DY305335

Overview
NameDY305335
Unique NameDY305335
TypeEST
OrganismCitrus clementina (Clementine)
Sequence length1287
Libraries
Library NameType
PhII-III-Vesicles1cdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Alignments
Feature NameTypeLocationAnalysis
DY305335_ssr290 microsatellite DY305335_ssr290:290..301. BLAST: Citrus ESTs to Prunus persica proteins V1
Ccv1_Contig16 contig Ccv1_Contig16:603..1889. BLAST: Citrus Unigene V1 Contigs to Prunus persica proteins V1
Homology
BLAST of DY305335 vs. ExPASy Swiss-Prot
Match: FBK15_ARATH (F-box/kelch-repeat protein At1g26930 OS=Arabidopsis thaliana GN=At1g26930 PE=2 SV=1)

HSP 1 Score: 187.193 bits (474), Expect = 1.822e-46
Identity = 92/196 (46.94%), Postives = 124/196 (63.27%), Query Frame = 2
Query:  368 SDSLLPGLVDDVALNCLAFACTSDYASLLFINKRFHKLIKSGYLYGLRKQLGIVEHWVYLVCDPRGWEAFDPMKKKWMALPKIPCDECFNHADKESLAVGSELLVFGRELFDFAIWKYSLVFRSWMKCEGMNHPRCLFGSCSLGSIAVIAGGSDKNGHVLKSAEYMTPPQAEWKMLTPLPSPP*NGVLAFFLDGKF 955
            S +L+PG+  D +L+CL     +DY S+  +N+    LI+SG +Y LR+  G +EHWVY  C    WEAFDP  K+WM LP +P +ECF +ADKESLAVG++LLVFG E+  + I++YSL+  SW   + MN PRCLFGS S G IAV+AGG D +G +L +AE        W +L P  +         F+DGKF
Sbjct:   68 SGTLIPGMNRDDSLSCLIRCSRADYCSIASVNRSLRSLIRSGEIYRLRRLQGTLEHWVYFSCHLNEWEAFDPRSKRWMHLPSMPQNECFRYADKESLAVGTDLLVFGWEVSSYVIYRYSLLTNSWSTAKSMNMPRCLFGSASYGEIAVLAGGCDSSGRILDTAELYNYEDQTWLVL-PGMNKRRKMCSGVFMDGKF 262          
BLAST of DY305335 vs. ExPASy Swiss-Prot
Match: FBK29_ARATH (F-box/kelch-repeat protein At1g74510 OS=Arabidopsis thaliana GN=At1g74510 PE=2 SV=1)

HSP 1 Score: 175.637 bits (444), Expect = 5.487e-43
Identity = 88/189 (46.56%), Postives = 115/189 (60.85%), Query Frame = 2
Query:  389 LVDDVALNCLAFACTSDYASLLFINKRFHKLIKSGYLYGLRKQLGIVEHWVYLVCDPRGWEAFDPMKKKWMALPKIPCDECFNHADKESLAVGSELLVFGRELFDFAIWKYSLVFRSWMKCEGMNHPRCLFGSCSLGSIAVIAGGSDKNGHVLKSAEYMTPPQAEWKMLTPLPSPP*NGVLAFFLDGKF 955
            L  +  LNCLA    SD+ S+   N+ F  LIK   LY LR+  GIVEHW+Y  C    WEA+DP   +W+ +PK+  +ECF  +DKESLAVG+ELLVFG+E+    I++YS++  +W     MN PRCLFGS SLG IAVIAGG D  G +L SAE       EW ++ P  +       + F+DG F
Sbjct:   99 LDQNALLNCLAHCSLSDFGSIASTNRTFRSLIKDSELYRLRRAKGIVEHWIYFSCRLLEWEAYDPNGDRWLRVPKMTFNECFMCSDKESLAVGTELLVFGKEIMSHVIYRYSILTNTWTSGMQMNVPRCLFGSASLGEIAVIAGGCDPRGRILSSAELYNSETGEWTVI-PSMNKARKMCSSVFMDGNF 286          
BLAST of DY305335 vs. ExPASy Swiss-Prot
Match: SKI11_ARATH (F-box/kelch-repeat protein SKIP11 OS=Arabidopsis thaliana GN=SKIP11 PE=1 SV=2)

