DY306218

Overview
NameDY306218
Unique NameDY306218
TypeEST
OrganismCitrus clementina (Clementine)
Sequence length1276
Libraries
Library NameType
CitNFLcdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of DY306218 vs. ExPASy Swiss-Prot
Match: SPHK2_MOUSE (Sphingosine kinase 2 OS=Mus musculus GN=Sphk2 PE=1 SV=2)

HSP 1 Score: 117.472 bits (293), Expect = 1.756e-25
Identity = 52/104 (50.00%), Postives = 79/104 (75.96%), Query Frame = 2
Query:  422 RPKRLYIFVNPFGGKKIASKIFLDDVKPLLEDANIQFTVQETTQQLHAKEIVKGLDLSKYDGIVCVSGDGILVEVVNGLLEREDWNDAIKVPLGVVPAXTGNGM 733
            R  RL I VNPFGG+ +A +  +D V P++ +A + F + +T +Q HA+E+V+GL LS+++GIV VSGDG+L EV+NGLL+R DW DA+++P+GV+P  +GN +
Sbjct:  144 RKPRLLILVNPFGGRGLAWQRCMDHVVPMISEAGLSFNLIQTERQNHARELVQGLSLSEWEGIVTVSGDGLLYEVLNGLLDRPDWEDAVRMPIGVLPCGSGNAL 247          
BLAST of DY306218 vs. ExPASy Swiss-Prot
Match: SPHK2_HUMAN (Sphingosine kinase 2 OS=Homo sapiens GN=SPHK2 PE=1 SV=2)

HSP 1 Score: 116.701 bits (291), Expect = 2.995e-25
Identity = 52/108 (48.15%), Postives = 80/108 (74.07%), Query Frame = 2
Query:  410 DSFGRPKRLYIFVNPFGGKKIASKIFLDDVKPLLEDANIQFTVQETTQQLHAKEIVKGLDLSKYDGIVCVSGDGILVEVVNGLLEREDWNDAIKVPLGVVPAXTGNGM 733
            D   RP RL + VNPFGG+ +A +   + V P++ +A + F + +T +Q HA+E+V+GL LS++DGIV VSGDG+L EV+NGLL+R DW +A+K+P+G++P  +GN +
Sbjct:  175 DLLPRPPRLLLLVNPFGGRGLAWQWCKNHVLPMISEAGLSFNLIQTERQNHARELVQGLSLSEWDGIVTVSGDGLLHEVLNGLLDRPDWEEAVKMPVGILPCGSGNAL 282          
BLAST of DY306218 vs. ExPASy Swiss-Prot
Match: SPHK1_HUMAN (Sphingosine kinase 1 OS=Homo sapiens GN=SPHK1 PE=1 SV=1)

HSP 1 Score: 104.76 bits (260), Expect = 1.178e-21
Identity = 51/113 (45.13%), Postives = 76/113 (67.26%), Query Frame = 2
Query:  422 RPKRLYIFVNPFGGKKIASKIFLDDVKPLLEDANIQFTVQETTQQLHAKEIVKGLDLSKYDGIVCVSGDGILVEVVNGLLEREDWNDAIKVPLGVVPAXTGNGMIQSLLDLVG 760
            RP R+ + +NP GGK  A ++F   V+PLL +A I FT+  T ++ HA+E+V+  +L ++D +V +SGDG++ EVVNGL+ER DW  AI+ PL  +PA +GN +  SL    G
Sbjct:   13 RPCRVLVLLNPRGGKGKALQLFRSHVQPLLAEAEISFTLMLTERRNHARELVRSEELGRWDALVVMSGDGLMHEVVNGLMERPDWETAIQKPLCSLPAGSGNALAASLNHYAG 125          
BLAST of DY306218 vs. ExPASy Swiss-Prot
Match: SPHK1_RAT (Sphingosine kinase 1 OS=Rattus norvegicus GN=Sphk1 PE=1 SV=1)

HSP 1 Score: 101.293 bits (251), Expect = 1.302e-20
Identity = 49/108 (45.37%), Postives = 71/108 (65.74%), Query Frame = 2
Query:  422 RPKRLYIFVNPFGGKKIASKIFLDDVKPLLEDANIQFTVQETTQQLHAKEIVKGLDLSKYDGIVCVSGDGILVEVVNGLLEREDWNDAIKVPLGVVPAXTGNGMIQSL 745
            RP R+ + +NP GGK  A K+F   V+PLLE+A + F +  T +Q HA+E+V   +L  +D +  +SGDG++ EVVNGL+ER DW  AI+ PL  +P  +GN +  SL
Sbjct:   13 RPCRVLVLLNPRGGKGKALKLFQSRVRPLLEEAEVSFKLMLTERQNHARELVCAEELGHWDALAVMSGDGLMHEVVNGLMERPDWESAIQKPLCSLPGGSGNALAASL 120          
BLAST of DY306218 vs. ExPASy Swiss-Prot
Match: SPHKB_DICDI (Sphingosine kinase B OS=Dictyostelium discoideum GN=sgkB PE=2 SV=1)

