DY305407

Overview
NameDY305407
Unique NameDY305407
TypeEST
OrganismCitrus clementina (Clementine)
Sequence length1274
Libraries
Library NameType
PhII-III-Vesicles1cdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Alignments
Feature NameTypeLocationAnalysis
DY305407_ssr290 microsatellite DY305407_ssr290:290..301. BLAST: Citrus ESTs to Prunus persica proteins V1
DY305407_ssr1106 microsatellite DY305407_ssr1106:1106..1117. BLAST: Citrus ESTs to Prunus persica proteins V1
Homology
BLAST of DY305407 vs. ExPASy Swiss-Prot
Match: FBK15_ARATH (F-box/kelch-repeat protein At1g26930 OS=Arabidopsis thaliana GN=At1g26930 PE=2 SV=1)

HSP 1 Score: 189.504 bits (480), Expect = 3.624e-47
Identity = 92/196 (46.94%), Postives = 125/196 (63.78%), Query Frame = 2
Query:  368 SDSLLPGLVDDVALNCLAFACTSDYASLLFINKRFHKLIKSGYLYGLRKQLGIVEHWVYLVCDPRGWEAFDPMKKKWMALPKIPCDECFNHADKESLAVGSELLVFGRELFDFAIWKYSLVFRSWMKCEGMNHPRCLFGSGSLGSIGVIAGGNDKNGHVLKSAELFDSPPGRWEMVTPLAFPPENWVLGFFRNGKF 955
            S +L+PG+  D +L+CL     +DY S+  +N+    LI+SG +Y LR+  G +EHWVY  C    WEAFDP  K+WM LP +P +ECF +ADKESLAVG++LLVFG E+  + I++YSL+  SW   + MN PRCLFGS S G I V+AGG D +G +L +AEL++     W +V P          G F +GKF
Sbjct:   68 SGTLIPGMNRDDSLSCLIRCSRADYCSIASVNRSLRSLIRSGEIYRLRRLQGTLEHWVYFSCHLNEWEAFDPRSKRWMHLPSMPQNECFRYADKESLAVGTDLLVFGWEVSSYVIYRYSLLTNSWSTAKSMNMPRCLFGSASYGEIAVLAGGCDSSGRILDTAELYNYEDQTW-LVLPGMNKRRKMCSGVFMDGKF 262          
BLAST of DY305407 vs. ExPASy Swiss-Prot
Match: FBK29_ARATH (F-box/kelch-repeat protein At1g74510 OS=Arabidopsis thaliana GN=At1g74510 PE=2 SV=1)

HSP 1 Score: 178.718 bits (452), Expect = 6.397e-44
Identity = 91/197 (46.19%), Postives = 119/197 (60.41%), Query Frame = 2
Query:  389 LVDDVALNCLAFACTSDYASLLFINKRFHKLIKSGYLYGLRKQLGIVEHWVYLVCDPRGWEAFDPMKKKWMALPKIPCDECFNHADKESLAVGSELLVFGRELFDFAIWKYSLVFRSWMKCEGMNHPRCLFGSGSLGSIGVIAGGNDKNGHVLKSAELFDSPPGRWEMVTPLAFPPENWVLGFFRNGKF--LGNWGE 973
            L  +  LNCLA    SD+ S+   N+ F  LIK   LY LR+  GIVEHW+Y  C    WEA+DP   +W+ +PK+  +ECF  +DKESLAVG+ELLVFG+E+    I++YS++  +W     MN PRCLFGS SLG I VIAGG D  G +L SAEL++S  G W ++ P            F +G F  +G  GE
Sbjct:   99 LDQNALLNCLAHCSLSDFGSIASTNRTFRSLIKDSELYRLRRAKGIVEHWIYFSCRLLEWEAYDPNGDRWLRVPKMTFNECFMCSDKESLAVGTELLVFGKEIMSHVIYRYSILTNTWTSGMQMNVPRCLFGSASLGEIAVIAGGCDPRGRILSSAELYNSETGEWTVI-PSMNKARKMCSSVFMDGNFYCIGGIGE 294          
BLAST of DY305407 vs. ExPASy Swiss-Prot
Match: SKI11_ARATH (F-box/kelch-repeat protein SKIP11 OS=Arabidopsis thaliana GN=SKIP11 PE=1 SV=2)

