DY305351

Overview
NameDY305351
Unique NameDY305351
TypeEST
OrganismCitrus clementina (Clementine)
Sequence length1272
Libraries
Library NameType
PhII-III-Vesicles1cdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Alignments
Feature NameTypeLocationAnalysis
DY305351_ssr55 microsatellite DY305351_ssr55:55..66. BLAST: Citrus ESTs to Prunus persica proteins V1
Ccv1_Contig9286 contig Ccv1_Contig9286:1..1272. BLAST: Citrus Unigene V1 Contigs to Prunus persica proteins V1
Homology
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BLAST of DY305351 vs. ExPASy Swiss-Prot
Match: PMP22_ARATH (Peroxisomal membrane protein PMP22 OS=Arabidopsis thaliana GN=PMP22 PE=1 SV=1)

HSP 1 Score: 149.828 bits (377), Expect = 1.967e-42
Identity = 73/116 (62.93%), Postives = 82/116 (70.69%), Query Frame = 2 
Query:  332 FGCAYLGSFGPFLHVILDNIFKGKKDTSTGAGKVVLEQLTSSPWNNLMFMIYYGVGVEGGPWRDVKTEIKKDYPTGQYTSWTFWPVVGWINHLYVALRFRVIFHSLFAMCWGICLT 679
            F   +LG  G F H  LD  FKGKKDT T A KV+LEQLT SP N+L+FMIYYGV +E  PW  V+  IKK YPT Q T+WTF+PVVGWIN+ YV L FRVI HSL A  WGI LT
Sbjct:   61 FAGGFLGPAGHFFHTYLDKFFKGKKDTQTVAKKVILEQLTLSPLNHLLFMIYYGVVIERTPWTLVRERIKKTYPTVQLTAWTFFPVVGWINYKYVPLHFRVILHSLVAFFWGIFLT 176

HSP 2 Score: 45.4394 bits (106), Expect = 1.967e-42
Identity = 22/42 (52.38%), Postives = 33/42 (78.57%), Query Frame = 1 
Query:  172 KKGLKQCLVRVRLNPLGRKAVTAGVLSGIIDMVAQRLRGIQK 297
            K  L++ L +++ +PL  KA+TAGVLSG+ D+V+Q+L GIQK
Sbjct:    8 KTTLQRYLSQLQQHPLRTKAITAGVLSGVSDVVSQKLSGIQK 49
The following BLAST results are available for this feature:
BLAST of DY305351 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 1
Match NameE-valueIdentityDescription
PMP22_ARATH1.967e-4262.93Peroxisomal membrane protein PMP22 OS=Arabidopsis ... [more]
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Properties
Property NameValue
Genbank descriptionKN0AAH3CC06RM1 PhII-III-Vesicles1 Citrus clementina cDNA 5, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>DY305351 ID=DY305351; Name=DY305351; organism=Citrus clementina; type=EST; length=1272bp
GGTTTGCCAGCAGCACAAAGTACTAGTAAGAGCTAGTCCCTTACCCGTAT
TATGATTATTATTATTACAATTATTATTCTCCCCATTTCCATTTCCTTCT
CTCTCTTTAAAATTGCGCGAAGAAGAGCAGAAGGAATAATAAATTTTACT
GAGGAGATGGGATCGGTTGCCAAGAAAGGTTTGAAACAGTGCTTGGTACG
AGTTCGGCTGAACCCTTTGGGAAGAAAGGCTGTAACTGCGGGAGTGTTGT
CAGGAATCATCGACATGGTTGCTCAGAGACTCCGTGGCATTCAGAAAGCT
TGGGCTGAGGAGGCTACTTGTGAAAGGGCGTTTTGGATGTGCTTATCTTG
GATCGTTCGGACCTTTCCTGCATGTAATCCTGGATAATATTTTCAAGGGG
AAAAAAGATACCAGTACAGGGGCGGGGAAGGTGGTGTTGGAACAGTTGAC
ATCTTCTCCTTGGAACAACTTGATGTTTATGATTTACTATGGGGTTGGTG
TTGAAGGAGGACCTTGGAGGGATGTGAAAACTGAAATCAAGAAGGACTAC
CCGACAGGGCAGTATACATCATGGACGTTCTGGCCTGTTGTGGGGTGGAT
AAATCATCTATATGTAGCACTGCGGTTCCGTGTGATTTTCCACAGCTTGT
TTGCAATGTGTTGGGGGATATGTCTGACTCTTCCGGCTTTGCCTAAAGCT
GCCTGACTCGGAATATCCCTATGCACGTCAGTGTAATAATGCATGTTACG
TCGAGGCGCGTTCTTATGTGGATCAAAATACATTACTGGCAGACAAGAAA
ACTATGGTGATTAGTCACTATCCTTCTGACTAGGTCGATGGATTAATGGA
GGGTATCATTTACCGTAATTCTCTTGTTTGGGTTTGAGGGAGAAAAAAAA
AAAAAAAAAAGAAAAAAAAAAAGGCCGAGGGGGGGGGCCGGGCTTCCCAG
TGGACACTCGGGGGGGGTTGAATAAAAATGAAAGGGGACAATCGTTTAAG
GAGGGCCGGGCGGGGGAGAAACCCCGGGGGTTACCCCACTCTTATTCCCC
TTTTACCCCCCCTCCCCCCTTTTCTCCCTAGTGGGGGGTAAAAAAGGGAA
AAAGGGCCGCGGCCCCCTTTTTTTCCCTTTCTCAAAAAAGGTGGGGCCCC
CCCCCAGATGGGGGGAAAAGGTGTTTAATATTGGTATACCCCCTTATAAA
ATATTTTTTGTTTTTGAAAAATTTACGCCCCGTTAATAAAATTTTTTTTT
TTGTTTATAAATTGCCCCCCCC
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