DY306215

Overview
NameDY306215
Unique NameDY306215
TypeEST
OrganismCitrus clementina (Clementine)
Sequence length1035
Libraries
Library NameType
CitNFLcdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Alignments
Feature NameTypeLocationAnalysis
Ccv1_Contig12593 contig Ccv1_Contig12593:91..1125. BLAST: Citrus Unigene V1 Contigs to Prunus persica proteins V1
Homology
BLAST of DY306215 vs. ExPASy Swiss-Prot
Match: THOC5_XENTR (THO complex subunit 5 homolog OS=Xenopus tropicalis GN=thoc5 PE=2 SV=1)

HSP 1 Score: 132.109 bits (331), Expect = 5.149e-30
Identity = 75/248 (30.24%), Postives = 135/248 (54.44%), Query Frame = 2
Query:  140 YEMLRDTKSSIEEIVSEMITIKSESKPKS--QLRELVTQMFINFVTLRQVNRTLLVEEDRVKAETERAKAPVDSTTLQLHNLMYEKSHYVKAIKACKDFRSKYPDIDLVPEEEFHRDAPEKIKGSKLSNDISHDLMLKRLNYELHQRKELCKLHEKLEQHKKSLQEMIANRXXXXXXXXXXXXXXXXXXXPIQSQLGVLHTKKIKQLNSAELLPPPLYVIYSQFTAQKEAFGENIDLEIVGSLKDAQA 877
            Y++ +DT   ++ ++SE+  +K++    S  ++ E   Q  ++F+TL+++NR   +   + + +T  AK  VD+  LQL NL+YE  H  K I  C +F+SK+ +I+LV  EEF+ +AP  I   ++++  SH   L RL++EL QRK L + +++    K+ + + I  +                   P+Q  L +      KQ  +A  LPPPLYV++ Q +A  +A    + + I G++++A+A
Sbjct:   47 YQLYKDTCLDLQRLMSEIQDLKNKGGKDSAMEIEEKKVQSCVHFMTLKKLNRLAHIRLKKARDQTHEAKQKVDAYHLQLQNLLYEVMHLQKEITKCLEFKSKHEEIELVSVEEFYSEAPATISKPEITSTDSHQQTLSRLDWELEQRKRLAEKYKECLASKEKILKEIEIKKEYLNSLQPQLNSIMQASLPVQEYLSMPFDCMHKQYETARHLPPPLYVLFVQASAYSQACDRKLVVTIEGNVEEARA 294          
BLAST of DY306215 vs. ExPASy Swiss-Prot
Match: THO5B_XENLA (THO complex subunit 5 homolog B OS=Xenopus laevis GN=thoc5-B PE=1 SV=1)

HSP 1 Score: 132.109 bits (331), Expect = 5.149e-30
Identity = 75/248 (30.24%), Postives = 135/248 (54.44%), Query Frame = 2
Query:  140 YEMLRDTKSSIEEIVSEMITIKSESKPKS--QLRELVTQMFINFVTLRQVNRTLLVEEDRVKAETERAKAPVDSTTLQLHNLMYEKSHYVKAIKACKDFRSKYPDIDLVPEEEFHRDAPEKIKGSKLSNDISHDLMLKRLNYELHQRKELCKLHEKLEQHKKSLQEMIANRXXXXXXXXXXXXXXXXXXXPIQSQLGVLHTKKIKQLNSAELLPPPLYVIYSQFTAQKEAFGENIDLEIVGSLKDAQA 877
            Y++ +DT  +++ ++SE+  +KS+    S  ++ E   Q  ++F+TL+++NR   +   + + +T  AK  VD+  LQL NL+YE  H  K I  C +F+SK+ +I+LV  EEF+ DAP  I   ++++   H   L RL++EL QRK L + +++    K+ + + I  +                   P+Q  L +      KQ  +A  LP PLYV++ Q +A  +A  + + + I G++++A+A
Sbjct:   47 YQLYKDTCVALQRLMSEIQDLKSKGSKDSAMEIEEKKIQSCVHFMTLKKLNRLANIRLKKARDQTHEAKQKVDAYNLQLQNLLYEVMHLQKEITKCLEFKSKHEEIELVSVEEFYSDAPAAISKPEITSTDPHQQTLSRLDWELEQRKRLAEKYKECLASKEKILKEIEIKKEYLNTLQPQLNSIMQASLPVQEYLSMPFDCMHKQYETARHLPAPLYVLFVQASAYSQACDQKLVVAIEGNVEEARA 294          
BLAST of DY306215 vs. ExPASy Swiss-Prot
Match: THOC5_DANRE (THO complex subunit 5 homolog OS=Danio rerio GN=thoc5 PE=2 SV=1)

