DY305196

Overview
NameDY305196
Unique NameDY305196
TypeEST
OrganismCitrus clementina (Clementine)
Sequence length1114
Libraries
Library NameType
PhII-III-Vesicles1cdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Alignments
Feature NameTypeLocationAnalysis
DY305196_ssr13 microsatellite DY305196_ssr13:13..22. BLAST: Citrus ESTs to Prunus persica proteins V1
Homology
BLAST of DY305196 vs. ExPASy Swiss-Prot
Match: E13L3_ARATH (Glucan endo-1,3-beta-glucosidase-like protein 3 OS=Arabidopsis thaliana GN=At5g08000 PE=1 SV=1)

HSP 1 Score: 90.5077 bits (223), Expect = 1.923e-17
Identity = 51/159 (32.08%), Postives = 71/159 (44.65%), Query Frame = 1
Query:  163 YLSSLASMGIQVQIWCVCKYGMCDPDIEKALDYACGTGANCIPILSNGPCYHPSSVGSQCSYAVHSYFQTIAQTQSSCDFSXXXXXXXXXXXXXXCSYP*FAVTSGXXXXXXXXXXXXXXXXXXXXXXXXXXXNRSSNTTSGITPMGSTTPYSRSPSSG 639
            YL +L   G     WCVCK G+ D  ++K LDYACG GA+C P    G C++P +V + C+YAV+S+FQ   Q   SC+F+              C++P  A  S                            N    + S  T  G  +PYS +PS+G
Sbjct:    7 YLLTLLMAGHTSASWCVCKTGLSDSVLQKTLDYACGNGADCNPTHPKGSCFNPDNVRAHCNYAVNSFFQKKGQASESCNFTGTATLTTTDPSYTGCAFPSSASGSS----------------GSGSTTVTPGKNSPKGSNSITTFPGGNSPYSGTPSTG 149          
BLAST of DY305196 vs. ExPASy Swiss-Prot
Match: E13L2_ARATH (Glucan endo-1,3-beta-glucosidase-like protein 2 OS=Arabidopsis thaliana GN=At5g61130 PE=1 SV=1)

HSP 1 Score: 86.2705 bits (212), Expect = 3.627e-16
Identity = 51/164 (31.10%), Postives = 75/164 (45.73%), Query Frame = 1
Query:  148 MIGSFYLSSLASMGIQVQIWCVCKYGMCDPDIEKALDYACGTGANCIPILSNGPCYHPSSVGSQCSYAVHSYFQTIAQTQSSCDFSXXXXXXXXXXXXXXCSYP*FAVTSGXXXXXXXXXXXXXXXXXXXXXXXXXXXNRSSNTTSGITPMGSTTPYSRSPSSG 639
            ++ S  L SLA  G     WCVCK G+ D  ++  LDYACG GA+C P      C++P +V S C+YAV+S+FQ   Q+  SC+F               C++P  A  S                             + S TT+ +   G+ +PYS +P++G
Sbjct:    4 LVLSLLLLSLA--GHSSASWCVCKTGLSDTVLQATLDYACGNGADCNPTKPKQSCFNPDNVRSHCNYAVNSFFQKKGQSPGSCNFDGTATPTNSDPSYTGCAFPTSASGSSGSTTVTPGTTNP----------------KGSPTTTTLPGSGTNSPYSGNPTNG 149          
BLAST of DY305196 vs. ExPASy Swiss-Prot
Match: E13L4_ARATH (Glucan endo-1,3-beta-glucosidase-like protein At1g69295 OS=Arabidopsis thaliana GN=At1g69295 PE=2 SV=1)

HSP 1 Score: 70.8626 bits (172), Expect = 1.577e-11
Identity = 30/67 (44.78%), Postives = 46/67 (68.66%), Query Frame = 1
Query:  205 WCVCKYGMCDPDIEKALDYACGTGANCIPILSNGPCYHPSSVGSQCSYAVHSYFQTIAQTQSSCDFS 405
            +C+CK G  +  ++KA+DYACG GA+C  I   G CY P++V + C  AV+SY+Q  A + ++CDF+
Sbjct:   21 YCLCKEGN-EQVLQKAIDYACGNGADCTQIQPTGACYQPNTVKNHCDVAVNSYYQKKASSGATCDFN 86          
The following BLAST results are available for this feature:
BLAST of DY305196 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 3
Match NameE-valueIdentityDescription
E13L3_ARATH1.923e-1732.08Glucan endo-1,3-beta-glucosidase-like protein 3 OS... [more]
E13L2_ARATH3.627e-1631.10Glucan endo-1,3-beta-glucosidase-like protein 2 OS... [more]
E13L4_ARATH1.577e-1144.78Glucan endo-1,3-beta-glucosidase-like protein At1g... [more]
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Properties
Property NameValue
Genbank descriptionKN0AAH2DE02RM1 PhII-III-Vesicles1 Citrus clementina cDNA 5, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>DY305196 ID=DY305196; Name=DY305196; organism=Citrus clementina; type=EST; length=1114bp
GGAACTTTTTCATCTCTCTCTCAGTCCCTCACATAGGTCTCTTCTTAGCT
GCTGTGTGTGTTGAGACTAACTTTTCACGGACCCAAACAACCGAGGATTT
GTTATTATGATCACTTCGCTAAACTTCTTTTGCTCATTCTCTGATGGATG
ATTGGGAGCTTTTATCTCTCTTCCTTGGCTTCTATGGGCATTCAAGTGCA
AATCTGGTGTGTTTGCAAATATGGAATGTGTGACCCAGATATAGAAAAAG
CTTTGGACTATGCTTGTGGAACTGGCGCTAATTGCATCCCTATCCTTTCC
AATGGGCCTTGTTACCACCCCTCCAGTGTCGGATCACAGTGCAGTTATGC
TGTCCACAGCTATTTCCAGACAATAGCTCAAACTCAAAGCTCTTGTGATT
TTTCCTGAACTGCAGCCGGTGCCACTAATAATCCCAACACTGCTGGATGT
TCTTATCCTTAATTTGCCGTCACTTCAGGCACAATGTCAATATCACCAAT
CACATGGACTCCATGAACAATCACACCCACAACAACTCCATCCACTACCG
CTCACACTACTAACAGATCAAGCAACACCACTTCTGGCATCACTCCTATG
GGCAGCACCACTCCATACTCCAGATCACCATCTTCTGGAACTGGACTGAT
GAGAGGATTTGGTCCTGGTTCATGCCCTTCCGGATCTGGAATGCGCAACA
CAGACTATAATCATGGTGCGATCATACTGCTAAAATCTGCCATGTCATTG
ATGGTCGTCCTCATGTTCGCATGCTCGACGCTCTTGTGAAGATGAAAAAA
ACACTCAAAATGACATCTACTAAGACGGATATGTCGTACTATAGTCAGAT
GCCATTGAAGCTGGATCTTCATGTACAAAGATGGGATTAGGGAAGTCGAT
GGGGTTGTAATTTTTCAAAGACCTCTTAAATATCTCGCCTAAGTTTCTTT
TTCTTTTCTTCTTCTACTTCCCAAAAAAAAACCATAACCTTTTTTTCCCC
TTCCGGAAAGGGAAAGGAACGGTTTCCCCCCTTTATAAATTTTTTTTTAT
TTTTGGTTTTTAAATTTTTTTTATACTCAAAAACCTTTTTTTTTTTCCCC
TTTTCGCGGGAAAT
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