DY305339

Overview
NameDY305339
Unique NameDY305339
TypeEST
OrganismCitrus clementina (Clementine)
Sequence length1271
Libraries
Library NameType
PhII-III-Vesicles1cdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of DY305339 vs. ExPASy Swiss-Prot
Match: CYPH_CATRO (Peptidyl-prolyl cis-trans isomerase OS=Catharanthus roseus GN=PCKR1 PE=2 SV=1)

HSP 1 Score: 241.121 bits (614), Expect = 1.046e-62
Identity = 117/158 (74.05%), Postives = 127/158 (80.38%), Query Frame = 1
Query:  358 MPNPKVFFDMTVGGQPAGRIVMELFADVTPRTAENFRALCTGEKGIGKSGKPLHYKGSSFHRVIPGFMCQXXXXXXXXXXXXESIYGSKFADENFVKKHTGPGILSMANAGPGTNGSHFFRCTGQTEWLNGKHFVFCQVFQWIGLHKAF*KRGPISER 831
            MPNP+VFFDM+VGGQPAGRIVMELFAD TPRTAENFRALCTGEKG G+SGKPLHYK SSFHRVIPGFMCQ            ESIYG+KFADENF+KKHTGPGILSMANAGP TNGS FF CT +TEWL+GKH VF QV + + + KA  K G  S R
Sbjct:    1 MPNPRVFFDMSVGGQPAGRIVMELFADTTPRTAENFRALCTGEKGTGRSGKPLHYKDSSFHRVIPGFMCQGGDFTAGNGTGGESIYGAKFADENFIKKHTGPGILSMANAGPNTNGSQFFICTAKTEWLDGKHVVFGQVVEGMDVVKAIEKVGSSSGR 158          
BLAST of DY305339 vs. ExPASy Swiss-Prot
Match: CYPH_SOLLC (Peptidyl-prolyl cis-trans isomerase OS=Solanum lycopersicum GN=CYP PE=2 SV=1)

HSP 1 Score: 235.343 bits (599), Expect = 5.740e-61
Identity = 110/147 (74.83%), Postives = 121/147 (82.31%), Query Frame = 1
Query:  358 MPNPKVFFDMTVGGQPAGRIVMELFADVTPRTAENFRALCTGEKGIGKSGKPLHYKGSSFHRVIPGFMCQXXXXXXXXXXXXESIYGSKFADENFVKKHTGPGILSMANAGPGTNGSHFFRCTGQTEWLNGKHFVFCQVFQWIGLHK 798
            M NPKVFFD+T+GG PAGR+VMELFAD TP+TAENFRALCTGEKG+GK GKPLHYKGS+FHRVIPGFMCQ            ESIYG+KF DENFVKKHTGPGILSMANAGPGTNGS FF CT +TEWLNGKH VF QV + + + K
Sbjct:    1 MANPKVFFDLTIGGAPAGRVVMELFADTTPKTAENFRALCTGEKGVGKMGKPLHYKGSTFHRVIPGFMCQGGDFTAGNGTGGESIYGAKFNDENFVKKHTGPGILSMANAGPGTNGSQFFICTAKTEWLNGKHVVFGQVVEGMDVIK 147          
BLAST of DY305339 vs. ExPASy Swiss-Prot
Match: CYPH_LUPLU (Peptidyl-prolyl cis-trans isomerase OS=Lupinus luteus PE=2 SV=1)

