DY305362

Overview
NameDY305362
Unique NameDY305362
TypeEST
OrganismCitrus clementina (Clementine)
Sequence length1272
Libraries
Library NameType
PhII-III-Vesicles1cdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Alignments
Feature NameTypeLocationAnalysis
Ccv1_Contig9287 contig Ccv1_Contig9287:1..1272. BLAST: Citrus Unigene V1 Contigs to Prunus persica proteins V1
Homology
BLAST of DY305362 vs. ExPASy Swiss-Prot
Match: KCO1_ARATH (Calcium-activated outward-rectifying potassium channel 1 OS=Arabidopsis thaliana GN=KCO1 PE=1 SV=2)

HSP 1 Score: 195.282 bits (495), Expect = 6.605e-49
Identity = 121/259 (46.72%), Postives = 157/259 (60.62%), Query Frame = 1
Query:  235 MASNGANQPLL-SGFVDSTSQTNNKDA----PKRRRLRRCRSAPQTDVAALD---INEKDSTHLSESLFGKPRPNFKRVLVYLAAYLGGGSLSFYAVNSQIEGLKTNEILDSIYFCIVTMTTVGYGDLVPNSVVSKLLSCAFVFTGMGLVGLFLSKAADYLVDKQEILLVKALHRYQKVGPTDILKEIETHKVRYKCXXXXXXXXXXXXXGDIFRVVG*ENELC*SLPFVFVQPSPTLGYGEQKLLNYGKG---VPFWV 978
            M+S+ A  PLL +  +D+ +Q  N ++     ++RRLRR RSAP+ D    D   I+E         +F    PN +RV+++LA YL  G+L FY V  QI G KT+ ++D++YFCIVTMTTVGYGDLVPNS  S+LL+CAFVF+GM LVG  LS+AADYLV+KQE LLV+A H  Q  GPTDILKE+ T+K+RYKC             G IF V+  E     S  +       TLGYG+ K  N   G     FW+
Sbjct:    1 MSSDAARTPLLPTEKIDTMAQDFNLNSRTSSSRKRRLRRSRSAPRGDCMYNDDVKIDEPPPHPSKIPMFSDLNPNLRRVIMFLALYLTIGTLCFYLVRDQISGHKTSGVVDALYFCIVTMTTVGYGDLVPNSSASRLLACAFVFSGMVLVGHLLSRAADYLVEKQEALLVRAFHLRQSFGPTDILKELHTNKLRYKCYATCLVLVVLFIVGTIFLVMV-EKMPVISAFYCVCSTVTTLGYGD-KSFNSEAGRLFAVFWI 257          
BLAST of DY305362 vs. ExPASy Swiss-Prot
Match: KCO6_ARATH (Probable calcium-activated outward-rectifying potassium channel 6 OS=Arabidopsis thaliana GN=KCO6 PE=2 SV=1)

HSP 1 Score: 84.7297 bits (208), Expect = 1.257e-15
Identity = 49/139 (35.25%), Postives = 72/139 (51.80%), Query Frame = 1
Query:  328 LRRCRSAPQTDVAA---LDINEKDSTHLSESLFGKPRPNFKRVLVYLAAYLGGGSLSFYAVNSQIEGLKTNEILDSIYFCIVTMTTVGYGDLVPNSVVSKLLSCAFVFTGMGLVGLFLSKAADYLVDKQEILLVKALHR 735
            L R ++AP   V       I +KD T  S S+        ++    L  YL  G L ++         +T+ ++D +YFCIVTM T+GYGD+ PNSVV+KL S  FV  G G + + LS    Y++D QE  ++ +  R
Sbjct:  118 LHRSKTAPAMAVINDLHHPIRQKDPTETSRSVV-------RQAFALLVVYLSLGVLIYWLNRDHYVVNQTHPVVDGLYFCIVTMCTIGYGDITPNSVVTKLFSIMFVLVGFGFIDILLSGMVSYVLDLQESYMLDSAKR 249          
BLAST of DY305362 vs. ExPASy Swiss-Prot
Match: KCO5_ARATH (Probable calcium-activated outward-rectifying potassium channel 5, chloroplastic OS=Arabidopsis thaliana GN=KCO5 PE=2 SV=1)