HSP 1 Score: 131.339 bits (329), Expect = 8.782e-30
Identity = 78/253 (30.83%), Postives = 137/253 (54.15%), Query Frame = 2
Query:  140 YEMLRDTKSSIEEIVSEMITIKS----ESKPKSQLRELVTQMFINFVTLRQVNRTLLVEEDRVKAETERAKAPVDSTTLQLHNLMYEKSHYVKAIKACKDFRSKYPDIDLVPEEEFHRDAPEKIKGSKLSNDISHDLMLKRLNYELHQRKELCKLHEKLEQHKKSLQEMIANRXXXXXXXXXXXXXXXXXXXPIQSQLGVLHTKKIKQLNSAELLPPPLYVIYSQFTAQKEAFGENIDLEIVGSLKDAQAFAR 886
            Y + ++T +++ +++SE+  +K+    +   + +LR    Q  I+F+TL+++NR   +   + + +T  AK  VD   LQL NL+YE  H  K I  C +F+S++ +I+LV E+EF +DAP +I   +++ +  H L L RL++EL QRK L + ++     K+ +Q+ I  +                   P+Q  L +      KQ   A  LPPPLYV++ Q  A  +A  +N+ + I G + +A+A +R
Sbjct:   52 YTLYKETCAALAKLMSEIQELKTSGAKDGSAEIELRR--KQSSIHFITLKKLNRLAHMRLKKGRDQTHEAKQRVDVLHLQLQNLLYEVMHLQKEIGKCLEFKSQHEEIELVSEDEFFQDAPAEISRPQVTREDHHQLTLARLDWELDQRKRLAEQYKTSLSSKEKIQKAIEQKREYLSSLQPGLHNIMQASLPVQEYLSMPFEHMQKQAEVARHLPPPLYVLFVQAGAYGQACDKNLTVSIRGDVDEAKALSR 302          
BLAST of DY306215 vs. ExPASy Swiss-Prot
Match: THOC5_RAT (THO complex subunit 5 homolog OS=Rattus norvegicus GN=Thoc5 PE=2 SV=1)

HSP 1 Score: 129.798 bits (325), Expect = 2.555e-29
Identity = 76/248 (30.65%), Postives = 133/248 (53.63%), Query Frame = 2
Query:  140 YEMLRDTKSSIEEIVSEMITIKSESKPKS--QLRELVTQMFINFVTLRQVNRTLLVEEDRVKAETERAKAPVDSTTLQLHNLMYEKSHYVKAIKACKDFRSKYPDIDLVPEEEFHRDAPEKIKGSKLSNDISHDLMLKRLNYELHQRKELCKLHEKLEQHKKSLQEMIANRXXXXXXXXXXXXXXXXXXXPIQSQLGVLHTKKIKQLNSAELLPPPLYVIYSQFTAQKEAFGENIDLEIVGSLKDAQA 877
            YE+ + T   ++ +++E+  +KS+       ++ E   Q  ++F+TL+++NR   +   + + +T  AK  VD+  LQL NL+YE  H  K I  C +F+SK+ +IDLV  EEF+ +AP  I  ++++    H   L RL++EL QRK L + + +   +K+ + + I  +                   P+Q  L +   +  KQ  +A  LPPPLYV++ Q TA  +A  + + + I GS+ +A+A
Sbjct:   52 YELYKYTCQELQRLMAEIQDLKSKGSKDVAIEIEERRIQSCVHFMTLKKLNRLAHIRLKKGRDQTHEAKQKVDAYHLQLQNLLYEVMHLQKEITKCLEFKSKHEEIDLVSLEEFYSEAPPNISKAEITMGDPHQQTLARLDWELEQRKRLAEKYRECLSNKEKILKEIEVKKEYLSSLQPRLNSIMQASLPVQEYLFMPFDQAHKQYETARHLPPPLYVLFVQATAYGQACDKTLSVAIEGSVDEAKA 299          
BLAST of DY306215 vs. ExPASy Swiss-Prot
Match: THOC5_MOUSE (THO complex subunit 5 homolog OS=Mus musculus GN=Thoc5 PE=1 SV=2)