HSP 1 Score: 172.94 bits (437), Expect = 3.510e-42
Identity = 91/206 (44.17%), Postives = 121/206 (58.74%), Query Frame = 2
Query:  341 NDGCCRIGPSDSLLPGLVDDVALNCLAFACTSDYASLLFINKRFHKLIKSGYLYGLRKQLGIVEHWVYLVCDPRGWEAFDPMKKKWMALPKIPCDECFNHADKESLAVGSELLVFGRELF-DFAIWKYSLVFRSWMKCEGMNHPRCLFGSGSLGSIGVIAGGNDKNGHVLKSAELFDSPPGRWEMVTPLAFPPENWVLGFFRNGKF 955
            ND       S SL+  +  D +++CL     SDY S+  +N+ F  L+KSG +Y LR+Q G VEHWVY  C    W AFDP++++WM LP +P    F  ADKESLAVG++LLV G++ F    I++YSL+  SW     MN PRCLFGS SLG I + AGG D  G +L  AE+++S    W +  P    P     G F +GKF
Sbjct:  105 NDNGGDSSDSHSLINEIGRDNSIDCLIRCSRSDYGSIASLNRNFRSLVKSGEIYRLRRQNGFVEHWVYFSCQLLEWVAFDPVERRWMQLPTMPSSVTFMCADKESLAVGTDLLVLGKDDFSSHVIYRYSLLTNSWSSGMKMNSPRCLFGSASLGEIAIFAGGCDSQGKILDFAEMYNSELQTW-ITLPRMNKPRKMCSGVFMDGKF 309          
BLAST of DY305407 vs. ExPASy Swiss-Prot
Match: FBK70_ARATH (F-box/kelch-repeat protein At3g27150 OS=Arabidopsis thaliana GN=At3g27150 PE=2 SV=1)

HSP 1 Score: 108.997 bits (271), Expect = 6.225e-23
Identity = 65/197 (32.99%), Postives = 101/197 (51.27%), Query Frame = 2
Query:  380 LPGLVDDVALNCLAFACTSDYASLLFINKRFHKLIKSGYLYGLRKQLGIVEHWVYLVCD-PRGWEAFDPMKKKWMALPKIPCDECFNHADKESLAVGSELLVFGRELFDFAIWKYSLVFRSWMKCEGMNHPRCLFGSGSLGSIGVIAGGNDKNGH----VLKSAELFDSPPGRWEMVTPLAFPPENWVLGFFRNGKF 955
            +P LV ++ +  LA     +Y  L  +NK F +L+KS  ++ +R++ G+VE  V+++      W  FD        LP++P D CF H DKESL  G+ L+V G+E    A+W+Y L    W K   M  PR LF S + G++  +AGG    G+    V+ S E +DS    W ++  +      +  G +  GKF
Sbjct:   71 VPQLVYELEVEILARVPRFEYWKLKLLNKGFSRLLKSDEIFKVRRERGVVEPSVFMLSSGDTCWTMFDKGFGNCQKLPELPSDICFLHGDKESLCAGTHLIVTGKEEKSIALWRYELETSKWFKGPAMITPRILFASATCGTVVFVAGGLKIEGNGTMEVVDSVEKYDSKTKTWTLLRGM-HKRRKFCSGCYLRGKF 266          
BLAST of DY305407 vs. ExPASy Swiss-Prot
Match: FBK22_ARATH (F-box/kelch-repeat protein At1g55270 OS=Arabidopsis thaliana GN=At1g55270 PE=2 SV=1)

