DY306214

Overview
NameDY306214
Unique NameDY306214
TypeEST
OrganismCitrus clementina (Clementine)
Sequence length1038
Libraries
Library NameType
CitNFLcdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Alignments
Feature NameTypeLocationAnalysis
Ccv1_Contig6178 contig Ccv1_Contig6178:47..1085. BLAST: Citrus Unigene V1 Contigs to Prunus persica proteins V1
Homology
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BLAST of DY306214 vs. ExPASy Swiss-Prot
Match: ALKK_PSEOL (Medium-chain-fatty-acid--CoA ligase OS=Pseudomonas oleovorans GN=alkK PE=3 SV=1)

HSP 1 Score: 81.6481 bits (200), Expect = 8.051e-15
Identity = 60/219 (27.40%), Postives = 103/219 (47.03%), Query Frame = 1 
Query:  223 WSDTHHRCLQLASSLSSIGISRGHVVSVVSPNVPALYELHFAVPFAAAVLNTINTRLDARTVSLLLQHCQSKLVFVDFHSRALVREAVSLFPPDLKPPPLVLIXXXXXXXXXXXXHHPNISDDQF--FSTYESLVAKGDPEFEWIRPRTEWDPIVLNYTSGTTMSPKGVVHCHRGIFIVAVNTL--SDWSVPTQPVYLWTLPMFHSHGWCFPWAMAAVG 867
            W +   R  +LAS+L  +G++     + ++ N     E+++AV  A  V +TIN RL    ++ ++ H + K+V +D     ++ E     P   K    VL+            H+ + +  Q      YE L+ +GD  + W     E +   L YTSGTT +PKGV++ HR   + ++ T      ++  +   L  +PMFH + W  P++ A VG
Sbjct:   42 WKEVELRARKLASALGKMGLTPSDRCATIAWNNIRHLEVYYAVSGAGMVCHTINPRLFIEQITYVINHAEDKVVLLDDTFLPIIAEIHGSLP---KVKAFVLM-----------AHNNSNASAQMPGLIAYEDLIGQGDDNYIW-PDVDENEASSLCYTSGTTGNPKGVLYSHRSTVLHSMTTAMPDTLNLSARDTILPVVPMFHVNAWGTPYSAAMVG 245
The following BLAST results are available for this feature:
BLAST of DY306214 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 1
Match NameE-valueIdentityDescription
ALKK_PSEOL8.051e-1527.40Medium-chain-fatty-acid--CoA ligase OS=Pseudomonas... [more]
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Properties
Property NameValue
Genbank descriptionIC0AAA9DE05RM1 CitNFL Citrus clementina cDNA 5, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>DY306214 ID=DY306214; Name=DY306214; organism=Citrus clementina; type=EST; length=1038bp
TCATATCATTTTTCTTCTCTATTTCGCTGCCTTTAAAGATCCATCCAATC
CAACCAATCCAACAGAGACGGAGAATTGGAGATAAGATAAGTAGAAAAAA
TGGAGCAGCTAAAGCCGAGTCCTGCGAATTCAACCCCACTAACTCCTCTT
GTTTTCTTAGAAAGAGCCGCCACCGTCTACGGTGATAGCCCCTCCATCAT
CTACAACAACATCACTTACACGTGGTCAGATACTCACCATCGATGTCTCC
AGCTGGCTTCTTCCCTTTCATCCATCGGCATCTCCAGAGGCCACGTCGTC
TCCGTTGTTTCCCCCAATGTTCCCGCTTTATACGAGCTCCACTTTGCTGT
CCCCTTCGCTGCTGCCGTTCTCAACACCATTAACACTCGCCTTGACGCGC
GGACCGTCTCCTTGCTCCTTCAGCACTGCCAGTCAAAGCTTGTCTTCGTC
GATTTCCACTCACGCGCTCTTGTACGGGAAGCTGTTTCCCTTTTCCCACC
CGATCTCAAACCTCCCCCTCTGGTCCTCATATCTGACGATGACGATGCTG
CCGTGTCATCACAGAGTCATCATCCCAATATTTCCGACGATCAGTTCTTC
TCTACTTATGAGAGCCTCGTGGCGAAAGGTGATCCTGAGTTTGAGTGGAT
CCGCCCCAGGACAGAGTGGGACCCAATTGTGCTGAACTACACATCCGGTA
CGACGATGTCCCCAAAAGGAGTGGTCCACTGCCACCGTGGCATCTTCATT
GTAGCCGTTAATACCTTATCTGATTGGTCAGTACCCACACAGCCGGTTTA
CTTGTGGACACTACCCATGTTCCACTCTCACGGGTGGTGTTTCCCGTGGG
CCATGGCGGCTGTTGGTGGCACCACATCTGCATACGNCAGTTCGACGCTT
CAATAATCTTTGACTTGATTAGACGTCATGGTGTCACTCACATGTGCGGA
GCTCCCGGTGTCCTCCACATGCTATCTAACTACCGGGATCCCGACAAGAA
GCCGTTAAAATTAGCAAAACCCGGTTCACCTCGTCCCA
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