DY305386

Overview
NameDY305386
Unique NameDY305386
TypeEST
OrganismCitrus clementina (Clementine)
Sequence length1235
Libraries
Library NameType
PhII-III-Vesicles1cdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of DY305386 vs. ExPASy Swiss-Prot
Match: SPG1_SCHPO (Septum-promoting GTP-binding protein 1 OS=Schizosaccharomyces pombe GN=spg1 PE=1 SV=1)

HSP 1 Score: 145.976 bits (367), Expect = 4.433e-34
Identity = 73/148 (49.32%), Postives = 99/148 (66.89%), Query Frame = 2
Query:  347 DTDSDLVSLKISLLGDCQIGKTSFVVKYV-GNEQERSLQMAGLNLINKTLMVQGARIAFSIWDVGGDSRSFDHVPIACKDAVAILFMFDLTSRCTLNSIVGWYSEARKWNQTAIPILIGTKFDDFVRLPPELPWTIATQARAYARA*K 787
            D   + V++K+ ++GD  IGKTS +V YV G+  E S Q  G+N + KT+ ++   I FSIWD+GG     + +P+ C DAVAILFMFDL+ + TLNSI  WY +AR +N+TA+PILIGTK+D F+  P E    I  QAR YA+A K
Sbjct:    3 DARKNNVTIKVGMIGDSSIGKTSLMVTYVQGSFDEESTQTLGVNFMEKTISIRNTEITFSIWDLGGQREFVNMLPMVCNDAVAILFMFDLSRKSTLNSIKEWYRQARGFNKTAVPILIGTKYDHFMTFPREDQEEITKQARRYAKAMK 150          
BLAST of DY305386 vs. ExPASy Swiss-Prot
Match: TEM1_YEAST (Protein TEM1 OS=Saccharomyces cerevisiae GN=TEM1 PE=1 SV=1)

HSP 1 Score: 107.842 bits (268), Expect = 2.025e-24
Identity = 57/144 (39.58%), Postives = 86/144 (59.72%), Query Frame = 2
Query:  365 VSLKISLLGDCQIGKTSFVVKYVGNEQERSL-QMAGLNLINKTLMVQGARIAFSIWDVGGDSRSFDHVPIACKDAVAILFMFDLTSRCTLNSIVGWYSEARKWNQTAIPILIGTKFDDFVRLPPELPWTIATQARAYARA*KQP 793
            V +++ L+GD Q+GKTS +VKYV N  ++   Q  G+N + + + ++   I FSI D+GG     + +PIA   +  I+F+FDLT   TL+SI  WY +A   N +AIPIL+GTK+D  + L PE    I+  +  YA+    P
Sbjct:   19 VEVQVGLVGDAQVGKTSLMVKYVQNIYDKEYTQTLGVNFLKRKVSIRSTDIIFSIMDLGGQREFINMLPIATVGSSVIIFLFDLTRPETLSSIKEWYRQAYGLNDSAIPILVGTKYDLLIDLDPEYQEQISRTSMKYAQVMNAP 162          

HSP 2 Score: 26.9498 bits (58), Expect = 2.025e-24
Identity = 13/29 (44.83%), Postives = 15/29 (51.72%), Query Frame = 1
Query:  781 MKTTLFFSSATPNINGHKIFKFIRANLFN 867
            M   L F S   +IN  KIFK   A +FN
Sbjct:  159 MNAPLIFCSTAKSINIQKIFKIALAKIFN 187          
BLAST of DY305386 vs. ExPASy Swiss-Prot
Match: RAB26_DROME (Ras-related protein Rab-26 OS=Drosophila melanogaster GN=Rab26 PE=1 SV=2)

HSP 1 Score: 78.1814 bits (191), Expect = 1.135e-13
Identity = 46/121 (38.02%), Postives = 66/121 (54.55%), Query Frame = 2
Query:  359 DLVSLKISLLGDCQIGKTSFVVKYVGNEQERSLQMA--GLNLINKTLMVQGARIAFSIWDVGGDSRSFDHVPIACKDAVAILFMFDLTSRCTLNSIVGWYSEARKWNQ-TAIPILIGTKFD 712
            D V+ K  LLGD  +GKTSF+VKY   E       A  G+ L NK ++V G R+   IWD  G  R         +DA A+L ++D+T++ T ++I  W  E R++ Q   + +LIG K D
Sbjct:  187 DTVNHKTILLGDSGVGKTSFLVKYNTGEFRLGSFSATVGIALTNKVVVVDGTRVKLQIWDTAGQERFRSVTHAYYRDAHALLLLYDVTNKTTYDNIRAWLGEIREYAQEDVVIVLIGNKAD 307          
BLAST of DY305386 vs. ExPASy Swiss-Prot
Match: RAB37_MOUSE (Ras-related protein Rab-37 OS=Mus musculus GN=Rab37 PE=1 SV=2)