HSP 1 Score: 83.1889 bits (204), Expect = 3.658e-15
Identity = 57/194 (29.38%), Postives = 89/194 (45.88%), Query Frame = 2
Query:  377 LLPGLVDDVALNCLAFACTSDYASLLFINKRFHKLIKSGYLYGLRKQLGIVEHWVYLVCDPR----GWEAFDPMKKKWMALPKIPCDECFNHADKESLAV--GSELLVFG----------RELFDFAIWKYSLVFRSWMKCEGMNHPRCLFGSGSLGSIGVIAGGNDKN-GHVLKSAELFDSPPGRWEMVTPLA 907
            LLPGL DD+A+ CL     +++  L  + KR+++L    + Y  RK LG+ E WVY+    R     W  FDP+ + W  LP +P +  ++ A     AV  G  L +FG          R +F      Y+     W +   M   R  FG   + +   +AGG  +     L+SAE++D    RW  +  ++
Sbjct:   78 LLPGLPDDLAVACLIRVPRAEHRKLRLVCKRWYRLASGNFFYSQRKLLGMSEEWVYVFKRDRDGKISWNTFDPISQLWQPLPPVPRE--YSEAVGFGCAVLSGCHLYLFGGKDPLRGSMRRVIF------YNARTNKWHRAPDMLRKRHFFGCCVINNCLYVAGGECEGIQRTLRSAEVYDPNKNRWSFIADMS 263          
BLAST of DY305407 vs. ExPASy Swiss-Prot
Match: FBK28_ARATH (F-box/kelch-repeat protein At1g67480 OS=Arabidopsis thaliana GN=At1g67480 PE=2 SV=1)

HSP 1 Score: 74.7146 bits (182), Expect = 1.301e-12
Identity = 47/190 (24.74%), Postives = 85/190 (44.74%), Query Frame = 2
Query:  371 DSLLPGLVDDVALNCLAFACTSDYASLLFINKRFHKLIKSGYLYGLRKQLGIVEHWVYLVCDPRG-----WEAFDPMKKKWMALPKIPCDECFNH----ADKESLAVGSELLVFGRELFDFAIWKYSLVFRSWMKCEGMNHPRCLFGSGSLGSIGVIAGGNDKNGHVLKSAELFDSPPGRWEMVTPLAFP 913
            D L+PGL DDVA  CLA    + + S+  + K++  +++S     +R+  G++E W+Y++    G     WE  D + +K  +LP +P            D + L +    ++ G  +    +++Y     SW +   +   R  F    +     + GG+  +G  L SAE++D     W  +  L  P
Sbjct:   37 DPLIPGLPDDVAKQCLALVPRARFPSMGSVCKKWRFVVQSKEFITVRRLAGMLEEWLYVLTMNAGGKDNRWEVMDCLGQKLSSLPPMPGPAKTGFKVVVVDGKLLVIAGCCMINGSLVASADVYQYDTCLNSWSRLADLEVARYDFACAEVNGHVYVVGGHGVDGESLSSAEVYDPETCTWTFIESLRRP 226          
BLAST of DY305407 vs. ExPASy Swiss-Prot
Match: FBK17_ARATH (F-box/kelch-repeat protein At1g30090 OS=Arabidopsis thaliana GN=At1g30090 PE=2 SV=1)

