DY305239

Overview
NameDY305239
Unique NameDY305239
TypeEST
OrganismCitrus clementina (Clementine)
Sequence length1251
Libraries
Library NameType
PhII-III-Vesicles1cdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of DY305239 vs. ExPASy Swiss-Prot
Match: NDUS7_BRAOL (NADH-ubiquinone oxidoreductase 20 kDa subunit, mitochondrial OS=Brassica oleracea PE=2 SV=1)

HSP 1 Score: 287.73 bits (735), Expect = 9.521e-77
Identity = 147/222 (66.22%), Postives = 165/222 (74.32%), Query Frame = 3
Query:  120 MAVLTKNTATRLPLLL-SQRAAC---LHTTVPXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXGGISKTAEFVISKLDDVVNYIRRGSIWPMSFGLACCAVEMMHTGAARYDLDRFGIIFRPSPRQSDVMVVAGTLTNKMAPALRKVYDQMPDPRWVISMGSCANXXXXXXXXXXXXXXCDRIVPVDIYVPGCPPTAEALLYGILQLQKKMNGRRDLYYWWTK 773
            MA++T+NTATRLPL+L S RAA    LHT++P                               G+SKTAEFVISK+DD++N+ RRGSIWPM+FGLACCAVEMMHTGAARYDLDRFGIIFRPSPRQSD M+VAGTLTNKMAPALRKVYDQMP+PRWVISMGSCAN              CDRIVPVDIYVPGCPPTAEALLYG+LQLQKK+N R+D  +WW K
Sbjct:    1 MAMITRNTATRLPLVLQSHRAAAVSHLHTSLPALSPATTPTSYTRPGPPSTSAPPP-------GLSKTAEFVISKVDDLMNWARRGSIWPMTFGLACCAVEMMHTGAARYDLDRFGIIFRPSPRQSDCMIVAGTLTNKMAPALRKVYDQMPEPRWVISMGSCANGGGYYHYSYSVVRGCDRIVPVDIYVPGCPPTAEALLYGLLQLQKKINRRKDFLHWWNK 215          
BLAST of DY305239 vs. ExPASy Swiss-Prot
Match: NDUS7_ARATH (NADH-ubiquinone oxidoreductase 20 kDa subunit, mitochondrial OS=Arabidopsis thaliana GN=At5g11770 PE=1 SV=1)

HSP 1 Score: 283.878 bits (725), Expect = 1.375e-75
Identity = 146/225 (64.89%), Postives = 163/225 (72.44%), Query Frame = 3
Query:  120 MAVLTKNTATRLPLLL-SQRAAC------LHTTVPXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXGGISKTAEFVISKLDDVVNYIRRGSIWPMSFGLACCAVEMMHTGAARYDLDRFGIIFRPSPRQSDVMVVAGTLTNKMAPALRKVYDQMPDPRWVISMGSCANXXXXXXXXXXXXXXCDRIVPVDIYVPGCPPTAEALLYGILQLQKKMNGRRDLYYWWTK 773
            MA++T+NTATRLPLLL SQRA        LHT++P                               G+SK AEFVISK+DD++N+ R GSIWPM+FGLACCAVEMMHTGAARYDLDRFGIIFRPSPRQSD M+VAGTLTNKMAPALRKVYDQMP+PRWVISMGSCAN              CDRIVPVDIYVPGCPPTAEALLYG+LQLQKK+N R+D  +WW K
Sbjct:    1 MAMITRNTATRLPLLLQSQRAVAAASVSHLHTSLPALSPSTSPTSYTRPGPPSTSPPPP-------GLSKAAEFVISKVDDLMNWARTGSIWPMTFGLACCAVEMMHTGAARYDLDRFGIIFRPSPRQSDCMIVAGTLTNKMAPALRKVYDQMPEPRWVISMGSCANGGGYYHYSYSVVRGCDRIVPVDIYVPGCPPTAEALLYGLLQLQKKINRRKDFLHWWNK 218          
BLAST of DY305239 vs. ExPASy Swiss-Prot
Match: NDUS7_SOLTU (NADH-ubiquinone oxidoreductase 20 kDa subunit, mitochondrial OS=Solanum tuberosum PE=2 SV=1)

