DY306207

Overview
NameDY306207
Unique NameDY306207
TypeEST
OrganismCitrus clementina (Clementine)
Sequence length1022
Libraries
Library NameType
CitNFLcdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Alignments
Feature NameTypeLocationAnalysis
Ccv1_Contig10836 contig Ccv1_Contig10836:321..1342. BLAST: Citrus Unigene V1 Contigs to Prunus persica proteins V1
Homology
BLAST of DY306207 vs. ExPASy Swiss-Prot
Match: SKI11_ARATH (F-box/kelch-repeat protein SKIP11 OS=Arabidopsis thaliana GN=SKIP11 PE=1 SV=2)

HSP 1 Score: 131.724 bits (330), Expect = 6.605e-30
Identity = 90/188 (47.87%), Postives = 110/188 (58.51%), Query Frame = 3
Query:  438 MLEGRC---LLTSREITSLCHPESKWS--YMTCMIDL----NGKRPLEIDGDDDCHHQRNKSLKL---------SNSRKTAGTSREQSDDDQGSDDNLQSEDNHQADDHQQSNAGHSSDLDSLIQPIGRDNSISCLIRCSRSDYGSIASLNQSFRSLIRSGELYRLRRLNGVIEHWV*FSWPLLEXKA 947
            MLE R     L++R  +S    ES WS  YM    D     NGKR LE+ G+     ++ KSLKL          +S  +     EQ+D   G   + + E   Q+D +   N G SSD  SLI  IGRDNSI CLIRCSRSDYGSIASLN++FRSL++SGE+YRLRR NG +EHWV FS  LLE  A
Sbjct:    1 MLEDRSPDSCLSTRVFSSSRLSESNWSNSYMYPEDDDKLLGNGKRALEVVGEV----RQTKSLKLMGFSIIYDSDSSDYSLSGGEEQADAAIGDGSSSRQEQEQQSDFND--NGGDSSDSHSLINEIGRDNSIDCLIRCSRSDYGSIASLNRNFRSLVKSGEIYRLRRQNGFVEHWVYFSCQLLEWVA 182          
BLAST of DY306207 vs. ExPASy Swiss-Prot
Match: FBK15_ARATH (F-box/kelch-repeat protein At1g26930 OS=Arabidopsis thaliana GN=At1g26930 PE=2 SV=1)

HSP 1 Score: 108.612 bits (270), Expect = 1.421e-26
Identity = 71/173 (41.04%), Postives = 93/173 (53.76%), Query Frame = 3
Query:  438 MLEGR---CLLTSREITSLCHPESKWSYMTCMIDLNGKRPLEIDGDDDCHHQRNKSLKLSNSRKTAGTSREQSDDDQGSDDNLQSEDNHQADDHQQSNAGHSSDLDSLIQPIGRDNSISCLIRCSRSDYGSIASLNQSFRSLIRSGELYRLRRLNGVIEHWV*FSWPLLEXKA 947
            M EGR     L S   T   H E+KWS++     ++GKR    + + D H ++   L                     + D+ + EDN           G SSD  +LI  + RD+S+SCLIRCSR+DY SIAS+N+S RSLIRSGE+YRLRRL G +EHWV FS  L E +A
Sbjct:    1 MFEGRPRDSCLVSTLFTMPSHKETKWSFL-----VSGKRSFLNNDESDLHFKKMYKL---------------------TTDSSEGEDN-----------GSSSDSGTLIPGMNRDDSLSCLIRCSRADYCSIASVNRSLRSLIRSGEIYRLRRLQGTLEHWVYFSCHLNEWEA 136          

HSP 2 Score: 30.4166 bits (67), Expect = 1.421e-26
Identity = 12/20 (60.00%), Postives = 13/20 (65.00%), Query Frame = 2
Query:  947 FGPIRRRGMHLPKMTSNECF 1006
            F P  +R MHLP M  NECF
Sbjct:  137 FDPRSKRWMHLPSMPQNECF 156          
BLAST of DY306207 vs. ExPASy Swiss-Prot
Match: FBK29_ARATH (F-box/kelch-repeat protein At1g74510 OS=Arabidopsis thaliana GN=At1g74510 PE=2 SV=1)

