DY306217

Overview
NameDY306217
Unique NameDY306217
TypeEST
OrganismCitrus clementina (Clementine)
Sequence length1403
Libraries
Library NameType
CitNFLcdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Alignments
Feature NameTypeLocationAnalysis
Ccv1_Contig9293 contig Ccv1_Contig9293:1..1403. BLAST: Citrus Unigene V1 Contigs to Prunus persica proteins V1
Homology
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BLAST of DY306217 vs. ExPASy Swiss-Prot
Match: RSBQ_BACSU (Sigma factor sigB regulation protein rsbQ OS=Bacillus subtilis GN=rsbQ PE=1 SV=1)

HSP 1 Score: 157.918 bits (398), Expect = 1.324e-37
Identity = 89/245 (36.33%), Postives = 139/245 (56.73%), Query Frame = 3 
Query:  189 VRVVGTGDRILVLAHGFGTDQSAWQPILP-YLNPHRVIMFDLVCAGSVNPDYFDFRRYTTLDAYVDDLLNILDTLGVNRCAYVGHSVSAMIGLLASIRRPDLFTKLILIGASPRFLND-EDYHGGFEEAEIDKVFRAMEANYEAWAYGYAPLAVG-ADVPAAVREFSPTLFNMRPDISLFVSKTVFDTDLRGIPRLVRVPCVIIPTSKDVPLPVSVPEYLPRPPGGPNPVELLKIEGHLPPLTPP 914
            V+V G+G   ++ A GFG DQS W  + P +   HRVI+FD V +G  +   +D  RY TLD Y  D+L++ + L +    +VGHSV A+IG+LASIRRP+LF+ L+++G SP +LND  +Y+GGFEE ++  +   ME NY  WA  +A   +   D P    E      +  P I+   +K  F +D R     V VP +I+  + D+  P +V +Y+ +     + ++ ++  GH P ++ P
Sbjct:   11 VKVKGSGKASIMFAPGFGCDQSVWNAVAPAFEEDHRVILFDYVGSGHSDLRAYDLNRYQTLDGYAQDVLDVCEALDLKETVFVGHSVGALIGMLASIRRPELFSHLVMVGPSPCYLNDPPEYYGGFEEEQLLGLLEMMEKNYIGWATVFAATVLNQPDRPEIKEELESRFCSTDPVIARQFAKAAFFSDHREDLSKVTVPSLILQCADDIIAPATVGKYMHQHL-PYSSLKQMEARGHCPHMSHP 254
The following BLAST results are available for this feature:
BLAST of DY306217 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 1
Match NameE-valueIdentityDescription
RSBQ_BACSU1.324e-3736.33Sigma factor sigB regulation protein rsbQ OS=Bacil... [more]
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Properties
Property NameValue
Genbank descriptionKN0AAQ11YN20RM1 CitNFL Citrus clementina cDNA 5, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>DY306217 ID=DY306217; Name=DY306217; organism=Citrus clementina; type=EST; length=1403bp
CGGCTTTACGTGCACTACTAGACACGCTTTGNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNCTCCACCCTTCTCACCTTCCTAGATAAAC
CGCAAATAGTGATTTTTCCTTTTTTTAAAAGATTTTTTTGAAGTTTGCTC
CGATAAATCCCATGGGTGACCTGTTAGAAGCCCTCCCCGTCCGTGTAGTA
GGTACCGGCGACCGAATTCTGGTACTTGCACATGGATTTGGCACTGACCA
ATCCGCTTGGCAGCCCATTCTCCCTTATTTAAACCCTCACCGGGTGATCA
TGTTCGATCTTGTTTGCGCCGGCAGTGTCAATCCTGATTATTTCGATTTC
AGGAGGTACACAACTCTTGATGCCTACGTTGACGATTTGCTCAACATTCT
AGACACCCTTGGCGTCAACCGCTGCGCCTACGTTGGCCACTCTGTCTCCG
CCATGATCGGGCTCTTGGCCTCCATTCGCCGCCCTGACCTCTTCACCAAG
CTCATCCTCATCGGTGCTTCTCCAAGGTTCTTGAACGACGAAGATTATCA
CGGGGGATTTGAGGAAGCTGAAATTGACAAAGTGTTTAGGGCAATGGAGG
CGAATTATGAGGCATGGGCGTACGGGTATGCACCACTAGCAGTGGGAGCA
GATGTGCCGGCAGCTGTGAGAGAATTTAGCCCGACCTTATTCAACATGAG
GCCGGACATATCACTATTTGTTTCAAAAACCGTATTTGACACGGACCTGA
GGGGGATACCACGCCTAGTCCGGGTGCCCTGTGTTATAATTCCGACCTCC
AAAGACGTCCCCCTCCCGGTCTCCGTCCCTGAATACCTTCCGAGACCTCC
GGGCGGCCCGAACCCCGTTGAGCTTTTGAAGATTGAAGGTCATTTGCCGC
CTTTGACCCCCCCGCTATCCTGGGTCCCCTCCCCCCGCCAAGCCCTCCCA
GATAATAATTCCTTAAACCCCCAAGTGGGGCCCCGCCCCCGAACAACTCG
CCGGACCAAACGGCTTTGGACCCCGGGAATATTACTAGTTTTCAATCACC
CCCTCCCCAAGGACACCCGCTCCCCTGCGGATCCACGCCTGCAACACCCG
CCCCATCTTCTTTTTCAGTTTTCTATTTTCTCACTCAACACAGCAACCAT
CTTTACTATTCTCTCCCCCCCACCACCAAGACCTCCCCAGACACGCCGCC
GCTCCTCCCCATGCTCTCCTCCCCTGTCCCACGCCCACCAACTCCCTGCC
CCACCACGCCAATACTCACAAAATGCACCTCCTACACCCCCTCGCTCCCC
GACACCGCCCTCCACCATCCACCACCCCCGCTCGGGCGACCGCCCCAACC
GCCACCACGGCCCACAGATCACTACCCCCTCGCTCGCCCGCCTCGGCCCA
CAC
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