DY305289

Overview
NameDY305289
Unique NameDY305289
TypeEST
OrganismCitrus clementina (Clementine)
Sequence length1245
Libraries
Library NameType
PhII-III-Vesicles1cdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of DY305289 vs. ExPASy Swiss-Prot
Match: MYG1_HUMAN (UPF0160 protein MYG1, mitochondrial OS=Homo sapiens GN=C12orf10 PE=1 SV=1)

HSP 1 Score: 221.476 bits (563), Expect = 8.351e-57
Identity = 124/303 (40.92%), Postives = 168/303 (55.45%), Query Frame = 1
Query:  148 RVGTHNGSFHCDEALGCFMIRLTDKFFNAQIVRSR------------------DPK------------------------------------HFGKELIAKELNVDEGHPDVHRLFLAVYKNFMEAIDAIDNGINQYDTDKPPRYVNNTNLSSRVGKLNLDWTEPDQSAERENEAFQQGMDLAGKEFLDTVRFYVRSWLPARSIVVECIAERYDYDPSGEIMVL-KRFCPWKLHLFELEEEMKIEPLIKYVLYEDDRGKQWRVQAVAVSPDRFESRKPLPAQWRGLRDDELFKEAGIPGCVFV 891
            R+GTHNG+FHCDEAL C ++RL  ++ +A+IVR+R                  DP+                                    HFG +L+A+ L   E    V  L+  +Y+NF+E +DA+DNGI+Q+  +  PRY   T LS+RV +LN  W  PDQ  E     F++ MDL  +EFL  + FY  SWLPAR++V E +A+R+  DPSGEI+ L K  CPWK HL+ LE  +     I +V+Y D  G QWR+Q V   P  F+SR PLP  WRGLRD+ L + +GIPGC+FV
Sbjct:   46 RIGTHNGTFHCDEALACALLRLLPEYRDAEIVRTRDPEKLASCDIVVDVGGEYDPRRHRYDHHQRSFTETMSSLSPGKPWQTKLSSAGLIYLHFGHKLLAQLLGPSEEDSMVGTLYDKMYENFVEEVDAVDNGISQW-AEGEPRYALTTTLSARVARLNPTWNHPDQDTEA---GFKRAMDLVQEEFLQRLDFYQHSWLPARALVEEALAQRFQVDPSGEIVELAKGACPWKEHLYHLESGLSPPVAIFFVIYTDQAG-QWRIQCVPKEPHSFQSRLPLPEPWRGLRDEALDQVSGIPGCIFV 343          
BLAST of DY305289 vs. ExPASy Swiss-Prot
Match: MYG1_BOVIN (UPF0160 protein MYG1, mitochondrial OS=Bos taurus PE=2 SV=1)

HSP 1 Score: 216.853 bits (551), Expect = 2.057e-55
Identity = 122/303 (40.26%), Postives = 171/303 (56.44%), Query Frame = 1
Query:  148 RVGTHNGSFHCDEALGCFMIRLTDKFFNAQIVRSR------------------DPK------------------------------------HFGKELIAKELNVDEGHPDVHRLFLAVYKNFMEAIDAIDNGINQYDTDKPPRYVNNTNLSSRVGKLNLDWTEPDQSAERENEAFQQGMDLAGKEFLDTVRFYVRSWLPARSIVVECIAERYDYDPSGEIMVLKRF-CPWKLHLFELEEEMKIEPLIKYVLYEDDRGKQWRVQAVAVSPDRFESRKPLPAQWRGLRDDELFKEAGIPGCVFV 891
            R+GTHNG+FHCDEAL C ++RL  ++  A+IVR+R                  DP+                                    HFG +L+A+ L   E    V  L+  +Y+NF+E +DA+DNGI+Q++  +P RY+  T LS+RV +LN  W +P+Q  E     F++ MDL  +EFL  + FY  SWLPAR++V E +A+R+  DPSGEI+ L++  CPWK HL++LE  +     I +V+Y D  G QWRVQ V   P  F+SR PL   WRGLRD+ L + +GIPGC+FV
Sbjct:   46 RIGTHNGTFHCDEALACALLRLLPEYREAEIVRTRDPEKLAACDIVVDVGGEYDPQRHRYDHHQRSFTETMSSLSPGKPWQTKLSSAGLIYLHFGHKLLAQLLGTSEEDGMVGTLYDKMYENFVEEVDAVDNGISQWEEGEP-RYLLTTTLSARVARLNPTWNQPNQDTEA---GFKRAMDLVREEFLQRLDFYQNSWLPARTLVEEALAKRFQVDPSGEIIELEKGGCPWKEHLYQLELGLSPAGTIAFVIYTDQAG-QWRVQCVPKEPHSFQSRLPLLEPWRGLRDEALDQISGIPGCIFV 343          
BLAST of DY305289 vs. ExPASy Swiss-Prot
Match: U160_DICDI (UPF0160 protein OS=Dictyostelium discoideum GN=DDB_G0267768 PE=3 SV=1)

