DY305217

Overview
NameDY305217
Unique NameDY305217
TypeEST
OrganismCitrus clementina (Clementine)
Sequence length1116
Libraries
Library NameType
PhII-III-Vesicles1cdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Alignments
Feature NameTypeLocationAnalysis
DY305217_ssr13 microsatellite DY305217_ssr13:13..22. BLAST: Citrus ESTs to Prunus persica proteins V1
Homology
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BLAST of DY305217 vs. ExPASy Swiss-Prot
Match: E13L2_ARATH (Glucan endo-1,3-beta-glucosidase-like protein 2 OS=Arabidopsis thaliana GN=At5g61130 PE=1 SV=1)

HSP 1 Score: 63.1586 bits (152), Expect = 2.629e-16
Identity = 29/78 (37.18%), Postives = 45/78 (57.69%), Query Frame = 1 
Query:  265 CGTGANCNPILSNGPCYHPNAVESQCSYAVHSYFKTKGQTESSCDFXXXXXXXXXXXXXXXCSYP*IAV-TSGTMSIT 495
            CG GA+CNP      C++P+ V S C+YAV+S+F+ KGQ+  SC+F               C++P  A  +SG+ ++T
Sbjct:   41 CGNGADCNPTKPKQSCFNPDNVRSHCNYAVNSFFQKKGQSPGSCNFDGTATPTNSDPSYTGCAFPTSASGSSGSTTVT 118

HSP 2 Score: 43.5134 bits (101), Expect = 2.629e-16
Identity = 18/35 (51.43%), Postives = 22/35 (62.86%), Query Frame = 3 
Query:  168 LFLGFYGHSSANWCVCKDGMGDPDIEKALDYDLWN 272
            L L   GHSSA+WCVCK G+ D  ++  LDY   N
Sbjct:    9 LLLSLAGHSSASWCVCKTGLSDTVLQATLDYACGN 43
The following BLAST results are available for this feature:
BLAST of DY305217 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 1
Match NameE-valueIdentityDescription
E13L2_ARATH2.629e-1637.18Glucan endo-1,3-beta-glucosidase-like protein 2 OS... [more]
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Properties
Property NameValue
Genbank descriptionKN0AAH2DH02RM1 PhII-III-Vesicles1 Citrus clementina cDNA 5, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>DY305217 ID=DY305217; Name=DY305217; organism=Citrus clementina; type=EST; length=1116bp
GGAACTTTTTCATCTCTCTCTCAGACCCACTCATAGGCCTCATCTTAGCT
GCTGTGTGTGTTGAGACTAACTTTTCACGGACCCAAACAACCGAGGATTT
GTTATTATTATCACATCGCTAAACTTCTTTTGCTCATTCTCTGATGGATG
TTTGGGAGCTTTTATCTCTCTTCCTTGGCTTCTATGGGCATTCAAGTGCA
AATTGGTGTGTTTGCAAAGATGGAATGGGTGACCCAGATATAGAAAAAGC
TTTGGACTATGACTTGTGGAACTGGGGCTAATTGTAACCCTATCCTTTCC
AATGGGCCTTGTTACCACCCCAACGCTGTCGAATCACAGTGCAGTTATGC
TGTCCATAGCTATTTCAAGACAAAAGGTCAAACTGAAAGCTCTTGTGATT
TTACCTGAACTGCAGCCGGTGCCACTAACAATCCCAACACTGCTGGATGT
TCTTATCCTTAAATTGCCGTCACTTCAGGCACCATGTCAATAACACTAAT
CACATGGACTCCATGCACAATCTCACCCACAACAACTCCGATCCACTACT
CACTCACAACTACTAACAGACCAAGCAACACCACACCAGGCATCACTACT
CCGGGCAGCACCACTCCATACACCAGATCACCATCTACTGAAACTGGACT
GTTGAGAGGAGTTGGTCCTGATTCATGCCATGCCAGATCTGGTATGCGCA
ACACAGACTATAATCATGGTGCGATGATACTGCAAAACTCTGCCTTGTCA
TTGATGGTCGTCCTCATGTTCGCATGCTCGATGCTCTTGAGAGGATGAAA
GAAACAATCAACATGACATCTACTAAGATGGATATGTGGTACTATAGTCA
GTGTACATGATGCTGGATCTCAATGTGCAAAGATGGACTAGGCATAGTGA
TTGTGTTGTTAATTATCAAAAGACTCCCTAAATAGCCGGCTAAAGTTTCC
TTTGTCTTATCCTCTACTACGTTGTCAAAAAGAAATGCATTAACATTTTA
ATCCCTTTCCGGCAAGGGGAAAGGACTGGTTTCTTTTCTTTTAACATTTT
TTTGATTTTTCGTTTTTAAAATTTTTTGGATAGGCAAAAACCATTTTTTT
TACTCCCTTTTGCGGG
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