HSP 1 Score: 271.552 bits (693), Expect = 7.061e-72
Identity = 135/201 (67.16%), Postives = 148/201 (73.63%), Query Frame = 3
Query:  171 QRAACLHTTVPXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXGGISKTAEFVISKLDDVVNYIRRGSIWPMSFGLACCAVEMMHTGAARYDLDRFGIIFRPSPRQSDVMVVAGTLTNKMAPALRKVYDQMPDPRWVISMGSCANXXXXXXXXXXXXXXCDRIVPVDIYVPGCPPTAEALLYGILQLQKKMNGRRDLYYWWTK 773
            QRAA +HTT+P                               GISK AE+VISK+DD++N+ RRGSIWPM+FGLACCAVEMMH GAARYD DRFGIIFRPSPRQSDVM+VAGTLTNKMAPALRKVYDQMP+PRWVISMGSCAN              CDRIVPVDIYVPGCPPTAEALLYGILQLQKK+N R+DL  WWT+
Sbjct:   19 QRAATIHTTLPSLSQQPASSPATSGGAQPPSMNTP------AGISKPAEYVISKVDDLMNWARRGSIWPMTFGLACCAVEMMHAGAARYDFDRFGIIFRPSPRQSDVMIVAGTLTNKMAPALRKVYDQMPEPRWVISMGSCANGGGYYHYSYAVVRGCDRIVPVDIYVPGCPPTAEALLYGILQLQKKINRRKDLLMWWTQ 213          
BLAST of DY305239 vs. ExPASy Swiss-Prot
Match: NDUS7_RECAM (NADH-ubiquinone oxidoreductase 20 kDa subunit OS=Reclinomonas americana GN=NAD10 PE=3 SV=1)

HSP 1 Score: 243.432 bits (620), Expect = 2.059e-63
Identity = 112/153 (73.20%), Postives = 128/153 (83.66%), Query Frame = 3
Query:  315 EFVISKLDDVVNYIRRGSIWPMSFGLACCAVEMMHTGAARYDLDRFGIIFRPSPRQSDVMVVAGTLTNKMAPALRKVYDQMPDPRWVISMGSCANXXXXXXXXXXXXXXCDRIVPVDIYVPGCPPTAEALLYGILQLQKKMNGRRDLYYWWTK 773
            EF++SK+D++VN+ R+GS+WPM+FGLACCAVEMMH+ A+RYDLDRFGIIFRPSPRQSDVM+VAGTLTNKMAPALRKVYDQM +PRWV+SMGSCAN              CDRIVPVDIYVPGCPPTAEALLYG+LQLQKK+   R   YW  K
Sbjct:   30 EFIVSKMDELVNWARKGSLWPMTFGLACCAVEMMHSAASRYDLDRFGIIFRPSPRQSDVMIVAGTLTNKMAPALRKVYDQMSEPRWVVSMGSCANGGGYYHYSYSVVRGCDRIVPVDIYVPGCPPTAEALLYGLLQLQKKIKRSRKTLYWLQK 182          
BLAST of DY305239 vs. ExPASy Swiss-Prot
Match: NDUS7_PONPY (NADH dehydrogenase [ubiquinone] iron-sulfur protein 7, mitochondrial OS=Pongo pygmaeus GN=NDUFS7 PE=2 SV=1)

HSP 1 Score: 235.728 bits (600), Expect = 4.294e-61
Identity = 108/157 (68.79%), Postives = 127/157 (80.89%), Query Frame = 3
Query:  303 SKTAEFVISKLDDVVNYIRRGSIWPMSFGLACCAVEMMHTGAARYDLDRFGIIFRPSPRQSDVMVVAGTLTNKMAPALRKVYDQMPDPRWVISMGSCANXXXXXXXXXXXXXXCDRIVPVDIYVPGCPPTAEALLYGILQLQKKMNGRRDLYYWWTK 773
            S   E+V++KLDD+VN+ RR S+WPM+FGLACCAVEMMH  A RYD+DRFG++FR SPRQSDVM+VAGTLTNKMAPALRKVYDQMP+PR+V+SMGSCAN              CDRIVPVDIY+PGCPPTAEALLYGILQLQ+K+   R L  W+ +
Sbjct:   57 SSRGEYVVAKLDDLVNWARRSSLWPMTFGLACCAVEMMHMAAPRYDMDRFGVVFRASPRQSDVMIVAGTLTNKMAPALRKVYDQMPEPRYVVSMGSCANGGGYYHYSYSVVRGCDRIVPVDIYIPGCPPTAEALLYGILQLQRKIKRERRLQIWYRR 213          
BLAST of DY305239 vs. ExPASy Swiss-Prot
Match: NDUS7_PANTR (NADH dehydrogenase [ubiquinone] iron-sulfur protein 7, mitochondrial OS=Pan troglodytes GN=NDUFS7 PE=2 SV=1)