HSP 1 Score: 211.46 bits (537), Expect = 8.642e-54
Identity = 115/308 (37.34%), Postives = 171/308 (55.52%), Query Frame = 1
Query:  157 THNGSFHCDEALGCFMIRLTDKFFNAQIVRSRDP-------------------------------------------------KHFGKELIAKELNVDEGHPDVHRLFLAVYKNFMEAIDAIDNGINQYDTDKPPRYVNNTNLSSRVGKLNLDWTEPDQSAERENEAFQQGMDLAGKEFLDTVRFYVRSWLPARSIVVECIAERYDYDPSGEIMVLKRFCPWKLHLFELEEEMKIEPLIKYVLYEDDRGKQWRVQAVAVSPDRFESRKPLPAQWRGLRDDELFKEAGIPGCVFVI*LVSLGEIKLMEG 933
            TH+GSFH DEAL C++++L   + +++I+RSRD                                                  KH+GK++I + L+ ++   ++  L+  +Y + ++ +D +DNG+ +Y +D  PRY + +++S+RVG LN  W EP Q  E  N+ F++ M+L G+ FLD + +Y +SWLP RSIV   +  R     SGEI++L  FCPWK HLF LE+E  I+  IK+VL+ED  G QWRV AV ++   F  R PLP +WRG RD+EL + +GI GCVF      +G  K  EG
Sbjct:    8 THSGSFHADEALACYLLKLLPTYKDSKIIRSRDKSVIEKSTVAVDVGAVYNFEKLRFDHHQSGFTETFDDKHDIKLSSAGLIYKHYGKDIIKQRLDTNDSITEL--LYQKLYDSMIQELDGVDNGVERYPSDIKPRYQSGSSISARVGHLNQGWNEP-QDDEIVNKQFEKAMELMGQYFLDRLDYYGKSWLPCRSIVENALENRKQTHSSGEILILDMFCPWKDHLFSLEQEKDIKTPIKFVLFEDTSG-QWRVSAVGINLHSFTLRLPLPEEWRGKRDEELSQISGIEGCVFAHANGFIGGNKTREG 311          
BLAST of DY305289 vs. ExPASy Swiss-Prot
Match: MYG1_RAT (UPF0160 protein MYG1, mitochondrial OS=Rattus norvegicus GN=Myg1 PE=1 SV=1)

HSP 1 Score: 197.978 bits (502), Expect = 9.888e-50
Identity = 101/211 (47.87%), Postives = 136/211 (64.45%), Query Frame = 1
Query:  262 HFGKELIAKELNVDEGHPDVHRLFLAVYKNFMEAIDAIDNGINQYDTDKPPRYVNNTNLSSRVGKLNLDWTEPDQSAERENEAFQQGMDLAGKEFLDTVRFYVRSWLPARSIVVECIAERYDYDPSGEIMVL-KRFCPWKLHLFELEEEMKIEPLIKYVLYEDDRGKQWRVQAVAVSPDRFESRKPLPAQWRGLRDDELFKEAGIPGCVFV 891
            HFG +L+A+ L   E    V  ++  +Y+NF+E +DA+DNGI+Q+  +  PRY   T LS+RV +LN  W +PDQ  E     F++ MDL  +EFL  + FY  SWLPAR++V E +A+R+  D SGEI+ L K  CPWK HL+ LE E+     I +V+Y D  G QWRVQ V   P  F+SR PLP  WRGLRD+ L + +GIPGC+FV
Sbjct:  138 HFGHKLLAQLLGTSEEDSVVDTIYDKMYENFVEEVDAVDNGISQW-AEGEPRYALTTTLSARVSRLNPTWNQPDQDTEA---GFRRAMDLVQEEFLQRLNFYQHSWLPARALVEEALAQRFKVDSSGEIVELAKGGCPWKEHLYHLESELSPTVAITFVIYTDQAG-QWRVQCVPKEPHSFQSRLPLPEPWRGLRDEALDQVSGIPGCIFV 343          
BLAST of DY305289 vs. ExPASy Swiss-Prot
Match: MYG1_MOUSE (UPF0160 protein MYG1, mitochondrial OS=Mus musculus GN=Myg1 PE=2 SV=1)

