DY305300

Overview
NameDY305300
Unique NameDY305300
TypeEST
OrganismCitrus clementina (Clementine)
Sequence length793
Libraries
Library NameType
PhII-III-Vesicles1cdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Alignments
Feature NameTypeLocationAnalysis
Ccv1_Contig14291 contig Ccv1_Contig14291:278..1070. BLAST: Citrus Unigene V1 Contigs to Prunus persica proteins V1
Homology
BLAST of DY305300 vs. ExPASy Swiss-Prot
Match: DAG_ANTMA (DAG protein, chloroplastic OS=Antirrhinum majus GN=DAG PE=2 SV=1)

HSP 1 Score: 283.878 bits (725), Expect = 7.070e-76
Identity = 132/149 (88.59%), Postives = 140/149 (93.96%), Query Frame = 1
Query:    4 SSSNEPRETIMLPGCDYNHWLIVMEFPKDPAPTREQMIETYLNTLATVLGSMEEAKKNMYAFSTTTYTGFQCTVSEETSEKFKGLPGVLWVLPDSYIDVKNKDYGGDKYVNGEIIPCTYPTYQPNKRKESKYVSKRYERRRDGPPAERR 450
            ++S E RETIMLPGCDYNHWLIVMEFPKDPAPTREQMI+TYLNTLATVLGSMEEAKKNMYAFSTTTYTGFQCTV+EETSEKFKGLPGVLWVLPDSYIDVKNKDYGGDKYVNGEIIPC YPTYQP + + SKY SK Y R+RDGPPAE+R
Sbjct:   70 NNSGEERETIMLPGCDYNHWLIVMEFPKDPAPTREQMIDTYLNTLATVLGSMEEAKKNMYAFSTTTYTGFQCTVTEETSEKFKGLPGVLWVLPDSYIDVKNKDYGGDKYVNGEIIPCQYPTYQPKQSRSSKYKSKAYVRQRDGPPAEQR 218          
BLAST of DY305300 vs. ExPASy Swiss-Prot
Match: UMP1_ARATH (Uncharacterized protein At3g15000, mitochondrial OS=Arabidopsis thaliana GN=At3g15000 PE=1 SV=1)

HSP 1 Score: 137.502 bits (345), Expect = 8.183e-32
Identity = 70/166 (42.17%), Postives = 103/166 (62.05%), Query Frame = 1
Query:    7 SSNEPRETIMLPGCDYNHWLIVMEFPKDPAPTREQMIETYLNTLATVLGSMEEAKKNMYAFSTTTYTGFQCTVSEETSEKFKGLPGVLWVLPDSYIDVKNKDYGGDKYVNGEIIPCTYPTY---------------QPNKRKESKYVSKRYERRRD----GPPAER 447
            S+  P+ETI+L GCD+ HWL+V+E P    PTR+++I++Y+ TLA ++GS +EA+  +Y+ ST  Y  F   VSE+ S K K L  V WVLPDSY+DV+NKDYGG+ +++G+ +P   P Y               + N R  +   S+ +ERRR+    GPP +R
Sbjct:   82 SNRPPKETILLDGCDFEHWLVVVE-PPQGEPTRDEIIDSYIKTLAQIVGSEDEARMKIYSVSTRCYYAFGALVSEDLSHKLKELSNVRWVLPDSYLDVRNKDYGGEPFIDGKAVPYD-PKYHEEWIRNNARANERNRRNDRPRNNDRSRNFERRRENMAGGPPPQR 245          
The following BLAST results are available for this feature:
BLAST of DY305300 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 2
Match NameE-valueIdentityDescription
DAG_ANTMA7.070e-7688.59DAG protein, chloroplastic OS=Antirrhinum majus GN... [more]
UMP1_ARATH8.183e-3242.17Uncharacterized protein At3g15000, mitochondrial O... [more]
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Properties
Property NameValue
Genbank descriptionKN0AAH3BB09RM1 PhII-III-Vesicles1 Citrus clementina cDNA 5, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>DY305300 ID=DY305300; Name=DY305300; organism=Citrus clementina; type=EST; length=793bp
GGAAGCAGCAGCAATGAGCCGAGGGAGACGATTATGTTACCGGGATGTGA
CTACAACCACTGGCTTATTGTCATGGAGTTCCCCAAGGACCCTGCTCCCA
CGAGAGAGCAGATGATTGAAACTTATCTCAATACTCTTGCCACTGTTCTT
GGAAGCATGGAAGAAGCAAAGAAGAATATGTATGCTTTTAGCACCACTAC
TTACACTGGATTCCAATGCACAGTATCCGAAGAAACCTCAGAGAAATTCA
AAGGCCTGCCTGGTGTTCTTTGGGTGTTGCCCGATTCATACATAGATGTC
AAAAATAAAGATTATGGAGGTGATAAATATGTCAATGGAGAGATCATTCC
CTGCACATATCCCACTTATCAGCCAAACAAACGAAAAGAATCAAAATATG
TGAGCAAAAGATATGAGAGACGAAGAGATGGCCCTCCTGCTGAAAGAAGA
ACGAGACAAGCAGCTGGTCAGTCAGAATCAGCGTCGTCATAAGTTTGCGA
CTCCAAAAGCCAATCATACTACTGCCACCATGCGTATCAGCAGTCTAATC
AAGACACCTGTTTTATGAGTTCTCAAGCTGTTCTTGGTAGTTTTTGTAAT
GGATATCATTTAATGTAGTTAGGATAGAAATTCTCTGGTAATCGCCATCA
TTTAGTTTTGTGCCTCTGGGCTTGTTATTTGAAATGTTGTCCACTGACAT
TTCATGGTTGCCGAAGGTCTGCTGTCTATTGTCTAAAAGTACTGTTGTGT
CAGATTTCTCATTTAGCTTTAATATATAAAGTTAATTTTGCCG
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