HSP 1 Score: 73.559 bits (179), Expect = 2.898e-12
Identity = 61/224 (27.23%), Postives = 92/224 (41.07%), Query Frame = 2
Query:  371 DSLLPGLVDDVALNCLAFACTSDYASLLFINKRFHKLI-KSGYLYGLRKQLGIVEHWVYLVCDPR-----GWEAFDPMKKKWMALPKIPCDE--CFNHADKESLAVGSELLVFGRELFDF-----AIWKYSLVFRSWMKCEGMNHPRCLFGSGSLGSIGVIAGGNDKNGHVLKSAELFDSPPGRWEMVTPLAFPPENWVLGFFRNGKFLGN----WGEMASPPG 991
            + L+PGL DDVALNCL       + S   + KR+H L       +  RK+ G  + W+++V   R      W+  D     W  +P +PC +  C +     S+     + V G  + D       + KY +V   W     M   R  F SG +  +   AGGN  + + L  AE+ +   G W  V+ +     ++      NGK L      W    SP G
Sbjct:   51 EPLIPGLPDDVALNCLLRVPVQSHVSSKSVCKRWHLLFGTKETFFAKRKEFGFKDPWLFVVGFSRCTGKIQWKVLDLRNLTWHEIPAMPCRDKVCPHGFRSVSMPREGTMFVCGGMVSDSDCPLDLVLKYDMVKNHWTVTNKMITARSFFASGVIDGMIYAAGGNAADLYELDCAEVLNPLDGNWRPVSNMVAHMASYDTAVL-NGKLLVTEGWLWPFFVSPRG 273          
The following BLAST results are available for this feature:
BLAST of DY305407 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 7
Match NameE-valueIdentityDescription
FBK15_ARATH3.624e-4746.94F-box/kelch-repeat protein At1g26930 OS=Arabidopsi... [more]
FBK29_ARATH6.397e-4446.19F-box/kelch-repeat protein At1g74510 OS=Arabidopsi... [more]
SKI11_ARATH3.510e-4244.17F-box/kelch-repeat protein SKIP11 OS=Arabidopsis t... [more]
FBK70_ARATH6.225e-2332.99F-box/kelch-repeat protein At3g27150 OS=Arabidopsi... [more]
FBK22_ARATH3.658e-1529.38F-box/kelch-repeat protein At1g55270 OS=Arabidopsi... [more]
FBK28_ARATH1.301e-1224.74F-box/kelch-repeat protein At1g67480 OS=Arabidopsi... [more]
FBK17_ARATH2.898e-1227.23F-box/kelch-repeat protein At1g30090 OS=Arabidopsi... [more]
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Properties
Property NameValue
Genbank descriptionKN0AAH3DC08RM1 PhII-III-Vesicles1 Citrus clementina cDNA 5, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>DY305407 ID=DY305407; Name=DY305407; organism=Citrus clementina; type=EST; length=1274bp
GGAGAGATGGTTATAAATGAGTCATGTGCTAAGTTTTATGGAAAGAATAT
ATAGGCGGAGGTTCATTGTGTGCAAAGATCGGAATTTGTTTTCTGGTTAT
TGGGAGCGTCATTGAGAATTGTGGGTTGACACTTTCTTTTATCTTTTTAA
ATTTTAATCAAGATTGACTTTTTTTTTTTTATAGAAATTTTGCTTGATTT
TGTTGGATTATAGGAAAAGAATTTTTTTTCTCCCTTTTAACATGATAAAG
AAAGCGCGTTTGGATGATATTATGGAGGAAGTAGAAAAGGAAGAAGAAGA
AGCAGCTAGTTTATCAGTAGTGAGTTGGAAAGCGGGAGTGAATGATGGTT
GTTGTCGGATTGGACCAAGTGATTCACTTCTCCCTGGTCTTGTTGATGAT
GTTGCTTTGAACTGTCTTGCTTTTGCATGTACATCCGACTATGCATCATT
GTTATTTATAAATAAGAGGTTTCATAAGTTAATCAAGAGTGGGTATTTGT
ATGGGTTAAGGAAGCAATTGGGTATTGTGGAGCATTGGGTCTACTTGGTT
TGTGATCCACGGGGTTGGGAGGCATTCGATCCAATGAAAAAGAAGTGGAT
GGCTTTGCCTAAGATCCCTTGTGATGAGTGTTTCAACCATGCAGATAAAG
AGTCCTTGGCTGTGGGTAGTGAATTGTTGGTTTTTGGGCGTGAATTGTTT
GATTTTGCAATTTGGAAGTATAGCTTGGTTTTCCGTAGTTGGATGAAGTG
TGAGGGAATGAACCACCCTCGTTGCTTGTTTGGCTCAGGGAGTCTTGGTT
CTATTGGTGTTATTGCAGGGGGCAATGATAAAAACGGCCATGTTTTAAAA
TCTGCTGAATTATTTGACTCCCCACCAGGCAGATGGGAAATGGTTACCCC
CCTTGCTTTCCCCCCCGAAAATTGGGTTCTGGGTTTTTTCAGGAATGGAA
AATTTCTTGGGAATTGGGGGGAAATGGCAAGCCCCCCTGGTTTCCTTGAC
CCTGGGGGGGGAGGAATTTTGATCCTTTAAAACCCAGAAAAAAGGGAGGA
AAAAAAAAAGGGGAAATTACCCCCAAAATGTCAATAAGGGGGTTGCCCCC
GGGCCCCCTCCCTCCCTCCTTTTCGCTTTTTGGTGAAAAAAACTACTTTT
TATTATCCCTTTTTGAAATATTTTTTGACAAATAAATCAGGGGGTTCCAA
AAAAAAAATTAATAAAACAAAAGTGTTGTAATATAAAAAAAAACACCGGT
GGGGGGAGAAATGGGTTTGGTTGT
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