HSP 1 Score: 197.208 bits (500), Expect = 1.687e-49
Identity = 100/211 (47.39%), Postives = 137/211 (64.93%), Query Frame = 1
Query:  262 HFGKELIAKELNVDEGHPDVHRLFLAVYKNFMEAIDAIDNGINQYDTDKPPRYVNNTNLSSRVGKLNLDWTEPDQSAERENEAFQQGMDLAGKEFLDTVRFYVRSWLPARSIVVECIAERYDYDPSGEIMVL-KRFCPWKLHLFELEEEMKIEPLIKYVLYEDDRGKQWRVQAVAVSPDRFESRKPLPAQWRGLRDDELFKEAGIPGCVFV 891
            HFG++L+A+ L   E    V  ++  +Y+NF+E +DA+DNGI+Q+  +  PRY   T LS+RV +LN  W +P+Q  E     F++ MDL  +EFL  + FY  SWLPAR++V E +A+R+  D SGEI+ L K  CPWK HL+ LE E+  +  I +V+Y D  G QWRVQ V   P  F+SR PLP  WRGLRD  L + +GIPGC+FV
Sbjct:  137 HFGRKLLAQLLGTSEEDSVVDTIYDKMYENFVEEVDAVDNGISQW-AEGEPRYAMTTTLSARVARLNPTWNQPNQDTEA---GFRRAMDLVQEEFLQRLNFYQHSWLPARALVEEALAQRFKVDSSGEIVELAKGGCPWKEHLYHLESELSPKVAITFVIYTDQAG-QWRVQCVPKEPHSFQSRLPLPEPWRGLRDKALDQVSGIPGCIFV 342          
BLAST of DY305289 vs. ExPASy Swiss-Prot
Match: YEY6_YEAST (UPF0160 protein YER156C OS=Saccharomyces cerevisiae GN=YER156C PE=1 SV=1)

HSP 1 Score: 194.897 bits (494), Expect = 8.371e-49
Identity = 110/302 (36.42%), Postives = 166/302 (54.97%), Query Frame = 1
Query:  145 KRVGTHNGSFHCDEALGCFMIRLTDKFFNAQIVRSRDPK------------------------------------------------HFGKELIAKELNVDEGHPDVHRLFLAVYKNFMEAIDAIDNGINQY----DTDKPPRYVNNT-NLSSRVGKLNLDWTEPDQSAERENEAFQQGMDLAGKEFLDTVRFYVRSWLPARSIVVECIAERYDYDPSGEIMVLKRFCPWKLHLFELEEEMKIEPLIKYVLYEDDRGKQWRVQAVAVSPDRFESRKPLPAQWRGLRDDELFKEAGIPGCVFV 891
            K++ TH+GSFH DE+L  +M+RL  +F +A++VRSR+PK                                                H+G+++I   LN      D+  L+  VYK F+EA+DA DNGI++Y    D++  P + +N  ++   +  +N +W E D S E  +  F +  +  G  F+  VR Y +SWLPA+++V + I ER D D SG+I+VL +FCPWK HL+ELE E  IE  I++VL+ D  G  WRV  V ++   F+ R+ LP   RGLRD+EL  ++G+PGC+F+
Sbjct:   15 KQICTHSGSFHADESLAVYMLRLLPEFKDAKLVRSRNPKDWEASDILVDVGAQYDGVKFFDHHQRGFFETFNEKYKTKLSSAGLIFKHYGRDIIKTILNNKVSSSDLDLLYDKVYKQFVEALDANDNGISKYTIPKDSNLEPNFRDNAISIPGIISGMNPNWNE-DTSDESFDRCFARASEFIGGVFVTLVRGYGQSWLPAKALVAQAIDERMDVDKSGKIIVLPQFCPWKEHLYELEREKNIEKQIEFVLFTDSSG-AWRVSTVPINSTSFQFRRGLPEPLRGLRDEELSTKSGVPGCIFI 314          
BLAST of DY305289 vs. ExPASy Swiss-Prot
Match: YIW4_SCHPO (UPF0160 protein C694.04c OS=Schizosaccharomyces pombe GN=SPAC694.04c PE=2 SV=1)

