTTACCC
AACAAGCCTTCCCCCCCGAAAATGGGGTCCGGGCTTTTTTCTGGATGGGA
AAATCCTTTGTGATGGGGGGAAAGGCCAAGGCCCCCCCGTTTCCTTGACC
TGTGGGGGAGAAATTTGTTTTTTAAAAACCCGAAAAAGGAAGGAAAAAAA
AAAAGGGAAGTTCCCCAAATTGCCAATAGGGCCTGCCCACGGCCCCCCCC
CCCCCCCTTTGCCCTTTTGGGGAAAAATTCCTTTTTTATGTGCCCGGTTG
TAAAATTTTTTTAACAAAAACACTTGGGCCCAAAAAAAAAATTATTAAAA
AAAAAATATTTTAAAAAAAAAAAACCCCCCGCGGGGGGGAGAAAGTTTTG
GTGGGTGGGGTGGGAAA
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