DY306210

Overview
NameDY306210
Unique NameDY306210
TypeEST
OrganismCitrus clementina (Clementine)
Sequence length1082
Libraries
Library NameType
CitNFLcdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Alignments
Feature NameTypeLocationAnalysis
Ccv1_Contig13726 contig Ccv1_Contig13726:222..1303. BLAST: Citrus Unigene V1 Contigs to Prunus persica proteins V1
Homology
BLAST of DY306210 vs. ExPASy Swiss-Prot
Match: SUBL_ARATH (Subtilisin-like protease OS=Arabidopsis thaliana GN=ARA12 PE=1 SV=1)

HSP 1 Score: 523.087 bits (1346), Expect = 1.110e-147
Identity = 254/335 (75.82%), Postives = 288/335 (85.97%), Query Frame = -3
Query:    1 VTGEKAESIEQRPGILLVLPELKYELHTTGSPEFLGLDK-SANLSPTSGSASEVIVGVLDTGVWPESKSFDDTGLGPVPSSWKGACETGTNFNASNCNRKLIGARYFARGYEATLGPIDESKESKSPRDDDGHGTHTASTAAGSVVEGASLFGYXXXXXXXXXXXXXXXAYKVCWVGGCFSSDILAAIEQAIDDNVNVLSMSLGGGTSDYYKDSVAIGAFAAMEKGILVSCSAGNAGPSSYSLSNVAPWITTVGAGTLDRDFPAFVSLGNGQNYSGVSLYKGDGLPGKLLPFVYAGNASNATNGNLCMMDTLIPEKVAGKIVMCDRGVNARVQKG 1002
            +T E+A+S+  +PG++ VLPE +YELHTT +P FLGLD+ +A+L P +GS S+V+VGVLDTGVWPESKS+ D G GP+PSSWKG CE GTNF AS CNRKLIGAR+FARGYE+T+GPIDESKES+SPRDDDGHGTHT+STAAGSVVEGASL GY                YKVCW+GGCFSSDILAAI++AI DNVNVLSMSLGGG SDYY+D VAIGAFAAME+GILVSCSAGNAGPSS SLSNVAPWITTVGAGTLDRDFPA   LGNG+N++GVSL+KG+ LP KLLPF+YAGNASNATNGNLCM  TLIPEKV GKIVMCDRG+NARVQKG
Sbjct:   80 LTQEEADSLMTQPGVISVLPEHRYELHTTRTPLFLGLDEHTADLFPEAGSYSDVVVGVLDTGVWPESKSYSDEGFGPIPSSWKGGCEAGTNFTASLCNRKLIGARFFARGYESTMGPIDESKESRSPRDDDGHGTHTSSTAAGSVVEGASLLGYASGTARGMAPRARVAVYKVCWLGGCFSSDILAAIDKAIADNVNVLSMSLGGGMSDYYRDGVAIGAFAAMERGILVSCSAGNAGPSSSSLSNVAPWITTVGAGTLDRDFPALAILGNGKNFTGVSLFKGEALPDKLLPFIYAGNASNATNGNLCMTGTLIPEKVKGKIVMCDRGINARVQKG 414          
BLAST of DY306210 vs. ExPASy Swiss-Prot
Match: CUCM1_CUCME (Cucumisin OS=Cucumis melo PE=1 SV=1)

HSP 1 Score: 251.906 bits (642), Expect = 4.774e-66
Identity = 140/333 (42.04%), Postives = 195/333 (58.56%), Query Frame = -3
Query:   31 FFI*VTGEKAESIEQRPGILLVLPELKYELHTTGSPEFLGLDKSANLSPTSGSASEVIVGVLDTGVWPESKSFDDTGLGPVPSSWKGACETGTNFNASNCNRKLIGARYFARGYEATLGPIDESKESKSPRDDDGHGTHTASTAAGSVVEGASLFGYXXXXXXXXXXXXXXXAYKVCWVGGCFSSDILAAIEQAIDDNVNVLSMSLGGGTS-DYYKDSVAIGAFAAMEKGILVSCSAGNAGPSSYSLSNVAPWITTVGAGTLDRDFPAFVSLGNGQNYSGVSLYKGDGLPGKLLPFVYAGNASNA----TNGNLCMMDTLIPEKVAGKIVMCD 1014
            F + +T E+AE I    G++ V      ELHTT S +FLG   +  +   S   S ++VGVLDTG+WPES SFDD G  P P  WKG CET  NF    CNRK+IGAR +  G   + G ++       PRD +GHGTHTASTAAG +V  A+L+G                AYKVCW  GC  +DILAA + AI D V+++S+S+GG     Y+ D++AIG+F A+E+GIL S SAGN GP+ ++ ++++PW+ +V A T+DR F   V +GNGQ++ GVS+   D    +  P V   +  N     +    C   ++ P  + GKIV+C+
Sbjct:   80 FAVKLTEEEAEKIASMEGVVSVFLNEMNELHTTRSWDFLGFPLT--VPRRSQVESNIVVGVLDTGIWPESPSFDDEGFSPPPPKWKGTCETSNNFR---CNRKIIGARSYHIGRPISPGDVN------GPRDTNGHGTHTASTAAGGLVSQANLYGLGLGTARGGVPLARIAAYKVCWNDGCSDTDILAAYDDAIADGVDIISLSVGGANPRHYFVDAIAIGSFHAVERGILTSNSAGNGGPNFFTTASLSPWLLSVAASTMDRKFVTQVQIGNGQSFQGVSINTFD---NQYYPLVSGRDIPNTGFDKSTSRFCTDKSVNPNLLKGKIVVCE 398          
BLAST of DY306210 vs. ExPASy Swiss-Prot
Match: XSP1_ARATH (Xylem serine proteinase 1 OS=Arabidopsis thaliana GN=XSP1 PE=2 SV=1)