HSP 1 Score: 225.328 bits (573), Expect = 5.940e-58
Identity = 106/153 (69.28%), Postives = 121/153 (79.08%), Query Frame = 1
Query:  358 MPNPKVFFDMTVGGQPAGRIVMELFADVTPRTAENFRALCTGEKGIGKSGKPLHYKGSSFHRVIPGFMCQXXXXXXXXXXXXESIYGSKFADENFVKKHTGPGILSMANAGPGTNGSHFFRCTGQTEWLNGKHFVFCQVFQWIGLHKAF*KRG 816
            M NPKVFFDM + G PAGRIVMEL+AD TPRTAENFRALCTGEKG+G+SGKPLHYKGS+FHRVIP FMCQ            ESIYG+KFADENF+K+HTGPGILSMANAG GTNGS FF CT +TEWL+GKH VF +V + + + +   K G
Sbjct:    1 MSNPKVFFDMAIAGNPAGRIVMELYADTTPRTAENFRALCTGEKGVGRSGKPLHYKGSTFHRVIPNFMCQGGDFTAGNGTGAESIYGAKFADENFIKRHTGPGILSMANAGAGTNGSQFFICTEKTEWLDGKHVVFGKVIEGMNVVRDIEKVG 153          
BLAST of DY305339 vs. ExPASy Swiss-Prot
Match: CP19A_ARATH (Peptidyl-prolyl cis-trans isomerase CYP19-1 OS=Arabidopsis thaliana GN=CYP19-1 PE=1 SV=1)

HSP 1 Score: 220.705 bits (561), Expect = 1.463e-56
Identity = 108/156 (69.23%), Postives = 119/156 (76.28%), Query Frame = 1
Query:  364 NPKVFFDMTVGGQPAGRIVMELFADVTPRTAENFRALCTGEKGIGKSGKPLHYKGSSFHRVIPGFMCQXXXXXXXXXXXXESIYGSKFADENFVKKHTGPGILSMANAGPGTNGSHFFRCTGQTEWLNGKHFVFCQVFQWIGLHKAF*KRGPISER 831
            NPKV+FDMTVGG+ AGRIVMEL+AD TP TAENFRALCTGE+GIGK GKPLHYKGSSFHRVIP FMCQ            ESIYGSKF DENF+KKHTGPGILSMANAG  TNGS FF CT +T WL+GKH VF QV + + + +   K G  S R
Sbjct:    4 NPKVYFDMTVGGKSAGRIVMELYADTTPETAENFRALCTGERGIGKQGKPLHYKGSSFHRVIPKFMCQGGDFTAGNGTGGESIYGSKFKDENFIKKHTGPGILSMANAGANTNGSQFFICTEKTSWLDGKHVVFGQVVEGLNVVRDIEKVGSDSGR 159          
BLAST of DY305339 vs. ExPASy Swiss-Prot
Match: CP19B_ARATH (Peptidyl-prolyl cis-trans isomerase CYP19-2 OS=Arabidopsis thaliana GN=CYP19-2 PE=1 SV=1)

HSP 1 Score: 218.009 bits (554), Expect = 9.484e-56
Identity = 104/154 (67.53%), Postives = 120/154 (77.92%), Query Frame = 1
Query:  364 NPKVFFDMTVGGQPAGRIVMELFADVTPRTAENFRALCTGEKGIGKSGKPLHYKGSSFHRVIPGFMCQXXXXXXXXXXXXESIYGSKFADENFVKKHTGPGILSMANAGPGTNGSHFFRCTGQTEWLNGKHFVFCQVFQWIGLHKAF*KRGPIS 825
            +PKVFFDMT+GG PAG+IVMEL+ D TP+TAENFRALCTGEKG+G+SGKPLH+KGSSFHRVIP FMCQ            ESIYG+KF DENF +KHTGPGILSMANAG  TNGS FF CT +T+WL+GKH VF QV + + + KA  K G  S
Sbjct:    4 HPKVFFDMTIGGAPAGKIVMELYTDKTPKTAENFRALCTGEKGVGRSGKPLHFKGSSFHRVIPNFMCQGGDFTKGNGTGGESIYGAKFEDENFERKHTGPGILSMANAGANTNGSQFFICTVKTDWLDGKHVVFGQVVEGLDVVKAIEKIGSSS 157          
BLAST of DY305339 vs. ExPASy Swiss-Prot
Match: CP18C_ARATH (Peptidyl-prolyl cis-trans isomerase CYP18-3 OS=Arabidopsis thaliana GN=CYP18-3 PE=1 SV=1)