HSP 1 Score: 129.798 bits (325), Expect = 2.555e-29
Identity = 76/248 (30.65%), Postives = 133/248 (53.63%), Query Frame = 2
Query:  140 YEMLRDTKSSIEEIVSEMITIKSESKPKS--QLRELVTQMFINFVTLRQVNRTLLVEEDRVKAETERAKAPVDSTTLQLHNLMYEKSHYVKAIKACKDFRSKYPDIDLVPEEEFHRDAPEKIKGSKLSNDISHDLMLKRLNYELHQRKELCKLHEKLEQHKKSLQEMIANRXXXXXXXXXXXXXXXXXXXPIQSQLGVLHTKKIKQLNSAELLPPPLYVIYSQFTAQKEAFGENIDLEIVGSLKDAQA 877
            YE+ + T   ++ +++E+  +KS+       ++ E   Q  ++F+TL+++NR   +   + + +T  AK  VD+  LQL NL+YE  H  K I  C +F+SK+ +IDLV  EEF+ +AP  I  ++++    H   L RL++EL QRK L + + +   +K+ + + I  +                   P+Q  L +   +  KQ  +A  LPPPLYV++ Q TA  +A  + + + I GS+ +A+A
Sbjct:   52 YELYKYTCQELQRLMAEIQDLKSKGSKDVAIEIEERRIQSCVHFMTLKKLNRLAHIRLKKGRDQTHEAKQKVDAYHLQLQNLLYEVMHLQKEITKCLEFKSKHEEIDLVSLEEFYSEAPPSISKAEITMGDPHQQTLARLDWELEQRKRLAEKYRECLSNKEKILKEIEVKRDYLSSLQPRLNSIMQASLPVQEYLFMPFDQAHKQYETARHLPPPLYVLFVQATAYGQACDKTLSVAIEGSVDEAKA 299          
BLAST of DY306215 vs. ExPASy Swiss-Prot
Match: THOC5_HUMAN (THO complex subunit 5 homolog OS=Homo sapiens GN=THOC5 PE=1 SV=2)

HSP 1 Score: 129.028 bits (323), Expect = 4.359e-29
Identity = 76/248 (30.65%), Postives = 133/248 (53.63%), Query Frame = 2
Query:  140 YEMLRDTKSSIEEIVSEMITIKSESKPKS--QLRELVTQMFINFVTLRQVNRTLLVEEDRVKAETERAKAPVDSTTLQLHNLMYEKSHYVKAIKACKDFRSKYPDIDLVPEEEFHRDAPEKIKGSKLSNDISHDLMLKRLNYELHQRKELCKLHEKLEQHKKSLQEMIANRXXXXXXXXXXXXXXXXXXXPIQSQLGVLHTKKIKQLNSAELLPPPLYVIYSQFTAQKEAFGENIDLEIVGSLKDAQA 877
            YE+ + T   ++ +++E+  +KS        ++ E   Q  ++F+TL+++NR   +   + + +T  AK  VD+  LQL NL+YE  H  K I  C +F+SK+ +IDLV  EEF+++AP  I  ++++    H   L RL++EL QRK L + + +   +K+ + + I  +                   P+Q  L +   +  KQ  +A  LPPPLYV++ Q TA  +A  + + + I GS+ +A+A
Sbjct:   52 YELYKYTCQELQRLMAEIQDLKSRGGKDVAIEIEERRIQSCVHFMTLKKLNRLAHIRLKKGRDQTHEAKQKVDAYHLQLQNLLYEVMHLQKEITKCLEFKSKHEEIDLVSLEEFYKEAPPDISKAEVTMGDPHQQTLARLDWELEQRKRLAEKYRECLSNKEKILKEIEVKKEYLSSLQPRLNSIMQASLPVQEYLFMPFDQAHKQYETARHLPPPLYVLFVQATAYGQACDKTLSVAIEGSVDEAKA 299          
BLAST of DY306215 vs. ExPASy Swiss-Prot
Match: THOC5_CHICK (THO complex subunit 5 homolog OS=Gallus gallus GN=THOC5 PE=2 SV=1)