HSP 1 Score: 235.728 bits (600), Expect = 4.294e-61
Identity = 108/157 (68.79%), Postives = 127/157 (80.89%), Query Frame = 3
Query:  303 SKTAEFVISKLDDVVNYIRRGSIWPMSFGLACCAVEMMHTGAARYDLDRFGIIFRPSPRQSDVMVVAGTLTNKMAPALRKVYDQMPDPRWVISMGSCANXXXXXXXXXXXXXXCDRIVPVDIYVPGCPPTAEALLYGILQLQKKMNGRRDLYYWWTK 773
            S   E+V++KLDD+VN+ RR S+WPM+FGLACCAVEMMH  A RYD+DRFG++FR SPRQSDVM+VAGTLTNKMAPALRKVYDQMP+PR+V+SMGSCAN              CDRIVPVDIY+PGCPPTAEALLYGILQLQ+K+   R L  W+ +
Sbjct:   57 SSRGEYVVAKLDDLVNWARRSSLWPMTFGLACCAVEMMHMAAPRYDMDRFGVVFRASPRQSDVMIVAGTLTNKMAPALRKVYDQMPEPRYVVSMGSCANGGGYYHYSYSVVRGCDRIVPVDIYIPGCPPTAEALLYGILQLQRKIKRERRLQIWYRR 213          
BLAST of DY305239 vs. ExPASy Swiss-Prot
Match: NDUS7_HUMAN (NADH dehydrogenase [ubiquinone] iron-sulfur protein 7, mitochondrial OS=Homo sapiens GN=NDUFS7 PE=1 SV=3)

HSP 1 Score: 235.728 bits (600), Expect = 4.294e-61
Identity = 108/157 (68.79%), Postives = 127/157 (80.89%), Query Frame = 3
Query:  303 SKTAEFVISKLDDVVNYIRRGSIWPMSFGLACCAVEMMHTGAARYDLDRFGIIFRPSPRQSDVMVVAGTLTNKMAPALRKVYDQMPDPRWVISMGSCANXXXXXXXXXXXXXXCDRIVPVDIYVPGCPPTAEALLYGILQLQKKMNGRRDLYYWWTK 773
            S   E+V++KLDD+VN+ RR S+WPM+FGLACCAVEMMH  A RYD+DRFG++FR SPRQSDVM+VAGTLTNKMAPALRKVYDQMP+PR+V+SMGSCAN              CDRIVPVDIY+PGCPPTAEALLYGILQLQ+K+   R L  W+ +
Sbjct:   57 SSRGEYVVAKLDDLVNWARRSSLWPMTFGLACCAVEMMHMAAPRYDMDRFGVVFRASPRQSDVMIVAGTLTNKMAPALRKVYDQMPEPRYVVSMGSCANGGGYYHYSYSVVRGCDRIVPVDIYIPGCPPTAEALLYGILQLQRKIKRERRLQIWYRR 213          
BLAST of DY305239 vs. ExPASy Swiss-Prot
Match: NDUS7_GORGO (NADH dehydrogenase [ubiquinone] iron-sulfur protein 7, mitochondrial OS=Gorilla gorilla gorilla GN=NDUFS7 PE=2 SV=1)