HSP 1 Score: 82.8037 bits (203), Expect = 4.777e-15
Identity = 53/182 (29.12%), Postives = 91/182 (50.00%), Query Frame = 1
Query:  280 DSTSQTNNKDAPKRRRLRRCRSAPQTDVAALDINEKDSTHLSESLFGKPRPNFKRVLVYLAAYLGGGSLSFYAVN-SQIEGLKTNEILDSIYFCIVTMTTVGYGDLVPNSVVSKLLSCAFVFTGMGLVGLFLSKAADYLVDKQEILLVKAL--------HRYQKVGPTDILKEIETHKVRYK 798
            DS S   N+   + R L R R+AP   V   D+  K       S   K     ++ +  L  YL  G +S Y+ N     G++T+ ++D++YFCIVTM T+GYGD+ P +  +K+ +  FV  G G + + LS   +Y++D QE +++  +        H + +    D + + E  ++R +
Sbjct:   68 DSDSDETNRFLSQTRPLHRSRTAPAM-VIIKDLRTKPPETKKPSPVSKSI--IRQAIFLLIVYLTLG-VSIYSFNRDHYSGIETHPVVDALYFCIVTMCTIGYGDIAPLTPWTKIFAVVFVLFGFGFLDILLSGVVNYVLDLQESMILTGIQTRQHHQHHHHHRFSAKDYIIDFEKGRMRIR 245          
BLAST of DY305362 vs. ExPASy Swiss-Prot
Match: KCO2_ARATH (Probable calcium-activated outward-rectifying potassium channel 2 OS=Arabidopsis thaliana GN=KCO2 PE=2 SV=1)

HSP 1 Score: 77.0258 bits (188), Expect = 2.621e-13
Identity = 36/89 (40.45%), Postives = 54/89 (60.67%), Query Frame = 1
Query:  442 RVLVYLAAYLGGGSLSFYAVNSQIEGLKTNEILDSIYFCIVTMTTVGYGDLVPNSVVSKLLSCAFVFTGMGLVGLFLSKAADYLVDKQE 708
            + +  L  YL  G L ++         +T+ ++D++YFCIVTM T+GYGD+ P+SVV+KL S  FV  G G + + LS    Y++D QE
Sbjct:  148 QAVALLVVYLSLGVLIYWLNRDSYNVKQTHPVVDALYFCIVTMCTIGYGDITPDSVVTKLFSIFFVLVGFGFMDILLSGMVTYVLDLQE 236          
BLAST of DY305362 vs. ExPASy Swiss-Prot
Match: KCO4_ARATH (Putative outward-rectifying potassium channel 4 OS=Arabidopsis thaliana GN=KCO4 PE=3 SV=1)

