DY306209

Overview
NameDY306209
Unique NameDY306209
TypeEST
OrganismCitrus clementina (Clementine)
Sequence length1083
Libraries
Library NameType
CitNFLcdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Alignments
Feature NameTypeLocationAnalysis
DY306209_ssr242 microsatellite DY306209_ssr242:242..262. BLAST: Citrus ESTs to Prunus persica proteins V1
Ccv1_Contig12376 contig Ccv1_Contig12376:48..1130. BLAST: Citrus Unigene V1 Contigs to Prunus persica proteins V1
Homology
BLAST of DY306209 vs. ExPASy Swiss-Prot
Match: TTC1_HUMAN (Tetratricopeptide repeat protein 1 OS=Homo sapiens GN=TTC1 PE=1 SV=1)

HSP 1 Score: 127.102 bits (318), Expect = 1.774e-28
Identity = 77/207 (37.20%), Postives = 111/207 (53.62%), Query Frame = 3
Query:  303 DELSQKALNEANEAKLEGNKLFGEGKYEEALLQYEVALRXXXXXXXXXXXXXXXXKEGQSASEKKEVAPAPEMAELRSICHSNRGICFLKLGKFEESIKECTKALELNPTYMKALIRRAEAHEKLEHFEEAIADMKKILEFDPSNNQAKRTILRLEPLAXXXXXXXXXXXIGKLKEMGNSILGRFGMSTDNFKAVKDLNTGAYXISF 923
            DE  QK   E+   K EGN+ F +G Y EA   Y  AL                           E+ P+    E RSI  SNR    +K  K E +I +C+KA++LNP+Y++A++RRAE +EK +  +EA+ D K ILE DPS +QA+   +RL               +GKLK++GN +L  FG+ST+NF+  +D +TG+Y I+F
Sbjct:  106 DEEKQKRREESTRLKEEGNEQFKKGDYIEAESSYSRAL---------------------------EMCPSCFQKE-RSILFSNRAAARMKQDKKEMAINDCSKAIQLNPSYIRAILRRAELYEKTDKLDEALEDYKSILEKDPSIHQAREACMRLPKQIEERNERLKEEMLGKLKDLGNLVLRPFGLSTENFQIKQDSSTGSYSINF 284          
BLAST of DY306209 vs. ExPASy Swiss-Prot
Match: TTC1_MOUSE (Tetratricopeptide repeat protein 1 OS=Mus musculus GN=Ttc1 PE=2 SV=1)

HSP 1 Score: 125.176 bits (313), Expect = 6.739e-28
Identity = 74/207 (35.75%), Postives = 111/207 (53.62%), Query Frame = 3
Query:  303 DELSQKALNEANEAKLEGNKLFGEGKYEEALLQYEVALRXXXXXXXXXXXXXXXXKEGQSASEKKEVAPAPEMAELRSICHSNRGICFLKLGKFEESIKECTKALELNPTYMKALIRRAEAHEKLEHFEEAIADMKKILEFDPSNNQAKRTILRLEPLAXXXXXXXXXXXIGKLKEMGNSILGRFGMSTDNFKAVKDLNTGAYXISF 923
            +E  QK   E+ + K EGN+ F  G Y EA   Y  AL                           ++ PA    + RS+  SNR    +K  K E +I +C+KA++LNPTY++A++RRAE +EK +  +EA+ D K +LE DPS +QA+   +RL               +GKLK++GN +L  FG+ST+NF+  +D +TG+Y I+F
Sbjct:  106 EEEKQKRREESAKLKEEGNERFKRGDYMEAESSYSQAL---------------------------QMCPACFQKD-RSVLFSNRAAARMKQDKKETAITDCSKAIQLNPTYIRAILRRAELYEKTDKLDEALEDYKSVLEKDPSVHQAREACMRLPKQIEERNERLKEEMLGKLKDLGNLVLRPFGLSTENFQIKQDSSTGSYSINF 284          
BLAST of DY306209 vs. ExPASy Swiss-Prot
Match: TTC1_BOVIN (Tetratricopeptide repeat protein 1 OS=Bos taurus GN=TTC1 PE=2 SV=1)