HSP 1 Score: 170.629 bits (431), Expect = 1.765e-41
Identity = 92/206 (44.66%), Postives = 119/206 (57.77%), Query Frame = 2
Query:  341 NDGCCRIGPSDSLLPGLVDDVALNCLAFACTSDYASLLFINKRFHKLIKSGYLYGLRKQLGIVEHWVYLVCDPRGWEAFDPMKKKWMALPKIPCDECFNHADKESLAVGSELLVFGRELF-DFAIWKYSLVFRSWMKCEGMNHPRCLFGSCSLGSIAVIAGGSDKNGHVLKSAEYMTPPQAEWKMLTPLPSPP*NGVLAFFLDGKF 955
            ND       S SL+  +  D +++CL     SDY S+  +N+ F  L+KSG +Y LR+Q G VEHWVY  C    W AFDP++++WM LP +P    F  ADKESLAVG++LLV G++ F    I++YSL+  SW     MN PRCLFGS SLG IA+ AGG D  G +L  AE        W  L P  + P       F+DGKF
Sbjct:  105 NDNGGDSSDSHSLINEIGRDNSIDCLIRCSRSDYGSIASLNRNFRSLVKSGEIYRLRRQNGFVEHWVYFSCQLLEWVAFDPVERRWMQLPTMPSSVTFMCADKESLAVGTDLLVLGKDDFSSHVIYRYSLLTNSWSSGMKMNSPRCLFGSASLGEIAIFAGGCDSQGKILDFAEMYNSELQTWITL-PRMNKPRKMCSGVFMDGKF 309          
BLAST of DY305335 vs. ExPASy Swiss-Prot
Match: FBK70_ARATH (F-box/kelch-repeat protein At3g27150 OS=Arabidopsis thaliana GN=At3g27150 PE=2 SV=1)

HSP 1 Score: 104.76 bits (260), Expect = 1.189e-21
Identity = 60/177 (33.90%), Postives = 91/177 (51.41%), Query Frame = 2
Query:  380 LPGLVDDVALNCLAFACTSDYASLLFINKRFHKLIKSGYLYGLRKQLGIVEHWVYLVCD-PRGWEAFDPMKKKWMALPKIPCDECFNHADKESLAVGSELLVFGRELFDFAIWKYSLVFRSWMKCEGMNHPRCLFGSCSLGSIAVIAGGSDKNGH----VLKSAEYMTPPQAEWKML 895
            +P LV ++ +  LA     +Y  L  +NK F +L+KS  ++ +R++ G+VE  V+++      W  FD        LP++P D CF H DKESL  G+ L+V G+E    A+W+Y L    W K   M  PR LF S + G++  +AGG    G+    V+ S E        W +L
Sbjct:   71 VPQLVYELEVEILARVPRFEYWKLKLLNKGFSRLLKSDEIFKVRRERGVVEPSVFMLSSGDTCWTMFDKGFGNCQKLPELPSDICFLHGDKESLCAGTHLIVTGKEEKSIALWRYELETSKWFKGPAMITPRILFASATCGTVVFVAGGLKIEGNGTMEVVDSVEKYDSKTKTWTLL 247          
BLAST of DY305335 vs. ExPASy Swiss-Prot
Match: FBK22_ARATH (F-box/kelch-repeat protein At1g55270 OS=Arabidopsis thaliana GN=At1g55270 PE=2 SV=1)