HSP 1 Score: 189.119 bits (479), Expect = 4.593e-47
Identity = 109/301 (36.21%), Postives = 154/301 (51.16%), Query Frame = 1
Query:  142 LKRVGTHNGSFHCDEALGCFMIRLTDKFFNAQIVRSRDP------------------------------------------------KHFGKELI---AKELNVDEGHPDVHRLFLAVYKNFMEAIDAIDNGINQYDTDKPPRYVNNTNLSSRVGKLNLDWTEPDQSAERENEAFQQGMDLAGKEFLDTVRFYVRSWLPARSIVVECIAERYDYDPSGEIMVLKRFCPWKLHLFELEEEMKIEPLIKYVLYEDDRGKQWRVQAVAVSPDRFESRKPLPAQWRGLRDDELFKEAGIPGCVFV 891
            L ++ TH+G+FH DEAL  +M+R  D+F  AQIVRSRDP                                                KHFG+E+I     +L ++E   D+  L+  VY++F+E +DA DNGI+ Y     P +    +L   V      W    Q  +   E FQ+  DL G  F+ +V  Y  SWLPA+++  E I +  D      I+++ +F PWK HLF++E+E+ IE   KY +Y D  GK WRVQAV++ P  F  R PLP  WRG+RD++L +  GIPGC+FV
Sbjct:    4 LVKIATHSGTFHADEALAVYMLRRLDRFSGAQIVRSRDPQVLDSCDIIVDVGGKYDGIKYFDHHQREFNDTFSPKYSTRLSSAGLIYKHFGREVIHAVLPQLKINE--QDLETLYEKVYQSFVEGLDANDNGISAYPAGLKPSFKAAMSLPEMVSSFLPAWNSEKQDDQTYLECFQKASDLMGTWFVRSVEHYALSWLPAKTLAREAILKAKD----SPILIVDQFFPWKGHLFDIEKELGIENQFKYAIYSD--GKAWRVQAVSIDPTSFTCRLPLPEPWRGIRDEKLSELTGIPGCIFV 296          
BLAST of DY305289 vs. ExPASy Swiss-Prot
Match: YK4P_CAEEL (UPF0160 protein C27H6.8 OS=Caenorhabditis elegans GN=C27H6.8 PE=2 SV=2)