HSP 1 Score: 104.375 bits (259), Expect = 2.761e-24
Identity = 65/171 (38.01%), Postives = 95/171 (55.56%), Query Frame = 3
Query:  438 MLEGRCLLTSREITSLCHPESKWSYMT-CMIDLNGKRPLEIDGDDDCHHQRNKSLKLSNSRKTAGTSREQSDDDQGSDDNLQSEDNHQADDHQQSNAGHSSDLDSLIQPIGRDNSISCLIRCSRSDYGSIASLNQSFRSLIRSGELYRLRRLNGVIEHWV*FSWPLLEXKA 947
            MLE    L SR++ S C  ESKW Y   C++ L+ ++ L +D  D       K L++ +       SR +SD      D+LQ    +Q+ +  Q   G      S +  + ++  ++CL  CS SD+GSIAS N++FRSLI+  ELYRLRR  G++EHW+ FS  LLE +A
Sbjct:    1 MLEAPSYLVSRDLPSSCEEESKWIYNAHCVLQLSLRKRL-LDDTDVEGSSAKKMLRVDHG------SRGESDK---ITDSLQLAKTYQSSNQSQQGGGGDQQ-SSPVTRLDQNALLNCLAHCSLSDFGSIASTNRTFRSLIKDSELYRLRRAKGIVEHWIYFSCRLLEWEA 160          

HSP 2 Score: 26.9498 bits (58), Expect = 2.761e-24
Identity = 12/25 (48.00%), Postives = 15/25 (60.00%), Query Frame = 2
Query:  947 FGPIRRRGMHLPKMTSNECFCGSKK 1021
            + P   R + +PKMT NECF  S K
Sbjct:  161 YDPNGDRWLRVPKMTFNECFMCSDK 185          
The following BLAST results are available for this feature:
BLAST of DY306207 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 3
Match NameE-valueIdentityDescription
SKI11_ARATH6.605e-3047.87F-box/kelch-repeat protein SKIP11 OS=Arabidopsis t... [more]
FBK15_ARATH1.421e-2641.04F-box/kelch-repeat protein At1g26930 OS=Arabidopsi... [more]
FBK29_ARATH2.761e-2438.01F-box/kelch-repeat protein At1g74510 OS=Arabidopsi... [more]
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Properties
Property NameValue
Genbank descriptionIC0AAA96CD05RM1 CitNFL Citrus clementina cDNA 5, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>DY306207 ID=DY306207; Name=DY306207; organism=Citrus clementina; type=EST; length=1022bp
TGCTTGCGGAATTTTTATTTCTTATGTTCTTCTAATTTGAGTACAAAGAT
CTGGAGTTTATATTTTTTCAATTAAATTTGCCAGTTTTATAGTTAATTGT
CATTAGCTAATTCGGAAATTTGAGCTTTGCTTTGGAAGATTTGTTTTTGG
CGTTCAATCTGGATCGTTGGTTTACTGGAATTCAGATCAGTTAACATTTG
AGATAAAGCTCAAAGCTTAGCCTGTTTTTATTCTTTTCCATTTGCGTTTA
TGGATTTTATATCAGTGATAAACAATTGAAACAGAAAAAATTTCGTTTAA
TTTTCTTTGACTAGGGTGATTCTTCATTGTCTCAACTGCAATTTTCGGGG
ACTCGACTTTACTGAGCGGCAACACTGGAGCTGAGGTGAGTTGTGTTGTT
GCTGTTGTTATTTTGCTTTGGTGGTAATTGAAAAGATATGTTGGAAGGTC
GATGCTTGCTGACATCAAGGGAAATAACTAGCTTGTGCCATCCAGAATCC
AAGTGGTCTTACATGACCTGTATGATAGACCTAAATGGCAAGCGACCATT
AGAAATTGATGGCGATGATGATTGTCATCACCAACGTAACAAATCCTTAA
AGCTATCCAATTCTCGTAAAACAGCAGGAACTTCGCGGGAGCAATCTGAT
GATGATCAGGGATCTGATGATAACTTACAGTCTGAAGATAATCACCAGGC
TGATGATCATCAGCAATCAAATGCCGGGCATTCTTCGGATTTGGACTCAC
TTATTCAACCTATTGGTCGGGACAACTCCATTAGTTGTCTTATTCGTTGC
TCGAGGTCTGACTATGGTTCTATTGCGTCTCTGAATCAGAGTTTTCGGTC
CTTGATTAGGAGTGGAGAGTTGTATAGGCTGAGGCGGCTGAATGGTGTGA
TTGAGCATTGGGTTTAATTTTCTTGGCCCTTGCTTGAGTGNAAGGCTTTG
GTCCTATTCGTCGCCGGGGGATGCATTTGCCTAAGATGACTTCCAACGAG
TGCTTTTGTGGTTCTAAAAAGA
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