HSP 1 Score: 232.646 bits (592), Expect = 2.997e-60
Identity = 133/309 (43.04%), Postives = 181/309 (58.58%), Query Frame = -3
Query:   25 ELHTTGSPEFLGLDKSANLSPTSGSASEVIVGVLDTGVWPESKSFDDTGLGPVPSSWKGACETGTNFNASNCNRKLIGARYFARGYEATLGPIDESKESKSPRDDDGHGTHTASTAAGSVVEGASLFGYXXXXXXXXXXXXXXXAYKVCWV-GGCFSSDILAAIEQAIDDNVNVLSMSLGGGTSDYYKDSVAIGAFAAMEKGILVSCSAGNAGPSSYSLSNVAPWITTVGAGTLDRDFPAFVSLGNGQNYS--GVSLYKGDGLPGKLLPFVYAGNASNATN----GNLCMMDTLIPEKVAGKIVMCDRG 930
            +LHTT S +F+GL  +A     +    +VI+GVLDTG+ P+S+SF D GLGP P+ WKG+C    NF  + CN K+IGA+YF        G      E +SP D DGHGTHT+ST AG +V  ASL+G                 YKVCW   GC   DILA  E AI D V ++S+S+GG  +DY  DS+++G+F AM KGIL   SAGN GPSS +++N  PWI TV A  +DR F + + LGNG+++S  G+S++       K  P V   +A+  T+       C  D+L  +KV GK+++C  G
Sbjct:  113 KLHTTKSWDFVGLPLTAKRHLKA--ERDVIIGVLDTGITPDSESFLDHGLGPPPAKWKGSCGPYKNF--TGCNNKIIGAKYFKHDGNVPAG------EVRSPIDIDGHGTHTSSTVAGVLVANASLYGIANGTARGAVPSARLAMYKVCWARSGCADMDILAGFEAAIHDGVEIISISIGGPIADYSSDSISVGSFHAMRKGILTVASAGNDGPSSGTVTNHEPWILTVAASGIDRTFKSKIDLGNGKSFSGMGISMFSP---KAKSYPLVSGVDAAKNTDDKYLARYCFSDSLDRKKVKGKVMVCRMG 408          
The following BLAST results are available for this feature:
BLAST of DY306210 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 3
Match NameE-valueIdentityDescription
SUBL_ARATH1.110e-14775.82Subtilisin-like protease OS=Arabidopsis thaliana G... [more]
CUCM1_CUCME4.774e-6642.04Cucumisin OS=Cucumis melo PE=1 SV=1[more]
XSP1_ARATH2.997e-6043.04Xylem serine proteinase 1 OS=Arabidopsis thaliana ... [more]
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Properties
Property NameValue
Genbank descriptionIC0AAA97AD04RM1 CitNFL Citrus clementina cDNA 5, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>DY306210 ID=DY306210; Name=DY306210; organism=Citrus clementina; type=EST; length=1082bp
TCCTTTCTGAACTCTAGCATTCACTCCACGATCGCACATCACAATCTTGC
CTGCAACTTTCTCGGGTATCAAAGTGTCCATCATGCATAAATTCCCATTT
GTTGCATTACTAGCATTACCAGCGTAAACAAATGGTAACAATTTCCCAGG
TAAACCATCCCCTTTATAAAGTGACACACCAGAGTAGTTTTGTCCGTTGC
CAAGACTAACAAAAGCTGGGAAATCTCGATCCAGTGTGCCTGCACCTACA
GTAGTTATCCATGGAGCCACGTTGGATAAACTGTAGGAGCTTGGACCAGC
ATTTCCAGCTGAGCAAGAGACTAGAATCCCTTTCTCCATTGCTGCAAAAG
CACCAATCGCAACACTATCCTTGTAATAATCAGACGTGCCACCACCAAGA
GACATTGATAAAACATTGACATTATCATCGATGGCCTGCTCTATGGCCGC
CAATATATCAGAGCTAAAACAACCACCAACCCAGCACACCTTGTAGGCAG
CAACCCTGGCGCGCGTGGCCATGCCACGCGCCGTCCCGGCCGCATAGCCG
AACAAGCTGGCACCTTCAACAACCGATCCAGCTGCAGTACTGGCAGTATG
AGTGCCATGGCCGTCATCATCTCTAGGAGATTTTGACTCCTTGCTTTCGT
CAATTGGACCCAAAGTAGCCTCATAGCCTCTTGCAAAGTATCTTGCACCA
ATTAATTTTCTGTTGCAATTAGATGCATTAAAATTTGTACCGGTTTCACA
AGCGCCTTTCCAGCTACTTGGTACAGGACCAAGTCCTGTATCGTCAAAGC
TCTTGCTTTCGGGCCAAACTCCAGTATCCAACACTCCAACTATAACTTCA
CTCGCCGAGCCGGACGTNGGGGACAAATTGGCACTTTTGTCGAGTCCGAG
AAACTCAGGGCTACCAGTTGTGTGCAACTCGTACTTCAACTCAGGCAAAA
CCAAGAGGATCCCAGGTCGTTGCTCGATTGACTCGGCCTTCTCTCCCGTT
ACCTAAATGAAAAAATCCAGGGATCAATTTGTCCTAAGTGTAAAAAAATT
CCCCCTAAAATCCGAACCCCAATTTTAAACAA
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