DY306212

Overview
NameDY306212
Unique NameDY306212
TypeEST
OrganismCitrus clementina (Clementine)
Sequence length1010
Libraries
Library NameType
CitNFLcdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Alignments
Feature NameTypeLocationAnalysis
Ccv1_Contig11635 contig Ccv1_Contig11635:3..994. BLAST: Citrus Unigene V1 Contigs to Prunus persica proteins V1
Homology
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BLAST of DY306212 vs. ExPASy Swiss-Prot
Match: Y4837_ARATH (KH domain-containing protein At4g18375 OS=Arabidopsis thaliana GN=At4g18375 PE=2 SV=1)

HSP 1 Score: 68.1662 bits (165), Expect = 8.886e-11
Identity = 48/178 (26.97%), Postives = 95/178 (53.37%), Query Frame = 3 
Query:  138 AKAQDVLFRIIVPSRQIGKVIGKEGHRIQKIREEXXXXXXXXXXXXR--HEERVIIISSKDNDNVVSDAENALQQIAALILKDDDSNSEASKVAAGHVAANTIRLLIAGSQAGCLIGMSGQNIEKLRNSSGATIVILAPNQLPLCASAHESDRVVQISGDVPAVLNALVEIGNQLREN 665
            +++++++F+++ P   I +VIGK G  I++IRE             +   +E VII+++ ++     D   ++   A L+L++  ++ +A  V         ++LL++    GC+IG SG  I ++R  + A I          C S  + D +V++SG+V +V +AL++I  +LRE+
Sbjct:  307 SRSEELVFKVLCPLCNIMRVIGKGGSTIKRIREASGSCIEVNDSRTKCGDDECVIIVTATESP----DDMKSMAVEAVLLLQEYINDEDAENVK--------MQLLVSSKVIGCVIGKSGSVINEIRKRTNANI----------CISKGKKDDLVEVSGEVSSVRDALIQIVLRLRED 462
The following BLAST results are available for this feature:
BLAST of DY306212 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 1
Match NameE-valueIdentityDescription
Y4837_ARATH8.886e-1126.97KH domain-containing protein At4g18375 OS=Arabidop... [more]
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Properties
Property NameValue
Genbank descriptionIC0AAA9DC01RM1 CitNFL Citrus clementina cDNA 5, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>DY306212 ID=DY306212; Name=DY306212; organism=Citrus clementina; type=EST; length=1010bp
CATTAATGGCCGAACAAGGCGAAATTACAGTAAACCCTACCGTGTCCGTC
GTCACCGAACCTGAACCGCGGCACGATGTCTCCGGAAAGCGCCGCCGCGA
AGACGGAGAAATCGAAGGATCGGATCCGAAACGGAGAGCGAAAGCACAAG
ACGTCTTGTTCAGAATAATAGTACCTTCAAGACAGATTGGAAAGGTCATA
GGGAAAGAAGGACATAGAATCCAGAAGATTCGAGAAGAGACTAAGGCCAC
CATCAAAATCGCTGATGCTATTGCTCGACATGAAGAGCGTGTTATTATTA
TAAGTTCTAAAGATAATGATAATGTGGTTTCTGATGCTGAAAATGCGCTT
CAACAAATAGCCGCTTTGATTCTAAAGGATGATGATAGCAATTCAGAGGC
ATCAAAAGTAGCAGCTGGGCATGTCGCTGCAAACACAATTAGACTTTTGA
TTGCTGGGTCCCAAGCAGGTTGTTTGATTGGGATGTCTGGTCAAAACATT
GAGAAGTTAAGGAATTCATCTGGTGCCACAATTGTAATTCTTGCTCCTAA
TCAACTGCCTTTATGCGCATCTGCTCATGAATCTGATAGAGTCGTACAGA
TATCTGGCGATGTTCCTGCAGTATTAAATGCTTTGGTGGAGATTGGTAAT
CAGCTAAGGGAAAACCCACCACGACAAGTTATCTCCATCAGCCCAGCCTA
CAATTATAGTGCAATAAGACCAGCTCAACCATTTGTGGAACCAACTTCAG
GACAACCACTCTTGCAGCTGACTATGTAACCTTCGAGATGTTGATTTCGG
AATCATTGGTTGGAGGGTTGATTGGCCGGTGTGGCTCAATATATCAAGGA
TCAGAAATGAGTCTGGAGNCATGATTAAGGTTNNATGGTGGGAAAGGTGA
ACAAAAGCACAGGCATATTCAGTTTGGGTGGGAGCGCTCAACAGGTAGCA
TTGGCCAAACAGAGGGGTGATGAATACATATATTCTCAGTTGATACAGCA
AGCTGGTGCA
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