HSP 1 Score: 68.5514 bits (166), Expect = 9.324e-11
Identity = 46/179 (25.70%), Postives = 88/179 (49.16%), Query Frame = 1
Query:  448 LVYLAAYLGGGSLSFYAVNSQIEGLKTNEILDSIYFCIVTMTTVGYGDLVPNSVVSKLLSCAFVFTGMGLVGLFLSKAADYLVDKQEILLVKALHRYQKVGPTDILKEIETHKVRYKCXXXXXXXXXXXXXGDIFRVVG*ENELC*SLPFVFVQPSPTLGYGEQKLLNY-GKG-VPFWV 978
            ++ L  YL  G  ++     Q  G +TN  +D+ YF IVT +TVGYGD+VP++  +K+L+   V TG+  +   L++   +++  QE  ++  +++ +     D + E    ++++K              G +F  V    +   S+ ++ V    T+GYG++      G+G   FW+
Sbjct:   39 MILLLVYLTFGVCTYSFFRDQFSGTETNLFVDAFYFSIVTFSTVGYGDIVPSTSTTKILTIVLVSTGVVFLDYLLNRVVSHVLSLQENAILDRINKTRNRAIRDHIAEDGKIRLKWKLCLAFCAVGLCVGSGALFLHVFERLDWLDSV-YLSVISVTTVGYGDKTFKTVEGRGFAVFWL 216          
The following BLAST results are available for this feature:
BLAST of DY305362 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 5
Match NameE-valueIdentityDescription
KCO1_ARATH6.605e-4946.72Calcium-activated outward-rectifying potassium cha... [more]
KCO6_ARATH1.257e-1535.25Probable calcium-activated outward-rectifying pota... [more]
KCO5_ARATH4.777e-1529.12Probable calcium-activated outward-rectifying pota... [more]
KCO2_ARATH2.621e-1340.45Probable calcium-activated outward-rectifying pota... [more]
KCO4_ARATH9.324e-1125.70Putative outward-rectifying potassium channel 4 OS... [more]
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Properties
Property NameValue
Genbank descriptionKN0AAH3CE02RM1 PhII-III-Vesicles1 Citrus clementina cDNA 5, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>DY305362 ID=DY305362; Name=DY305362; organism=Citrus clementina; type=EST; length=1272bp
TGCCGAATTCGGCACGAGGCAACACACTCACTTCATAAAGTTTCTTCCTT
GATCTGGGGGTGGTCTTGTGTCAGCTTGATAATGAACTCTAGAAGAATAT
AAACTGATTTTCCACTGGCAATTATGTTTATAATGTAAAGTTAACTCCCC
AGAAGTATTGTATATCATCTGATATCCTTGACAGTGACTGTGTTCATAAT
TCTAAAGGTCTGAGTCCGCTTTTGCTATCCTCTAATGGCCTCCAATGGTG
CAAATCAGCCGCTGCTCTCAGGATTTGTTGATTCAACGTCTCAAACAAAT
AATAAAGATGCTCCCAAGAGAAGAAGGCTTCGTCGGTGTAGAAGTGCTCC
CCAGACTGATGTTGCTGCTCTAGACATAAATGAAAAAGACTCAACTCACC
TTTCTGAGTCCCTTTTTGGCAAACCCCGCCCAAATTTTAAGAGGGTACTT
GTCTACCTGGCTGCCTACCTTGGTGGGGGGTCATTATCCTTCTATGCTGT
CAACAGTCAAATCGAAGGACTAAAAACCAATGAAATTCTAGATTCTATTT
ATTTCTGCATCGTGACAATGACCACTGTAGGGTATGGAGACCTTGTGCCT
AATAGTGTCGTTTCGAAACTACTTTCCTGTGCTTTTGTTTTCACAGGGAT
GGGTCTAGTTGGTCTGTTTCTGAGCAAAGCAGCCGACTATCTGGTCGACA
AGCAGGAAATATTGCTGGTTAAAGCCCTACACAGGTATCAAAAAGTTGGC
CCGACTGATATTCTAAAGGAGATTGAAACCCACAAAGTGAGATACAAATG
CATCATCATGTTGGTCCTTGAGTTGGTTCTCATTCTCGTTGGGGACATCT
TCCGGGTTGTGGGTTAAGAAAATGAGCTTTGTTAAAGCCTTCCATTTGTG
TTTGTTCAACCCTCACCCACCTTAGGCTATGGGGAACAAAAACTTCTCAA
CTACGGGAAGGGGGTGCCTTTTTGGGTGGAATTTGGAAACTTCAAATAAT
CAATATGAAACCTTAACCCATTTTCTTATTCTTAAACTTTGCCCAAAATT
TATTAAAGAAAAAAAAAAAAAAAAAAGGACCTCCCTTAAATTTGGGGTTT
TTTTAATCTCAAAAAAATCACCCCACCCATTTTATTTTTGAAAGGCAAAT
TCTCAATATTTGAGGAAAAAAAAAAGGGGGGTTGTTTCGATCGGTAGTCC
TTCCCCTAGTAATTTTCAAATCAAATTATAAAAATGATAACTCAATAAAG
AAAAAACAACATAGGGAGGGAC
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