HSP 1 Score: 121.324 bits (303), Expect = 9.732e-27
Identity = 73/207 (35.27%), Postives = 111/207 (53.62%), Query Frame = 3
Query:  303 DELSQKALNEANEAKLEGNKLFGEGKYEEALLQYEVALRXXXXXXXXXXXXXXXXKEGQSASEKKEVAPAPEMAELRSICHSNRGICFLKLGKFEESIKECTKALELNPTYMKALIRRAEAHEKLEHFEEAIADMKKILEFDPSNNQAKRTILRLEPLAXXXXXXXXXXXIGKLKEMGNSILGRFGMSTDNFKAVKDLNTGAYXISF 923
            DE  ++   E++  K EGN+ F +G Y EA   Y  AL+                    S  +K            RS+  SNR    +K  K E +I +C+KA++LNP+Y++A++RRAE +EK +  +EA+ D K ILE DPS +QA+   +RL               +GKLK++GN +L  FG+ST+NF+  +D +TG+Y I+F
Sbjct:  106 DEEKKRRREESSRLKEEGNEQFKKGDYIEAESSYTRALQTCP-----------------SCFQKD-----------RSVLFSNRAAARMKQEKKEMAISDCSKAIQLNPSYIRAILRRAELYEKTDKLDEALEDYKSILEKDPSVHQAREACMRLPKQIEERNERLKEEMLGKLKDLGNLVLRPFGLSTENFQIKQDSSTGSYSINF 284          
BLAST of DY306209 vs. ExPASy Swiss-Prot
Match: TOM70_RAT (Mitochondrial import receptor subunit TOM70 OS=Rattus norvegicus GN=Tomm70a PE=1 SV=1)

HSP 1 Score: 82.4185 bits (202), Expect = 5.010e-15
Identity = 50/147 (34.01%), Postives = 76/147 (51.70%), Query Frame = 3
Query:  303 DELSQKALNEANEAKLEGNKLFGEGKYEEALLQYEVALRXXXXXXXXXXXXXXXXKEGQSASEKKEVAPAPEMAELRSICHSNRGICFLKLGKFEESIKECTKALELNPTYMKALIRRAEAHEKLEHFEEAIADMKKILEFDPSNNQ 743
            D L   +L+ A  AK +GNK F  GKYE+A+  Y  A+                            + P  + A+L S  + NR   F +L K++E  ++CTKA+ELNP Y+KAL RRA+AHEKL++ +E + D+  +   +   N+
Sbjct:  106 DSLEMSSLDRAQAAKNKGNKYFKAGKYEQAIQCYTEAI---------------------------SLCPTEKNADL-STFYQNRAAAFEQLQKWKEVAQDCTKAVELNPKYVKALFRRAKAHEKLDNKKECLEDVTAVCILEGFQNE 224          
BLAST of DY306209 vs. ExPASy Swiss-Prot
Match: TOM70_MOUSE (Mitochondrial import receptor subunit TOM70 OS=Mus musculus GN=Tomm70a PE=1 SV=1)

HSP 1 Score: 80.8777 bits (198), Expect = 1.458e-14
Identity = 49/147 (33.33%), Postives = 75/147 (51.02%), Query Frame = 3
Query:  303 DELSQKALNEANEAKLEGNKLFGEGKYEEALLQYEVALRXXXXXXXXXXXXXXXXKEGQSASEKKEVAPAPEMAELRSICHSNRGICFLKLGKFEESIKECTKALELNPTYMKALIRRAEAHEKLEHFEEAIADMKKILEFDPSNNQ 743
            D L   +L+ A  AK +GNK F  GKYE+A+  Y  A+                            + P  +  +L S  + NR   F +L K++E  ++CTKA+ELNP Y+KAL RRA+AHEKL++ +E + D+  +   +   N+
Sbjct:  107 DSLEMSSLDSAQAAKNKGNKYFKAGKYEQAIQCYTEAI---------------------------SLCPTEKNVDL-STFYQNRAAAFEQLQKWKEVAQDCTKAVELNPKYVKALFRRAKAHEKLDNKKECLEDVTAVCILEGFQNE 225          
BLAST of DY306209 vs. ExPASy Swiss-Prot
Match: FKBP4_RAT (FK506-binding protein 4 OS=Rattus norvegicus GN=Fkbp4 PE=1 SV=3)

HSP 1 Score: 80.8777 bits (198), Expect = 1.458e-14
Identity = 52/146 (35.62%), Postives = 75/146 (51.37%), Query Frame = 3
Query:  312 SQKALNEANEAKLEGNKLFGEGKYEEALLQYEVALRXXXXXXXXXXXXXXXXKEGQSASEKKEVAPAPEMAELRSICHSNRGICFLKLGKFEESIKECTKALELNPTYMKALIRRAEAHEKLEHFEEAIADMKKILEFDPSNNQAK 749
            S++ L ++N  K  G   F EGKY++ALLQY+  +                  E +S+   +E+    ++  LR   H N  +C LKL  F  +I+ C KALEL+    K L RR EAH  +  F+ A AD +K+L+  PSN  AK
Sbjct:  263 SEEKLEQSNIVKERGTVYFKEGKYKQALLQYKKIVSWL---------------EYESSFSGEEMQ---KVHALRLASHLNLAMCHLKLQAFSAAIESCNKALELDSNNEKGLFRRGEAHLAVNDFDLARADFQKVLQLYPSNKAAK 390          
BLAST of DY306209 vs. ExPASy Swiss-Prot
Match: FKBP4_HUMAN (FK506-binding protein 4 OS=Homo sapiens GN=FKBP4 PE=1 SV=3)