HSP 1 Score: 215.698 bits (548), Expect = 4.707e-55
Identity = 105/156 (67.31%), Postives = 118/156 (75.64%), Query Frame = 1
Query:  358 MPNPKVFFDMTVGGQPAGRIVMELFADVTPRTAENFRALCTGEKGIGKSGKPLHYKGSSFHRVIPGFMCQXXXXXXXXXXXXESIYGSKFADENFVKKHTGPGILSMANAGPGTNGSHFFRCTGQTEWLNGKHFVFCQVFQWIGLHKAF*KRGPIS 825
            M  PKV+FDMT+ GQPAGRIVMEL+ D TPRTAENFRALCTGEKG+G +GKPLH+KGS FHRVIP FMCQ            ESIYGSKF DENF +KHTGPGILSMANAG  TNGS FF CT +T+WL+GKH VF QV + + + KA  K G  S
Sbjct:    1 MAFPKVYFDMTIDGQPAGRIVMELYTDKTPRTAENFRALCTGEKGVGGTGKPLHFKGSKFHRVIPNFMCQGGDFTAGNGTGGESIYGSKFEDENFERKHTGPGILSMANAGANTNGSQFFICTVKTDWLDGKHVVFGQVVEGLDVVKAIEKVGSSS 156          
BLAST of DY305339 vs. ExPASy Swiss-Prot
Match: CP18D_ARATH (Peptidyl-prolyl cis-trans isomerase CYP18-4 OS=Arabidopsis thaliana GN=CYP18-4 PE=1 SV=1)

HSP 1 Score: 214.542 bits (545), Expect = 1.049e-54
Identity = 103/153 (67.32%), Postives = 116/153 (75.82%), Query Frame = 1
Query:  358 MPNPKVFFDMTVGGQPAGRIVMELFADVTPRTAENFRALCTGEKGIGKSGKPLHYKGSSFHRVIPGFMCQXXXXXXXXXXXXESIYGSKFADENFVKKHTGPGILSMANAGPGTNGSHFFRCTGQTEWLNGKHFVFCQVFQWIGLHKAF*KRG 816
            M NP+VFFDM++ G P GRI MELFAD TP TAENFRALCTGEKG+GK GKPLH+KGS FHRVIPGFMCQ            ESIYG+KF DENF+KKHTG GILSMAN+GP TNGS FF CT +T WL+GKH VF QV + + + KA  K G
Sbjct:    1 MSNPRVFFDMSLSGTPIGRIEMELFADTTPNTAENFRALCTGEKGMGKLGKPLHFKGSIFHRVIPGFMCQGGDFTAKNGTGGESIYGAKFKDENFIKKHTGAGILSMANSGPNTNGSQFFICTDKTSWLDGKHVVFGQVVKGLDVVKAIEKVG 153          
BLAST of DY305339 vs. ExPASy Swiss-Prot
Match: CYPH_BRANA (Peptidyl-prolyl cis-trans isomerase OS=Brassica napus GN=CYP PE=2 SV=2)

HSP 1 Score: 213.386 bits (542), Expect = 2.336e-54
Identity = 106/158 (67.09%), Postives = 117/158 (74.05%), Query Frame = 1
Query:  358 MPNPKVFFDMTVGGQPAGRIVMELFADVTPRTAENFRALCTGEKGIGKSGKPLHYKGSSFHRVIPGFMCQXXXXXXXXXXXXESIYGSKFADENFVKKHTGPGILSMANAGPGTNGSHFFRCTGQTEWLNGKHFVFCQVFQWIGLHKAF*KRGPISER 831
            M NPKV+FDMTVG + AGRIVMEL+AD  P TAENFRALCTGE+GIGKSGKPLHYKGS+FHRVIP FMCQ            ESIYG KF DENFVKKHTGPGILSM NAG  TNGS FF CT +T WL+GKH VF QV + + + +   K G  S R
Sbjct:    1 MVNPKVYFDMTVGDKAAGRIVMELYADTVPETAENFRALCTGERGIGKSGKPLHYKGSAFHRVIPKFMCQGGDFTAGNGTGGESIYGMKFKDENFVKKHTGPGILSMRNAGSNTNGSQFFICTEKTSWLDGKHVVFGQVVEGMDVVRDIEKVGSDSGR 158          
BLAST of DY305339 vs. ExPASy Swiss-Prot
Match: CYPH_MAIZE (Peptidyl-prolyl cis-trans isomerase OS=Zea mays GN=CYP PE=2 SV=1)