HSP 1 Score: 70.0922 bits (170), Expect = 3.091e-11
Identity = 42/135 (31.11%), Postives = 68/135 (50.37%), Query Frame = 2
Query:  317 ELSRTFSSGYDTDSDLVSLKISLLGDCQIGKTSFVVKYVGNE--QERSLQMAGLNLINKTLMVQGARIAFSIWDVGGDSRSFDHVPIACKDAVAILFMFDLTSRCTLNSIVGWYSEARKWNQTAIPI-LIGTKFD 712
            E S  FS  YD        K+ LLGD  +GKT F++++          +   G++  NK + V GAR+   IWD  G  R         +DA A+L ++D+T++ + ++I  W +E  ++ Q  + I L+G K D
Sbjct:   17 ERSPPFSPNYDLTG-----KVMLLGDSGVGKTCFLIQFKDGAFLSGTFIATVGIDSRNKVVTVDGARVKLQIWDTAGQERFRSVTHAYYRDAQALLLLYDITNQSSFDNIRAWLTEIHEYAQRDVVIMLLGNKAD 146          
The following BLAST results are available for this feature:
BLAST of DY305386 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 4
Match NameE-valueIdentityDescription
SPG1_SCHPO4.433e-3449.32Septum-promoting GTP-binding protein 1 OS=Schizosa... [more]
TEM1_YEAST2.025e-2439.58Protein TEM1 OS=Saccharomyces cerevisiae GN=TEM1 P... [more]
RAB26_DROME1.135e-1338.02Ras-related protein Rab-26 OS=Drosophila melanogas... [more]
RAB37_MOUSE3.091e-1131.11Ras-related protein Rab-37 OS=Mus musculus GN=Rab3... [more]
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Properties
Property NameValue
Genbank descriptionKN0AAH3CH07RM1 PhII-III-Vesicles1 Citrus clementina cDNA 5, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>DY305386 ID=DY305386; Name=DY305386; organism=Citrus clementina; type=EST; length=1235bp
TGCCGAATTCGGCACGAGGAAAATTTTTTAAAGAAACTATGATGCTGCTG
CCGCTGCAACAGCAACAATAATGGCCAAAATAATCCATGAAGCTACTGAA
AACATGACTCAGCTTTGCAGAAGAGTTGTTCATGTGAATATTAGACGGAG
TTTGTTTGATAGAGTGTCGATTTTCCGGAGGTTCTTTCGGTTTATTTGGG
ATAGGATTCTTGTTTGTTCGATTGGGAAGCAGCCGGCAGTTAGGTACCAG
AAGTTGACCCGCCGGTCGTCGTCGGAGTCTTCTCCGGCGCCGGATACTAT
GGAGGCCGGCCTTGTGGAGCTTTCCAGGACGTTTAGTAGTGGGTATGATA
CGGATTCGGACTTGGTTTCTTTGAAGATCAGTTTGTTGGGTGATTGCCAA
ATTGGCAAAACAAGCTTCGTGGTCAAGTATGTGGGAAATGAGCAAGAAAG
AAGCTTGCAAATGGCAGGATTGAATCTGATAAATAAAACTTTGATGGTTC
AAGGTGCCAGAATTGCTTTTAGCATCTGGGATGTTGGAGGAGATAGCAGG
TCATTTGATCATGTTCCAATTGCTTGTAAAGATGCAGTAGCAATTTTATT
CATGTTTGATCTTACTAGCAGATGCACCCTTAACAGTATTGTTGGGTGGT
ACAGTGAAGCCAGAAAGTGGAACCAGACAGCGATTCCCATATTGATAGGG
ACCAAATTTGATGATTTTGTGAGACTCCCACCAGAATTGCCATGGACTAT
TGCAACTCAGGCGAGGGCATATGCAAGGGCATGAAAACAACCCTTTTCTT
CTCAAGTGCTACCCCAAACATAAATGGTCACAAAATTTTCAAGTTCATCA
GGGCCAACCTTTTTAATTTCCCCTGGAACGGTAAAAAAAAAACTTGAACT
AAAGGAAAAGCCGAATAATCCACCTTCCGAAAAATTCCCTTTCCAATGAA
GAATTTTTCCTTCTTTTCCTTGGTACATACCCCAAAAAAAAAAAAAAAAG
AAAAAAGGGAAAAAAAAAACCACCAAATTCAAAAATTTTTCCCAAAAAAA
AATATCTTCCTAACCCCCCCCCCTTAGGGTCCCTTTTTTTTTAAAAAATT
CTTTCCCTTTGTGTTTCCCCTGGGGGAAACCCAAAAACGCCGAAATTGGG
GGGGGCATGAAAGAGGCCCCACGAAAGGAGAATTAAAAATAAAATGAATT
TTTTCGCTTTGTATATTTTCTCTCCCTTGCTTCCA
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