HSP 1 Score: 235.728 bits (600), Expect = 4.294e-61
Identity = 108/157 (68.79%), Postives = 127/157 (80.89%), Query Frame = 3
Query:  303 SKTAEFVISKLDDVVNYIRRGSIWPMSFGLACCAVEMMHTGAARYDLDRFGIIFRPSPRQSDVMVVAGTLTNKMAPALRKVYDQMPDPRWVISMGSCANXXXXXXXXXXXXXXCDRIVPVDIYVPGCPPTAEALLYGILQLQKKMNGRRDLYYWWTK 773
            S   E+V++KLDD+VN+ RR S+WPM+FGLACCAVEMMH  A RYD+DRFG++FR SPRQSDVM+VAGTLTNKMAPALRKVYDQMP+PR+V+SMGSCAN              CDRIVPVDIY+PGCPPTAEALLYGILQLQ+K+   R L  W+ +
Sbjct:   57 SSRGEYVVAKLDDLVNWARRSSLWPMTFGLACCAVEMMHMAAPRYDMDRFGVVFRASPRQSDVMIVAGTLTNKMAPALRKVYDQMPEPRYVVSMGSCANGGGYYHYSYSVVRGCDRIVPVDIYIPGCPPTAEALLYGILQLQRKIKRERRLQIWYRR 213          
BLAST of DY305239 vs. ExPASy Swiss-Prot
Match: NDUS7_PONAB (NADH dehydrogenase [ubiquinone] iron-sulfur protein 7, mitochondrial OS=Pongo abelii GN=NDUFS7 PE=2 SV=1)

HSP 1 Score: 235.343 bits (599), Expect = 5.608e-61
Identity = 107/157 (68.15%), Postives = 127/157 (80.89%), Query Frame = 3
Query:  303 SKTAEFVISKLDDVVNYIRRGSIWPMSFGLACCAVEMMHTGAARYDLDRFGIIFRPSPRQSDVMVVAGTLTNKMAPALRKVYDQMPDPRWVISMGSCANXXXXXXXXXXXXXXCDRIVPVDIYVPGCPPTAEALLYGILQLQKKMNGRRDLYYWWTK 773
            S   E+V++KLDD++N+ RR S+WPM+FGLACCAVEMMH  A RYD+DRFG++FR SPRQSDVM+VAGTLTNKMAPALRKVYDQMP+PR+V+SMGSCAN              CDRIVPVDIY+PGCPPTAEALLYGILQLQ+K+   R L  W+ +
Sbjct:   57 SSRGEYVVAKLDDLINWARRSSLWPMTFGLACCAVEMMHMAAPRYDMDRFGVVFRASPRQSDVMIVAGTLTNKMAPALRKVYDQMPEPRYVVSMGSCANGGGYYHYSYSVVRGCDRIVPVDIYIPGCPPTAEALLYGILQLQRKIKRERRLQIWYRR 213          
BLAST of DY305239 vs. ExPASy Swiss-Prot
Match: NDUS7_BOVIN (NADH dehydrogenase [ubiquinone] iron-sulfur protein 7, mitochondrial OS=Bos taurus GN=NDUFS7 PE=1 SV=1)

HSP 1 Score: 235.343 bits (599), Expect = 5.608e-61
Identity = 108/157 (68.79%), Postives = 127/157 (80.89%), Query Frame = 3
Query:  303 SKTAEFVISKLDDVVNYIRRGSIWPMSFGLACCAVEMMHTGAARYDLDRFGIIFRPSPRQSDVMVVAGTLTNKMAPALRKVYDQMPDPRWVISMGSCANXXXXXXXXXXXXXXCDRIVPVDIYVPGCPPTAEALLYGILQLQKKMNGRRDLYYWWTK 773
            S   E+V++KLDD++N+ RR S+WPM+FGLACCAVEMMH  A RYD+DRFG++FR SPRQSDVM+VAGTLTNKMAPALRKVYDQMP+PR+V+SMGSCAN              CDRIVPVDIYVPGCPPTAEALLYGILQLQKK+   + L  W+ +
Sbjct:   60 SSRGEYVVAKLDDLINWARRSSLWPMTFGLACCAVEMMHMAAPRYDMDRFGVVFRASPRQSDVMIVAGTLTNKMAPALRKVYDQMPEPRYVVSMGSCANGGGYYHYSYSVVRGCDRIVPVDIYVPGCPPTAEALLYGILQLQKKIKREKRLRIWYRR 216          
The following BLAST results are available for this feature:
BLAST of DY305239 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 500
Match NameE-valueIdentityDescription
NDUS7_BRAOL9.521e-7766.22NADH-ubiquinone oxidoreductase 20 kDa subunit, mit... [more]
NDUS7_ARATH1.375e-7564.89NADH-ubiquinone oxidoreductase 20 kDa subunit, mit... [more]
NDUS7_SOLTU7.061e-7267.16NADH-ubiquinone oxidoreductase 20 kDa subunit, mit... [more]
NDUS7_RECAM2.059e-6373.20NADH-ubiquinone oxidoreductase 20 kDa subunit OS=R... [more]
NDUS7_PONPY4.294e-6168.79NADH dehydrogenase [ubiquinone] iron-sulfur protei... [more]
NDUS7_PANTR4.294e-6168.79NADH dehydrogenase [ubiquinone] iron-sulfur protei... [more]
NDUS7_HUMAN4.294e-6168.79NADH dehydrogenase [ubiquinone] iron-sulfur protei... [more]
NDUS7_GORGO4.294e-6168.79NADH dehydrogenase [ubiquinone] iron-sulfur protei... [more]
NDUS7_PONAB5.608e-6168.15NADH dehydrogenase [ubiquinone] iron-sulfur protei... [more]
NDUS7_BOVIN5.608e-6168.79NADH dehydrogenase [ubiquinone] iron-sulfur protei... [more]