HSP 1 Score: 99.7525 bits (247), Expect = 3.789e-20
Identity = 58/142 (40.85%), Postives = 87/142 (61.27%), Query Frame = 2
Query:  335 RKDFVFQPLS-EDSKRLWCEKLRDFIDSF--GRPK--RLYIFVNPFGGKKIASKIFLDDVKPLLEDANIQFTVQETTQQLHAKEIVKGLDLSKYDGIVCVSGDGILVEVVNGLLEREDWNDAIKVPLGVVPAXTGNGMIQSL 745
            RK + FQ  S +DS   +      F++S   G PK  ++ I +NP  GKK +  IF  +V+ L +D+ I+  +  T +  HAK+I    ++ KYD +V +SGDG+L E +NGLL RED+ DA K+PL ++PA TGNG+  S+
Sbjct:  214 RKSYTFQFKSNQDSLNFYSNIQSTFLNSLPRGNPKNRKIRILINPKSGKKESHNIF-KEVEQLFKDSGIKMKLTVTMEPEHAKKIGFKSNIYKYDTVVFISGDGLLHEFINGLLSREDYEDAKKIPLALIPAGTGNGLANSI 354          
BLAST of DY306218 vs. ExPASy Swiss-Prot
Match: SPHKA_DICDI (Sphingosine kinase A OS=Dictyostelium discoideum GN=sgkA PE=2 SV=2)

HSP 1 Score: 85.8853 bits (211), Expect = 7.254e-20
Identity = 45/108 (41.67%), Postives = 65/108 (60.19%), Query Frame = 2
Query:  422 RPKRLYIFVNPFGGKKIASKIFLDDVKPLLEDANIQFTVQETTQQLHAKEIVKGLDLSKYDGIVCVSGDGILVEVVNGLLEREDWNDAIKVPLGVVPAXTGNGMIQSL 745
            R +R+ + +NP  GKK++  IF  D+  L +D+ I      T    HAK+I    +L KYD IV +SGDG+  E +NGLL R D+  A K+PL ++P  TGNG+  S+
Sbjct:  179 RERRIRVILNPKSGKKMSDSIF-KDINELFKDSKIFVKKTVTKGPDHAKKIGYKFNLKKYDTIVFISGDGLFHEFINGLLSRTDFEQARKIPLALIPGGTGNGIACSI 285          

HSP 2 Score: 33.113 bits (74), Expect = 7.254e-20
Identity = 20/52 (38.46%), Postives = 29/52 (55.77%), Query Frame = 1
Query:  787 LAVIPGHKRPLDVTTLLPGQTPIPNVPMPAGGPVAHLVIESEKYKWNGNAPL 942
            LAVI G  +PLDV+ +  G     ++     G V+ + IESEKY+  G+  L
Sbjct:  295 LAVIRGFTKPLDVSVIQQGDKKWCSILSLTWGIVSDVDIESEKYRALGDVRL 346          
BLAST of DY306218 vs. ExPASy Swiss-Prot
Match: SPHK1_MOUSE (Sphingosine kinase 1 OS=Mus musculus GN=Sphk1 PE=1 SV=1)

HSP 1 Score: 93.9745 bits (232), Expect = 2.079e-18
Identity = 47/113 (41.59%), Postives = 71/113 (62.83%), Query Frame = 2
Query:  422 RPKRLYIFVNPFGGKKIASKIFLDDVKPLLEDANIQFTVQETTQQLHAKEIVKGLDLSKYDGIVCVSGDGILVEVVNGLLEREDWNDAIKVPLGVVPAXTGNGMIQSLLDLVG 760
            RP R+ + +NP GGK  A ++F   V+P LE+A I F +  T ++ HA+E+V   +L  +D +  +SGDG++ EVVNGL+ER DW  AI+ PL  +P  +GN +  S+    G
Sbjct:   13 RPCRVLVLLNPQGGKGKALQLFQSRVQPFLEEAEITFKLILTERKNHARELVCAEELGHWDALAVMSGDGLMHEVVNGLMERPDWETAIQKPLCSLPGGSGNALAASVNHYAG 125          
BLAST of DY306218 vs. ExPASy Swiss-Prot
Match: LCB4_SCHPO (Sphingoid long chain base kinase 4 OS=Schizosaccharomyces pombe GN=lcb4 PE=2 SV=1)

HSP 1 Score: 91.6633 bits (226), Expect = 1.032e-17
Identity = 47/116 (40.52%), Postives = 70/116 (60.34%), Query Frame = 2
Query:  383 WCEKLRDFI-DSFGRPKRLYIFVNPFGGKKIASKIFLDDVKPLLEDANIQFTVQETTQQLHAKEIVKGLDLSKYDGIVCVSGDGILVEVVNGLLEREDWNDAIKVPLGVVPAXTGN 727
            +CE L D       R +R  +F+NP GGK  A  I+  + +P+   A+    V  T ++ HAK I K LD+  YDGI+ V GDG+  EV+NGL ER+D+ +A K+P+ ++P  +GN
Sbjct:   90 FCEYLLDVAYKGIKRSRRFIVFINPHGGKGKAKHIWESEAEPVFSSAHSICEVVLTRRKDHAKSIAKNLDVGSYDGILSVGGDGLFHEVINGLGERDDYLEAFKLPVCMIPGGSGN 205          
BLAST of DY306218 vs. ExPASy Swiss-Prot
Match: LCBK1_ARATH (Sphingoid long-chain bases kinase 1 OS=Arabidopsis thaliana GN=LCBK1 PE=1 SV=1)