HSP 1 Score: 212.231 bits (539), Expect = 5.204e-54
Identity = 103/153 (67.32%), Postives = 115/153 (75.16%), Query Frame = 1
Query:  358 MPNPKVFFDMTVGGQPAGRIVMELFADVTPRTAENFRALCTGEKGIGKSGKPLHYKGSSFHRVIPGFMCQXXXXXXXXXXXXESIYGSKFADENFVKKHTGPGILSMANAGPGTNGSHFFRCTGQTEWLNGKHFVFCQVFQWIGLHKAF*KRG 816
            M NP+VFFDMTVGG PAGRIVMEL+A+  P+TAENFRALCTGEKG+GKSGKPLHYKGS+FHRVIP FMCQ            ESIYG KF DE FV+K   PG+LSMANAGP TNGS FF CT  T WL+GKH VF QV + + + KA  K G
Sbjct:    1 MANPRVFFDMTVGGAPAGRIVMELYANEVPKTAENFRALCTGEKGVGKSGKPLHYKGSTFHRVIPEFMCQGGDFTRGNGTGGESIYGEKFPDEKFVRKQPAPGVLSMANAGPNTNGSQFFICTVATPWLDGKHVVFGQVVEGMDVVKAIEKVG 153          
BLAST of DY305339 vs. ExPASy Swiss-Prot
Match: CP19C_ARATH (Peptidyl-prolyl cis-trans isomerase CYP19-3 OS=Arabidopsis thaliana GN=CYP19-3 PE=1 SV=2)

HSP 1 Score: 210.69 bits (535), Expect = 1.514e-53
Identity = 101/148 (68.24%), Postives = 112/148 (75.68%), Query Frame = 1
Query:  358 MPNPKVFFDMTVGGQPAGRIVMELFADVTPRTAENFRALCTGEKGIGKSGKPLHYKGSSFHRVIPGFMCQXXXXXXXXXXXXESIYGSKFADENFVKKHTGPGILSMANAGPGTNGSHFFRCTGQTEWLNGKHFVFCQVFQWIGLHKA 801
            M NPKVFFD+ +G   AGR+VMELFADVTPRTA NFRALCTGE GIGK+GK LHYKGS+FHR+IPGFMCQ            ESIYGSKF DENF  KHTGPGILSMAN+GP TNGS FF CT +T WL+GKH VF +V     + KA
Sbjct:    1 MANPKVFFDILIGKMKAGRVVMELFADVTPRTANNFRALCTGENGIGKAGKALHYKGSAFHRIIPGFMCQGGDFTRGNGTGGESIYGSKFEDENFKLKHTGPGILSMANSGPNTNGSQFFICTEKTSWLDGKHVVFGKVVDGYNVVKA 148          
The following BLAST results are available for this feature:
BLAST of DY305339 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 207
Match NameE-valueIdentityDescription
CYPH_CATRO1.046e-6274.05Peptidyl-prolyl cis-trans isomerase OS=Catharanthu... [more]
CYPH_SOLLC5.740e-6174.83Peptidyl-prolyl cis-trans isomerase OS=Solanum lyc... [more]
CYPH_LUPLU5.940e-5869.28Peptidyl-prolyl cis-trans isomerase OS=Lupinus lut... [more]
CP19A_ARATH1.463e-5669.23Peptidyl-prolyl cis-trans isomerase CYP19-1 OS=Ara... [more]
CP19B_ARATH9.484e-5667.53Peptidyl-prolyl cis-trans isomerase CYP19-2 OS=Ara... [more]
CP18C_ARATH4.707e-5567.31Peptidyl-prolyl cis-trans isomerase CYP18-3 OS=Ara... [more]
CP18D_ARATH1.049e-5467.32Peptidyl-prolyl cis-trans isomerase CYP18-4 OS=Ara... [more]
CYPH_BRANA2.336e-5467.09Peptidyl-prolyl cis-trans isomerase OS=Brassica na... [more]
CYPH_MAIZE5.204e-5467.32Peptidyl-prolyl cis-trans isomerase OS=Zea mays GN... [more]
CP19C_ARATH1.514e-5368.24Peptidyl-prolyl cis-trans isomerase CYP19-3 OS=Ara... [more]