HSP 1 Score: 128.642 bits (322), Expect = 5.693e-29
Identity = 76/251 (30.28%), Postives = 136/251 (54.18%), Query Frame = 2
Query:  131 ISAYEMLRDTKSSIEEIVSEMITIKSESKPK--SQLRELVTQMFINFVTLRQVNRTLLVEEDRVKAETERAKAPVDSTTLQLHNLMYEKSHYVKAIKACKDFRSKYPDIDLVPEEEFHRDAPEKIKGSKLSNDISHDLMLKRLNYELHQRKELCKLHEKLEQHKKSLQEMIANRXXXXXXXXXXXXXXXXXXXPIQSQLGVLHTKKIKQLNSAELLPPPLYVIYSQFTAQKEAFGENIDLEIVGSLKDAQA 877
            I  YE+ ++T   ++ +++E+  +KS       S++ E   Q  ++F+TL+++NR   +   + + +T  AK  VD+  LQL NL+YE  H  K I  C +F+SK+ +I+LV  EEF+ +AP +I    ++    H   L RL++EL QRK L + +++ +  K+ + + I  +                   P+Q  L +   +  KQ  +A  LPPPLYV++ Q +A  +A  + + + I GS+++A+A
Sbjct:   48 IKDYELYKETCQELQRLMAEIQELKSRGVKDNASEIDERRVQSCVHFMTLKKLNRLAHIRLKKGRDQTHEAKQKVDAYHLQLQNLLYEVMHLQKEITKCLEFKSKHEEIELVSLEEFYSEAPTEISRPDITLTEPHQQTLARLDWELEQRKRLAERYKECQTIKEKILKEIEVKKEYLSSLQPRLNSIMQASLPVQEYLFMPFDQAHKQYETARHLPPPLYVLFVQASAYGQACDKKLVVAIEGSVEEAKA 298          
BLAST of DY306215 vs. ExPASy Swiss-Prot
Match: THOC5_BOVIN (THO complex subunit 5 homolog OS=Bos taurus GN=THOC5 PE=2 SV=1)

HSP 1 Score: 128.257 bits (321), Expect = 7.435e-29
Identity = 75/248 (30.24%), Postives = 134/248 (54.03%), Query Frame = 2
Query:  140 YEMLRDTKSSIEEIVSEMITIKSESKPKS--QLRELVTQMFINFVTLRQVNRTLLVEEDRVKAETERAKAPVDSTTLQLHNLMYEKSHYVKAIKACKDFRSKYPDIDLVPEEEFHRDAPEKIKGSKLSNDISHDLMLKRLNYELHQRKELCKLHEKLEQHKKSLQEMIANRXXXXXXXXXXXXXXXXXXXPIQSQLGVLHTKKIKQLNSAELLPPPLYVIYSQFTAQKEAFGENIDLEIVGSLKDAQA 877
            YE+ + T   ++ +++E+  +KS     +  ++ +   Q  ++F+TL+++NR   +   + + +T  AK  VD+  LQL NL+YE  H  K I  C +F+SK+ +IDLV  EEF+++AP  I  ++++    H   L RL++EL QRK L + + +   +K+ + + I  +                   P+Q  L +   +  KQ  +A  LPPPLYV++ Q TA  +A  + + + I GS+ +A+A
Sbjct:   52 YELYKYTCQELQRLMAEIQDLKSRGGKDAAVEIEDRRIQSCVHFMTLKKLNRLAHIRLKKGRDQTHEAKQKVDAYHLQLQNLLYEVMHLQKEITKCLEFKSKHEEIDLVSLEEFYKEAPPDISKAEVTMGDPHQQTLARLDWELEQRKRLAEKYRECLSNKEKILKEIEVKKEYLSSLQPRLNSNMQASLPVQEYLFMPFDQAHKQYETARHLPPPLYVLFVQATAYGQACDKMLSVAIEGSVDEAKA 299          
BLAST of DY306215 vs. ExPASy Swiss-Prot
Match: THO5A_XENLA (THO complex subunit 5 homolog A OS=Xenopus laevis GN=thoc5-A PE=1 SV=1)