HSP 1 Score: 84.3445 bits (207), Expect = 1.664e-15
Identity = 57/193 (29.53%), Postives = 87/193 (45.08%), Query Frame = 2
Query:  377 LLPGLVDDVALNCLAFACTSDYASLLFINKRFHKLIKSGYLYGLRKQLGIVEHWVYLVCDPR----GWEAFDPMKKKWMALPKIPCDECFNHADKESLAV--GSELLVFG----------RELFDFAIWKYSLVFRSWMKCEGMNHPRCLFGSCSLGSIAVIAGGSDKN-GHVLKSAEYMTPPQAEWKMLTPL 904
            LLPGL DD+A+ CL     +++  L  + KR+++L    + Y  RK LG+ E WVY+    R     W  FDP+ + W  LP +P +  ++ A     AV  G  L +FG          R +F      Y+     W +   M   R  FG C + +   +AGG  +     L+SAE   P +  W  +  +
Sbjct:   78 LLPGLPDDLAVACLIRVPRAEHRKLRLVCKRWYRLASGNFFYSQRKLLGMSEEWVYVFKRDRDGKISWNTFDPISQLWQPLPPVPRE--YSEAVGFGCAVLSGCHLYLFGGKDPLRGSMRRVIF------YNARTNKWHRAPDMLRKRHFFGCCVINNCLYVAGGECEGIQRTLRSAEVYDPNKNRWSFIADM 262          
BLAST of DY305335 vs. ExPASy Swiss-Prot
Match: FBK28_ARATH (F-box/kelch-repeat protein At1g67480 OS=Arabidopsis thaliana GN=At1g67480 PE=2 SV=1)

HSP 1 Score: 74.3294 bits (181), Expect = 1.722e-12
Identity = 47/190 (24.74%), Postives = 82/190 (43.16%), Query Frame = 2
Query:  371 DSLLPGLVDDVALNCLAFACTSDYASLLFINKRFHKLIKSGYLYGLRKQLGIVEHWVYLVCDPRG-----WEAFDPMKKKWMALPKIPCDECFNH----ADKESLAVGSELLVFGRELFDFAIWKYSLVFRSWMKCEGMNHPRCLFGSCSLGSIAVIAGGSDKNGHVLKSAEYMTPPQAEWKMLTPLPSP 913
            D L+PGL DDVA  CLA    + + S+  + K++  +++S     +R+  G++E W+Y++    G     WE  D + +K  +LP +P            D + L +    ++ G  +    +++Y     SW +   +   R  F    +     + GG   +G  L SAE   P    W  +  L  P
Sbjct:   37 DPLIPGLPDDVAKQCLALVPRARFPSMGSVCKKWRFVVQSKEFITVRRLAGMLEEWLYVLTMNAGGKDNRWEVMDCLGQKLSSLPPMPGPAKTGFKVVVVDGKLLVIAGCCMINGSLVASADVYQYDTCLNSWSRLADLEVARYDFACAEVNGHVYVVGGHGVDGESLSSAEVYDPETCTWTFIESLRRP 226          
BLAST of DY305335 vs. ExPASy Swiss-Prot
Match: FBK17_ARATH (F-box/kelch-repeat protein At1g30090 OS=Arabidopsis thaliana GN=At1g30090 PE=2 SV=1)