HSP 1 Score: 182.185 bits (461), Expect = 5.615e-45
Identity = 95/213 (44.60%), Postives = 134/213 (62.91%), Query Frame = 1
Query:  262 HFGKELIAKELNVDEGHPDVHRLFLAVYKNFMEAIDAIDNGINQYDTDKPPRYVNNTNLSSRVGKLNLDWTEPDQSAERENEAFQQGMDLAGKEFLDTVRFYVRSWLPARSIVVECIAERYDYDPSGEIMVLKRF-CPWKLHLFELEEEMKI-EPLIKYVLYEDDRGKQWRVQAVAVSP-DRFESRKPLPAQWRGLRDDELFKEAGIPGCVFV 891
            H+G+E+I + L  +     +   +  +Y+ F+E+IDAIDNGI+QYD    PRY ++ NLSSR G+ N  W EP+  A+   E FQQ M   G+EF  +V++    W PAR I+   + +R++ D SG I++++   CPWK H F++E E  I +  I Y+L+ D     WRVQA+ V     FE+R PLPA WRGLRDD+L KE+GIPG VFV
Sbjct:   95 HYGREVINQILGGNVSSSMIDLFYHRLYEQFVESIDAIDNGISQYDG--VPRYHSSGNLSSRTGQFNSHWNEPENDAD---ERFQQAMQFIGEEFSRSVKYLANVWWPAREIIEAAVDKRFEIDASGRIILIENGGCPWKEHFFDIEVEKNIADDNITYILFSDSTNASWRVQAIPVDKMSSFENRMPLPAAWRGLRDDDLSKESGIPGGVFV 302          
The following BLAST results are available for this feature:
BLAST of DY305289 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 8
Match NameE-valueIdentityDescription
MYG1_HUMAN8.351e-5740.92UPF0160 protein MYG1, mitochondrial OS=Homo sapien... [more]
MYG1_BOVIN2.057e-5540.26UPF0160 protein MYG1, mitochondrial OS=Bos taurus ... [more]
U160_DICDI8.642e-5437.34UPF0160 protein OS=Dictyostelium discoideum GN=DDB... [more]
MYG1_RAT9.888e-5047.87UPF0160 protein MYG1, mitochondrial OS=Rattus norv... [more]
MYG1_MOUSE1.687e-4947.39UPF0160 protein MYG1, mitochondrial OS=Mus musculu... [more]
YEY6_YEAST8.371e-4936.42UPF0160 protein YER156C OS=Saccharomyces cerevisia... [more]
YIW4_SCHPO4.593e-4736.21UPF0160 protein C694.04c OS=Schizosaccharomyces po... [more]
YK4P_CAEEL5.615e-4544.60UPF0160 protein C27H6.8 OS=Caenorhabditis elegans ... [more]
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Properties
Property NameValue
Genbank descriptionKN0AAH3BA09RM1 PhII-III-Vesicles1 Citrus clementina cDNA 5, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>DY305289 ID=DY305289; Name=DY305289; organism=Citrus clementina; type=EST; length=1245bp
GGCGCAACCAAAGGGTTTAACCAGAAACTCTTCTTCTTCAGCGTGCACAA
AAACCTCTTCACTCGCCCTATCATAGCCATGGCAGGCACCGGTGTTTCTT
CTTCTCCTGCTTACTCCACTTCATCCCCCAGCCAAGCCCCTCTCAAGCGC
GTGGGCACCCACAACGGCAGCTTCCACTGCGACGAGGCCCTTGGTTGCTT
CATGATTCGCCTCACTGACAAGTTCTTCAACGCCCAGATAGTCCGCTCCC
GCGACCCCAAGCATTTTGGAAAGGAGTTAATAGCTAAGGAACTTAATGTT
GATGAAGGGCATCCAGACGTGCATCGACTATTTTTGGCTGTTTATAAGAA
CTTCATGGAGGCAATCGATGCTATTGATAACGGAATCAATCAGTATGACA
CAGACAAACCTCCAAGATATGTGAATAATACAAATTTGTCTTCTAGGGTG
GGGAAACTAAATTTGGATTGGACGGAACCTGATCAGTCAGCGGAGAGGGA
GAATGAAGCCTTCCAACAAGGAATGGATCTGGCTGGCAAAGAGTTTCTGG
ACACTGTTCGATTTTATGTGAGATCATGGTTACCAGCACGATCAATTGTA
GTGGAATGTATTGCAGAAAGATATGATTATGATCCAAGTGGTGAAATTAT
GGTTTTGAAAAGATTTTGTCCTTGGAAGCTTCACTTGTTTGAGCTTGAGG
AGGAGATGAAGATTGAGCCTCTTATTAAATATGTTCTTTACGAGGACGAC
AGGGGCAAACAATGGCGGGTGCAGGCTGTGGCAGTGTCCCCCGATAGATT
CGAGAGCCGGAAGCCTCTTCCAGCTCAGTGGCGAGGTCTGAGAGATGATG
AACTCTTCAAGGAAGCGGGGATACCAGGTTGTGTCTTTGTCATATGATTG
GTTTCTTTGGGGGAAATCAAATTAATGGAGGGGCAATGGCCCTGGGCTCC
GCCTGCTTTTAAACCCCTAAACAGCAAAAAAAAGGAAAAAAAATCCCTTT
ACCGGATTTTTTTAACTATTTCCCAGTTTTCATTTCCAAAAATTTTTTCC
AAGTTGTTGGCCGGAAATTTTGGGGGTTTTTTTCCCAAAAAAAACTAAAT
TCCCTAAAAAAGTTTTTTCCCTTTCTTTTCCCCCTTAAAAATTTTTATTG
TTCCAAAAAAAACCCCCCCTCTTCTAAATGGGTGATAAAATTTTTTTTTT
GTTTGGTGGGAGAAAACCAAAATACTTTTATAAAACTTTATTTTA
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