HSP 1 Score: 127.102 bits (318), Expect = 1.656e-28
Identity = 74/248 (29.84%), Postives = 132/248 (53.23%), Query Frame = 2
Query:  140 YEMLRDTKSSIEEIVSEMITIKSESKPKS--QLRELVTQMFINFVTLRQVNRTLLVEEDRVKAETERAKAPVDSTTLQLHNLMYEKSHYVKAIKACKDFRSKYPDIDLVPEEEFHRDAPEKIKGSKLSNDISHDLMLKRLNYELHQRKELCKLHEKLEQHKKSLQEMIANRXXXXXXXXXXXXXXXXXXXPIQSQLGVLHTKKIKQLNSAELLPPPLYVIYSQFTAQKEAFGENIDLEIVGSLKDAQA 877
            Y++ +DT   ++ ++SE+  +KS+    S  ++ E   Q  ++F+TL+++NR   +   + + +T  AK  VD+  LQL NL+YE  H  K I  C +F+SK+ +I+LV  EEF+  AP  I   ++++   H   L RL++EL QRK L + +++    K+ + + I  +                   P+Q  L +      KQ  +A  LP PLYV++ Q +A  +A    + + I G++++A+A
Sbjct:   47 YQLYKDTCLDLQRLMSEIQELKSKGSRDSALEIEEKKVQSCVHFMTLKKLNRLAHIRLKKARDQTHEAKQKVDAYHLQLQNLLYEVMHLQKEITKCLEFKSKHEEIELVSVEEFYSKAPVAISKPEITSTDPHQQTLSRLDWELEQRKRLAEKYKECLASKEKILKEIEIKKEYLNSLQPQLNSIMQASLPVQEYLSMPFDCMHKQYETARHLPAPLYVLFVQASAYSQACDRKLVVTIEGNVEEARA 294          
BLAST of DY306215 vs. ExPASy Swiss-Prot
Match: THOC5_DROME (THO complex subunit 5 OS=Drosophila melanogaster GN=thoc5 PE=1 SV=2)

