DY305371

Overview
NameDY305371
Unique NameDY305371
TypeEST
OrganismCitrus clementina (Clementine)
Sequence length1257
Libraries
Library NameType
PhII-III-Vesicles1cdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
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BLAST of DY305371 vs. ExPASy Swiss-Prot
Match: ESCA_ARATH (Putative DNA-binding protein ESCAROLA OS=Arabidopsis thaliana GN=ESC PE=2 SV=1)

HSP 1 Score: 84.7297 bits (208), Expect = 1.232e-15
Identity = 62/169 (36.69%), Postives = 87/169 (51.48%), Query Frame = 2 
Query:  458 RPKRSPASDSQAL-KRSRGRPPGTGRKQQLATLGEWMNSSAGIAFAPHVISIGVGEDIVAXMLSFSQQRPRVVCILSGRGTVSSVTLRQPAT---------SVPTVTYEGRFKILCLSGSFLLAEKWHPPD*TGGVSASLFRSEGHVFGGG-IAVLIPASPFQVGVCSF 931
            RP   P + S A  KR RGRPPG+  K +   +   +   +  A   HV+ +  G DIV  + +++++R R V +L G GTVS+VTLRQP T             VT  GRF+IL L+G+ L       P   GG+S  L   +G V GG  +A LI ++P  +   SF
Sbjct:   72 RPDSDPNTSSSAPGKRPRGRPPGSKNKAKPPII---VTRDSPNALRSHVLEVSPGADIVESVSTYARRRGRGVSVLGGNGTVSNVTLRQPVTPGNGGGVSGGGGVVTLHGRFEILSLTGTVLPPP---APPGAGGLSIFLAGGQGQVVGGSVVAPLIASAPVILMAASF 234
The following BLAST results are available for this feature:
BLAST of DY305371 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 1
Match NameE-valueIdentityDescription
ESCA_ARATH1.232e-1536.69Putative DNA-binding protein ESCAROLA OS=Arabidops... [more]
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Properties
Property NameValue
Genbank descriptionKN0AAH3CF05RM1 PhII-III-Vesicles1 Citrus clementina cDNA 5, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>DY305371 ID=DY305371; Name=DY305371; organism=Citrus clementina; type=EST; length=1257bp
GGTGTTAGGGAGATCAGGATCTTGTGTGTATTTAGTTTAAGATTTTAGCT
TAAGTGGCTTAATAGACTCATTTTCTAGCTACCCAAAAAGAAAAAAAATT
CATTTTCTACTTAGTAAATGCATGGACGGAAGAGAAGCTATGGTTGCATC
AGGGGGTGTCTCTGGTCCCTATTACATTCAACAACATAGAGGAGCATTCA
GTGGTTCTCATTCAGCAACACAATCTGGTTTAATGCAAACCCCACCTGGG
TTTAGATCCTCGTCAAATCTTAACATTCCAACTCAACCAAATGTGGGATC
GACATTTGCAGTTGAGCCCAAACATGTCAATTTTGGCCATAACATGAGTG
TGCCATCCGGGGTGCCACTAAGTGATCCAGTGAAGAAGAAGAGAGGTAGA
CCCCGCAAATATGCCCCTGATGGGCAGGTTTCCTTGGGGCTTTCGCCATT
GCCAGCCAGGCCAAAGCGTTCTCCGGCATCTGATTCGCAGGCCTTGAAAC
GGAGTAGAGGGCGGCCTCCTGGGACAGGCAGGAAGCAGCAGTTGGCTACT
CTTGGTGAATGGATGAATAGTTCAGCTGGAATTGCTTTTGCACCGCATGT
GATCTCCATTGGAGTTGGAGAGGACATTGTGGCTAANATGTTGTCATTTT
CACAACAGAGGCCAAGGGTTGTGTGCATCTTGTCAGGCCGTGGTACAGTT
TCTTCAGTAACACTCCGTCAGCCTGCAACTTCAGTGCCCACCGTCACCTA
TGAGGGCCGTTTCAAGATATTATGCCTGTCTGGTTCATTCTTACTTGCTG
AAAAATGGCATCCTCCTGATTGAACTGGTGGTGTAAGTGCTTCCCTTTTC
AGGTCCGAAGGGCACGTATTCGGTGGGGGAATTGCTGTGCTTATCCCAGC
AAGCCCATTTCAGGTGGGGGTATGCAGTTTTGGTATATGGTGGTTCTAAA
AATAAAAAACAAGCAGTTTGCTGGCCCCGAAAAAGGACAAAAAATCCTCC
CCCCCCCCCCAGTAAAAAAATCCCCCTACCCAAATATTTCCCCCCCGCCC
CCCCAAAATTTTTTCCCCCCTCCCCCAATGAAAAGCCCGGGGCCCGGGTT
TTCCCAAAAGGCTTAAAGAGAAAAAAAACCCCCCCCCCACCAAAAATTTT
GGACCTTGGCTCCCGCGGGGGAAAAGAAAAGATTTTTGTCCCCCCCCCCA
AAAAAAAAACAAGGGTGGGGGGGTTTTTTTTTTTGATATATAAATTTGTT
GTGTGTG
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