HSP 1 Score: 80.4925 bits (197), Expect = 1.904e-14
Identity = 52/146 (35.62%), Postives = 73/146 (50.00%), Query Frame = 3
Query:  312 SQKALNEANEAKLEGNKLFGEGKYEEALLQYEVALRXXXXXXXXXXXXXXXXKEGQSASEKKEVAPAPEMAELRSICHSNRGICFLKLGKFEESIKECTKALELNPTYMKALIRRAEAHEKLEHFEEAIADMKKILEFDPSNNQAK 749
            S++ L ++   K  G   F EGKY++ALLQY+  +                  E   ++E+ + A A     LR   H N  +C LKL  F  +I+ C KALEL+    K L RR EAH  +  FE A AD +K+L+  P+N  AK
Sbjct:  263 SEEKLEQSTIVKERGTVYFKEGKYKQALLQYKKIVSWLEY-------------ESSFSNEEAQKAQA-----LRLASHLNLAMCHLKLQAFSAAIESCNKALELDSNNEKGLFRRGEAHLAVNDFELARADFQKVLQLYPNNKAAK 390          
BLAST of DY306209 vs. ExPASy Swiss-Prot
Match: FKBP4_RABIT (FK506-binding protein 4 OS=Oryctolagus cuniculus GN=FKBP4 PE=1 SV=3)

HSP 1 Score: 80.1073 bits (196), Expect = 2.486e-14
Identity = 52/146 (35.62%), Postives = 73/146 (50.00%), Query Frame = 3
Query:  312 SQKALNEANEAKLEGNKLFGEGKYEEALLQYEVALRXXXXXXXXXXXXXXXXKEGQSASEKKEVAPAPEMAELRSICHSNRGICFLKLGKFEESIKECTKALELNPTYMKALIRRAEAHEKLEHFEEAIADMKKILEFDPSNNQAK 749
            S++ L ++   K  G   F EGKY++ALLQY+  +                  E   +SE+ + A A     LR   H N  +C LKL  F  +++ C KALEL+    K L RR EAH  +  F+ A AD +K+L+  PSN  AK
Sbjct:  263 SEEKLEQSAIVKERGTVYFKEGKYKQALLQYKKIVSWLEY-------------ESSFSSEEVQKAQA-----LRLASHLNLAMCHLKLQAFSAAVESCNKALELDSNNEKGLFRRGEAHLAVNDFDLARADFQKVLQLYPSNKAAK 390          
BLAST of DY306209 vs. ExPASy Swiss-Prot
Match: FKBP4_MOUSE (FK506-binding protein 4 OS=Mus musculus GN=Fkbp4 PE=1 SV=5)

HSP 1 Score: 80.1073 bits (196), Expect = 2.486e-14
Identity = 52/146 (35.62%), Postives = 74/146 (50.68%), Query Frame = 3
Query:  312 SQKALNEANEAKLEGNKLFGEGKYEEALLQYEVALRXXXXXXXXXXXXXXXXKEGQSASEKKEVAPAPEMAELRSICHSNRGICFLKLGKFEESIKECTKALELNPTYMKALIRRAEAHEKLEHFEEAIADMKKILEFDPSNNQAK 749
            S + L ++N  K  G   F EGKY++ALLQY+  +                  E +S+   +E+    ++  LR   H N  +C LKL  F  +I+ C KALEL+    K L RR EAH  +  F+ A AD +K+L+  PSN  AK
Sbjct:  263 SAEKLEQSNIVKERGTAYFKEGKYKQALLQYKKIVSWL---------------EYESSFSGEEMQ---KVHALRLASHLNLAMCHLKLQAFSAAIESCNKALELDSNNEKGLFRRGEAHLAVNDFDLARADFQKVLQLYPSNKAAK 390          
BLAST of DY306209 vs. ExPASy Swiss-Prot
Match: TOM70_HUMAN (Mitochondrial import receptor subunit TOM70 OS=Homo sapiens GN=TOMM70A PE=1 SV=1)