HSP 1 Score: 70.0922 bits (170), Expect = 3.247e-11
Identity = 59/222 (26.58%), Postives = 93/222 (41.89%), Query Frame = 2
Query:  371 DSLLPGLVDDVALNCLAFACTSDYASLLFINKRFHKLI-KSGYLYGLRKQLGIVEHWVYLVCDPR-----GWEAFDPMKKKWMALPKIPCDE--CFNHADKESLAVGSELLVFGRELFDF-----AIWKYSLVFRSWMKCEGMNHPRCLFGSCSLGSIAVIAGGSDKNGHVLKSAEYMTPPQAEWKMLTPLPSPP*NGVLAFFLDGKFL----WEWVEMSSP 985
            + L+PGL DDVALNCL       + S   + KR+H L       +  RK+ G  + W+++V   R      W+  D     W  +P +PC +  C +     S+     + V G  + D       + KY +V   W     M   R  F S  +  +   AGG+  + + L  AE + P    W+ ++ + +   +   A  L+GK L    W W    SP
Sbjct:   51 EPLIPGLPDDVALNCLLRVPVQSHVSSKSVCKRWHLLFGTKETFFAKRKEFGFKDPWLFVVGFSRCTGKIQWKVLDLRNLTWHEIPAMPCRDKVCPHGFRSVSMPREGTMFVCGGMVSDSDCPLDLVLKYDMVKNHWTVTNKMITARSFFASGVIDGMIYAAGGNAADLYELDCAEVLNPLDGNWRPVSNMVAHMASYDTA-VLNGKLLVTEGWLWPFFVSP 271          
The following BLAST results are available for this feature:
BLAST of DY305335 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 7
Match NameE-valueIdentityDescription
FBK15_ARATH1.822e-4646.94F-box/kelch-repeat protein At1g26930 OS=Arabidopsi... [more]
FBK29_ARATH5.487e-4346.56F-box/kelch-repeat protein At1g74510 OS=Arabidopsi... [more]
SKI11_ARATH1.765e-4144.66F-box/kelch-repeat protein SKIP11 OS=Arabidopsis t... [more]
FBK70_ARATH1.189e-2133.90F-box/kelch-repeat protein At3g27150 OS=Arabidopsi... [more]
FBK22_ARATH1.664e-1529.53F-box/kelch-repeat protein At1g55270 OS=Arabidopsi... [more]
FBK28_ARATH1.722e-1224.74F-box/kelch-repeat protein At1g67480 OS=Arabidopsi... [more]
FBK17_ARATH3.247e-1126.58F-box/kelch-repeat protein At1g30090 OS=Arabidopsi... [more]
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Properties
Property NameValue
Genbank descriptionKN0AAH3BH05RM1 PhII-III-Vesicles1 Citrus clementina cDNA 5, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>DY305335 ID=DY305335; Name=DY305335; organism=Citrus clementina; type=EST; length=1287bp
GGAGAGATGGTTATAAATGAGTCATGTGCTAAGTTTTATGGAAAGAATAT
ATAGGCGGAGGTTCATTGTGTGCAAAGATCGGAATTTGTTTTCTGGTTAT
TGGGAGCGTCATTGAGAATTGTGGGTTGACACTTTCTTTTATCTTTTTAA
ATTTTAATCAAGATTGACTTTTTTTTTTTTATAGAAATTTTGCTTGATTT
TGTTGGATTATAGGAAAAGAATTTTTTTTCTCCCTTTTAACATGATAAAG
AAAGCGCGTTTGGATGATATTATGGAGGAAGTAGAAAAGGAAGAAGAAGA
AGCAGCTAGTTTATCAGTAGTGAGTTGGAAAGCGGGAGTGAATGATGGTT
GTTGTCGGATTGGACCAAGTGATTCACTTCTCCCTGGTCTTGTTGATGAT
GTTGCTTTGAACTGTCTTGCTTTTGCATGTACATCCGACTATGCATCATT
GTTATTTATAAATAAGAGGTTTCATAAGTTAATCAAGAGTGGGTATTTGT
ATGGGTTAAGGAAGCAATTGGGTATTGTGGAGCATTGGGTCTACTTGGTT
TGTGATCCACGGGGTTGGGAGGCATTCGATCCAATGAAAAAGAAGTGGAT
GGCTTTGCCTAAGATCCCTTGTGATGAGTGTTTCAACCATGCAGATAAAG
AGTCCTTGGCTGTGGGTAGTGAATTGTTGGTTTTTGGGCGTGAATTGTTT
GATTTTGCAATTTGGAAGTATAGCTTGGTTTTCCGTAGTTGGATGAAGTG
TGAGGGAATGAACCACCCTCGTTGCTTGTTTGGCTCATGTAGTCTTGGTT
CTATTGCTGTTATTGCAGGTGGCAGTGATAAAAACGGGCATGTTTTAAAA
TCCGCTGAATATATGACTCCCCCACAGGCAGAATGGAAAATGTTAACCCC
CCTGCCTTCCCCCCCGTAAAATGGGGTTCTGGCTTTTTTCTTGGATGGAA
AATTTCTATGGGAATGGGTGGAAATGTCAAGTCCCCCCTGTTTTCCTTTG
ACCCGGGGGGGGAAGAGATTTTGGATCTTAAAACCCCAGAAAATGGGAAG
AAAAAAAAAAAAAGGGGAAGGATCCCCCAATGTGTTCAAATAGGGGCGCG
CACCGGGCCCCCCCCCCCTCCCCTTTTGCCCTTTGTGTGGAAAAATAATC
CAATTTATTATTCCCCCTTTTAGAATTTTTTTTTTAAAAAAAAAACTTGG
GGTCTCAAAAAAAAAATAATGTAAAAAAAAAGTTTTTAAAAAAAAAAAAC
ACAACCGGGGGGGGGGGGAAGTAATGGGGGGGTGTGG
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