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Properties
Property NameValue
Genbank descriptionKN0AAH3AC04RM1 PhII-III-Vesicles1 Citrus clementina cDNA 5, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>DY305239 ID=DY305239; Name=DY305239; organism=Citrus clementina; type=EST; length=1251bp
GCAACAACAATCAATTTCTCTCTCGCTTTGCCCCCGTGTGAGAAAACTAA
ACCAAACCAAACCAAACCCCACCCCACAACCCCCAAAACACAAGCCCAAA
AAAAAAAAAAAAAAAAACTATGGCGGTACTCACCAAAAACACTGCCACGC
GCCTCCCTCTCCTCCTCTCGCAACGCGCCGCCTGTCTCCACACGACCGTC
CCCTCTCTCTCCTCGGCCTCCGGCTCCTCCTCCTCCTTCTCCTCGCAGCC
CACCTCCTACGCTCGCCCTCCACCGCCCTCGACCACAAGTCCAGGCGGTA
TCTCAAAGACGGCGGAATTCGTGATCTCTAAATTGGATGATGTCGTCAAC
TATATTCGTCGCGGCTCCATCTGGCCCATGTCCTTCGGGCTGGCCTGCTG
CGCCGTCGAGATGATGCACACCGGTGCTGCTCGTTACGATTTAGATCGAT
TCGGTATCATTTTCAGGCCCAGCCCTCGCCAATCCGATGTCATGGTCGTA
GCTGGCACACTCACAAACAAGATGGCCCCTGCCCTTCGCAAGGTTTATGA
TCAAATGCCAGATCCTAGGTGGGTCATTTCTATGGGAAGCTGTGCAAATG
GTGGTGGATATTATCATTACTCTTACTCTGTTGTTCGGGGTTGCGATAGG
ATTGTCCCCGTGGACATCTATGTTCCGGGCTGCCCTCCTACTGCTGAGGC
CCTACTCTATGGAATTCTCCAACTGCAGAAAAAGATGAACGGGCGCAGAG
ATTTGTATTATTGGTGGACAAAGTGAGAAAAGCTCAGGTGGCTCCTTGGC
AGTTACACTCGACTATTATGTACTAATAAAATCCCACTATTTATCTGTTG
TCTGATAAATGTCCATGTAAAGGGAGAAATAATTTTCACCTGTTTTAAAA
CATACTCCCGGAAAAGGGCTAATGTGGTGCTAAAACCAAAATTTTCAGAT
TTGGATTTTTTGGTTCTCTGGGCCTTGCCAAACGGAATCATTGTCCTGTA
AAAAATTATTTTAAAAAGGCCTCAAAAAAAAAAAAAAAAAAACCCCTAGG
GGGGGGGGCCCGGTAAACCCCATTTCCCCCATAAGGGGAATCCATAAATT
ACAATTTTCCTTGGGCCCCCTGTTTTTTTACACCCCCCCGGGAAATGGGA
AAAAAACCCCTTGGGGCTTTTTCCCCCACATTTTTTACCCCCCCTCTTCT
CACAACCAACTATCTCCCCCTCTTTTTTTCCCCCCGGTGGGGTGCGGGCG
G
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