Pages

back to top
Properties
Property NameValue
Genbank descriptionKN0AAH3CA03RM1 PhII-III-Vesicles1 Citrus clementina cDNA 5, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>DY305339 ID=DY305339; Name=DY305339; organism=Citrus clementina; type=EST; length=1271bp
TGCCGAATTCGGCACGAGGTTGCTGGCGACGGCAAGGAGAATGGCCTCAT
TAGCAACCACTTCAGAGTCCAGGCGGTACTGCTGGCCTAACATGTAATGC
CCCACGTAGTCTGCACATTTTTCGGGAACAGTCGCCCATCCTATAACGTT
ATTAGTTTCCACTCCGAGTCGCCAACTCAGGCAGGACAAGCCGGGCACAT
CGTTGTTCCGGGAACCGGCTTTCGGTCGGAGAAGATGAATCTGATGGGGG
ATGTCCATGCTAAATCCATGGGATGTTGCTGCCTCGTGCCGAATTCGGCA
CGAGGATCAGAAGTCCGTGTTTAGTTTGTTTTTTTCTCTCCAATCAACCA
ATCAAAAATGCCAAACCCCAAAGTGTTCTTCGACATGACCGTCGGCGGTC
AGCCCGCCGGCAGGATCGTGATGGAGCTCTTCGCCGATGTCACCCCCCGA
ACCGCCGAGAACTTCCGCGCCCTCTGCACCGGCGAGAAAGGCATCGGCAA
GTCCGGCAAGCCACTCCACTACAAGGGCTCGTCCTTCCACCGTGTGATCC
CCGGATTCATGTGCCAGGGGGGAGACTTCACCGCCGGAAACGGAACCGGA
GGCGAATCAATCTACGGCTCAAAATTCGCCGATGAGAACTTCGTGAAAAA
GCACACCGGCCCCGGAATCCTCTCCATGGCGAATGCCGGACCCGGAACCA
ACGGATCTCATTTCTTCCGCTGTACGGGCCAGACCGAATGGCTCAATGGG
AAGCACTTTGTGTTCTGTCAAGTCTTCCAATGGATTGGACTCCACAAGGC
CTTCTAAAAGCGGGGTCCTATTTCCGAAAGGAACTAAATCCCCTCCATGA
ACCGGTGATATGCGAGAAATTGTCTTAAAATTAATGTTGATAAGGATAAC
CCTCAAAAAGAACCTGTGAGACGCCGATCGGAATGGGCATTTTGGATTCA
CTTTATATTGTGGCCCACCCCTGCGGGAAACCTTATCCCCCTATAAGCAG
ATATCCCCAGCATAAAAACCCGTGACAGCCAGTAACAAGCTACCTCCCGA
TAGCTGGCACTTGCTTATAAAATACCTATAAAGACCACTTTATCACTACC
AGACCCATATTAACCCCATAGAGTTTTGACCCTATGACATACCAGAAAAA
CGTTAAAGATTGATAAAGACATTAAATTTTGTTAATGCAGAGCGGACGCT
TCACGTATCTGATAATACACTTAAAGCCTCCTATTCATTATAGGATTAAG
ATCCGTTACTAAATACAATAC
back to top