HSP 1 Score: 72.7886 bits (177), Expect = 3.707e-12
Identity = 63/238 (26.47%), Postives = 108/238 (45.38%), Query Frame = 2
Query:  170 IEEIVSEMITIKSESKPKSQLRELVTQMFINFVTLRQVNRTLL--VEEDRVKAETERAKAPVDSTTLQLHNLMYEKSHYVKAIKACKDFRSKYPDIDLVPEEEFHRDAPEKIKGSKLSNDISHDLMLKRLNYELHQRKELCKLHEKLEQHKKSLQEMIANRXXXXXXXXXXXXXXXXXXXPIQSQLGVLHTKKIKQLNSAELLPPPLYVIYSQF-TAQKEAFGENIDLEIVGSLKDAQ 874
            +++ +  +   KS+ +   + R   T MF   V L+  NR +   ++  R K   E+ K  VD + LQL NL+YE SH  K I  C+ F+S+   ++L+ E E+  + P+    ++  +  SH   L RL+ EL  RK L K +  L   K+ L +   +                    P+   L +    + K     + LP PLYV++    + Q+ +  ++   E+VG   +AQ
Sbjct:   12 LQKAIEGIKEAKSKGQSTDEARIATTLMF---VALKHANREVKHKIKAGRDKLHLEKCK--VDLSRLQLQNLLYEVSHLKKEIVRCQKFKSRDTSLELLSEAEYSSELPDMPNDAEELS--SHKQHLHRLDCELRLRKALDKQYSALLSSKQELLQDNLSHAQRYVSFAPALRTLQSATKPLHDALQLSLDVEWKLSAVVKYLPKPLYVLFIVLQSLQRVSEEQSFTAEVVGYESEAQ 242          
The following BLAST results are available for this feature:
BLAST of DY306215 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 10
Match NameE-valueIdentityDescription
THOC5_XENTR5.149e-3030.24THO complex subunit 5 homolog OS=Xenopus tropicali... [more]
THO5B_XENLA5.149e-3030.24THO complex subunit 5 homolog B OS=Xenopus laevis ... [more]
THOC5_DANRE8.782e-3030.83THO complex subunit 5 homolog OS=Danio rerio GN=th... [more]
THOC5_RAT2.555e-2930.65THO complex subunit 5 homolog OS=Rattus norvegicus... [more]
THOC5_MOUSE2.555e-2930.65THO complex subunit 5 homolog OS=Mus musculus GN=T... [more]
THOC5_HUMAN4.359e-2930.65THO complex subunit 5 homolog OS=Homo sapiens GN=T... [more]
THOC5_CHICK5.693e-2930.28THO complex subunit 5 homolog OS=Gallus gallus GN=... [more]
THOC5_BOVIN7.435e-2930.24THO complex subunit 5 homolog OS=Bos taurus GN=THO... [more]
THO5A_XENLA1.656e-2829.84THO complex subunit 5 homolog A OS=Xenopus laevis ... [more]
THOC5_DROME3.707e-1226.47THO complex subunit 5 OS=Drosophila melanogaster G... [more]
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Properties
Property NameValue
Genbank descriptionIC0AAA9DF04RM1 CitNFL Citrus clementina cDNA 5, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>DY306215 ID=DY306215; Name=DY306215; organism=Citrus clementina; type=EST; length=1035bp
CCGGATTCGTTTGGAGGGAAAGTAAAAACTGAAGAGAATGGAAGACGGCG
AGATAGAAGAGGAAGGAATGGTGGTAGATGTTGACGGAGGAGGAGACGCA
CCGTTAACAAACTCGCCGAGCAAGACACAGATATCGGCTTACGAAATGCT
GAGAGACACCAAATCGTCGATTGAAGAAATCGTATCGGAGATGATAACAA
TCAAAAGCGAAAGCAAACCAAAATCTCAACTAAGAGAACTCGTCACTCAA
ATGTTTATCAATTTCGTCACTCTCCGCCAGGTGAACCGTACGCTATTAGT
AGAAGAAGACCGGGTGAAAGCCGAGACGGAACGGGCGAAGGCGCCGGTGG
ATTCCACGACTCTGCAGCTGCATAATTTGATGTATGAAAAGAGTCATTAT
GTTAAAGCAATTAAAGCGTGCAAGGACTTCAGGTCTAAATATCCTGACAT
TGATCTCGTGCCCGAAGAAGAATTTCATCGTGACGCACCAGAGAAGATTA
AAGGCTCCAAATTGTCTAATGACATCTCACATGATCTCATGCTCAAGAGG
CTCAATTATGAATTGCACCAGCGGAAAGAACTGTGCAAACTTCATGAGAA
GCTAGAACAACATAAGAAAAGTTTACAGGAGATGATTGCAAATCGGAAGA
AGTTCTTGTCGAGTCTTCCTTCACATCTTAAGTCTCTGAAGAAAGCATCG
TTGCCAATACAGAGCCAATTAGGGGTTTTGCACACAAAGAAAATAAAGCA
ACTCAACTCAGCTGAGTTACTTCCACCACCTCTCTATGTGATTTACTCAC
AGTTTACAGCACAGAAGGAAGCATTTGGTGAGAATATAGATCTAGAGATA
GTTGGAAGTTTGAAAGATGCTCAAGCTTTTGCCCGCCAACNANNGCATTA
GGACACTGGTATATCTACTAATGTTGAGAGCTCCAAGTTAGAAGAATGAT
GCACAGATGAGGAGGATGATGGGCCAGAGAGAAGAAAGCGGCCAAAGAAA
GTTCCAAGCAAAAGAGAGTCTTGACCAGGCAAGAA
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