HSP 1 Score: 79.7221 bits (195), Expect = 3.247e-14
Identity = 49/145 (33.79%), Postives = 74/145 (51.03%), Query Frame = 3
Query:  309 LSQKALNEANEAKLEGNKLFGEGKYEEALLQYEVALRXXXXXXXXXXXXXXXXKEGQSASEKKEVAPAPEMAELRSICHSNRGICFLKLGKFEESIKECTKALELNPTYMKALIRRAEAHEKLEHFEEAIADMKKILEFDPSNNQ 743
            L   +L+ A  AK +GNK F  GKYE+A+  Y  A+                            + P  +  +L S  + NR   F +L K++E  ++CTKA+ELNP Y+KAL RRA+AHEKL++ +E + D+  +   +   NQ
Sbjct:  106 LDMNSLDRAQAAKNKGNKYFKAGKYEQAIQCYTEAI---------------------------SLCPTEKNVDL-STFYQNRAAAFEQLQKWKEVAQDCTKAVELNPKYVKALFRRAKAHEKLDNKKECLEDVTAVCILEGFQNQ 222          
The following BLAST results are available for this feature:
BLAST of DY306209 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 22
Match NameE-valueIdentityDescription
TTC1_HUMAN1.774e-2837.20Tetratricopeptide repeat protein 1 OS=Homo sapiens... [more]
TTC1_MOUSE6.739e-2835.75Tetratricopeptide repeat protein 1 OS=Mus musculus... [more]
TTC1_BOVIN9.732e-2735.27Tetratricopeptide repeat protein 1 OS=Bos taurus G... [more]
TOM70_RAT5.010e-1534.01Mitochondrial import receptor subunit TOM70 OS=Rat... [more]
TOM70_MOUSE1.458e-1433.33Mitochondrial import receptor subunit TOM70 OS=Mus... [more]
FKBP4_RAT1.458e-1435.62FK506-binding protein 4 OS=Rattus norvegicus GN=Fk... [more]
FKBP4_HUMAN1.904e-1435.62FK506-binding protein 4 OS=Homo sapiens GN=FKBP4 P... [more]
FKBP4_RABIT2.486e-1435.62FK506-binding protein 4 OS=Oryctolagus cuniculus G... [more]
FKBP4_MOUSE2.486e-1435.62FK506-binding protein 4 OS=Mus musculus GN=Fkbp4 P... [more]
TOM70_HUMAN3.247e-1433.79Mitochondrial import receptor subunit TOM70 OS=Hom... [more]

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Properties
Property NameValue
Genbank descriptionIC0AAA96DC10RM1 CitNFL Citrus clementina cDNA 5, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>DY306209 ID=DY306209; Name=DY306209; organism=Citrus clementina; type=EST; length=1083bp
AAATTAAATAATTTGTTGAGTTTCTTCATATCATTCGTAGGAGAGCCAGA
CCCCTGAAGGCTAAACGCTAATAAATCCTATCTCCAACTCTTCAGTCAAC
TGAAAAAATGGTGCTGATAGAACAAGAGCCAGAAGACGCAAAAGAGACTG
TCGCAGCAAATCCTCCAAAAGCAGCATCGACAGCAAACGAAAACGGCGAT
GTATCCGACGGATTCGAAACCGCCAGTGAACGCGACGTCAGCGACGACGA
CGACGACGACGAGGAGCCGAAACAAGAAGAACAGCCTGTTGCTCTAAACG
ACGACGAATTGAGCCAGAAAGCGTTAAATGAAGCGAATGAGGCGAAACTT
GAAGGGAATAAGTTGTTTGGTGAAGGAAAATATGAGGAGGCGTTGTTACA
GTATGAGGTAGCTTTGCGAGTGGCATCGGTGCCGGAGAGAGCGGAATCAG
CTTCGGCGCCGGAGGCGAAGGAAGGGCAGTCGGCATCGGAGAAGAAGGAA
GTGGCGCCGGCGCCGGAAATGGCAGAGCTGCGTTCCATATGCCATTCGAA
TCGTGGAATATGCTTTTTGAAGCTTGGAAAATTCGAGGAGTCTATCAAGG
AATGCACAAAGGCGTTGGAGCTTAATCCTACATATATGAAAGCTCTGATC
AGAAGAGCAGAGGCGCATGAAAAGCTTGAACACTTTGAAGAGGCTATTGC
TGATATGAAGAAAATCTTGGAATTTGATCCTTCAAATAATCAAGCCAAGA
GAACCATTCTTCGTTTGGAACCACTGGCAGAAGAAAAACGCGAAAAGATG
AAGGAAGAGATGATTGGAAAGCTAAAAGAAATGGGTAACTCTATCCTGGG
CCGTTTTGGGATGAGCACTGACAACTTCAAAGCTGTTAAAGATCTGAACA
CTGGCGCCTACTNCATATCATTCCAGAAATAGGTTGGTTCANTATAACTT
TTATTTTTTATTTGGAACCTAGTGTGAGAAAGACTGCACTCAGGCCATAT
AGTGAAACAGGGAATCCTCCCTTTGGGCATCACACTGGTAATGGTGATTA
AAGGTCTTACCAACCTGGAGCAAACAGTTTTAA
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