HSP 1 Score: 85.1149 bits (209), Expect = 9.658e-16
Identity = 42/118 (35.59%), Postives = 77/118 (65.25%), Query Frame = 2
Query:  431 RLYIFVNPFGGKKIASKIFLDDVKPLLEDANIQFTVQETTQQLHAKEIVKGLDLSKY-DGIVCVSGDGILVEVVNGLLEREDWNDAIKVPLGVVPAXTGNGMIQSLLDLVGEPCKASM 781
            ++ + +NP  G   + K+F + V+P+ + A I+  V +TT+  HA+E+   +D++   DGI+CV GDGI+ EV+NGLL R +  + + +P+G+VPA + N ++ ++L  V +P  A++
Sbjct:  249 KMLVILNPRSGHGRSIKVFHNVVEPIFKLAGIKMEVVKTTKAGHARELASTVDINLCSDGIICVGGDGIINEVLNGLLTRSNPKEGVSIPIGIVPAGSDNSLVWTVLG-VRDPISAAL 365          
BLAST of DY306218 vs. ExPASy Swiss-Prot
Match: LCB4_YEAST (Sphingoid long chain base kinase 4 OS=Saccharomyces cerevisiae GN=LCB4 PE=1 SV=1)

HSP 1 Score: 85.1149 bits (209), Expect = 9.658e-16
Identity = 45/116 (38.79%), Postives = 65/116 (56.03%), Query Frame = 2
Query:  389 EKLRDFIDSFGRPKRLYIFVNPFGGKKIASKIFLDDVKPLLEDANIQFTVQETTQQLHAKEIVKGLDLSKYDGIVCVSGDGILVEVVNGLLEREDWNDAI-KVPLGVVPAXTGNGM 733
            E L    ++  R + + + +NP GGK  A  +FL   +P+L ++  +  +  T    HA +I K LD+SKYD I C SGDGI  EV+NGL  R D  DA  K+ +  +P  +GN M
Sbjct:  214 EILEKSYENSKRNRSILVIINPHGGKGTAKNLFLTKARPILVESGCKIEIAYTKYARHAIDIAKDLDISKYDTIACASGDGIPYEVINGLYRRPDRVDAFNKLAVTQLPCGSGNAM 329          
The following BLAST results are available for this feature:
BLAST of DY306218 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 13
Match NameE-valueIdentityDescription
SPHK2_MOUSE1.756e-2550.00Sphingosine kinase 2 OS=Mus musculus GN=Sphk2 PE=1... [more]
SPHK2_HUMAN2.995e-2548.15Sphingosine kinase 2 OS=Homo sapiens GN=SPHK2 PE=1... [more]
SPHK1_HUMAN1.178e-2145.13Sphingosine kinase 1 OS=Homo sapiens GN=SPHK1 PE=1... [more]
SPHK1_RAT1.302e-2045.37Sphingosine kinase 1 OS=Rattus norvegicus GN=Sphk1... [more]
SPHKB_DICDI3.789e-2040.85Sphingosine kinase B OS=Dictyostelium discoideum G... [more]
SPHKA_DICDI7.254e-2041.67Sphingosine kinase A OS=Dictyostelium discoideum G... [more]
SPHK1_MOUSE2.079e-1841.59Sphingosine kinase 1 OS=Mus musculus GN=Sphk1 PE=1... [more]
LCB4_SCHPO1.032e-1740.52Sphingoid long chain base kinase 4 OS=Schizosaccha... [more]
LCBK1_ARATH9.658e-1635.59Sphingoid long-chain bases kinase 1 OS=Arabidopsis... [more]
LCB4_YEAST9.658e-1638.79Sphingoid long chain base kinase 4 OS=Saccharomyce... [more]

Pages

back to top
Properties
Property NameValue
Genbank descriptionKN0AAQ11YO19RM1 CitNFL Citrus clementina cDNA 5, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>DY306218 ID=DY306218; Name=DY306218; organism=Citrus clementina; type=EST; length=1276bp
TCCAAGCCTCCGAAAAGAATACCAATTTTAAAATAAAATGATCCTAAACC
CCCCATAAAATCCAAGCCCCAAACCGAACCGAACTCCTTTTCCCCTTCCC
CTGGATCCAATAGTTCCAGACCTACCATCCGACCGGGTCCGTGTTAGCGG
CGGGATAACCGCCATGACGTTGACTGGAGACGGGAGGCCTCGGTGGACGG
ATGGACCCTCACGGAGTTTGACTCTGGAGAAGCAGGTTCTCGGTTTTGTT
GTGGAGGGTAATAAAATCAGAATCAGGGCGGTTGTTGATGGAAGAGATGA
AATCTGCTGCGGCGGGAGCGCGGGAAGCATCGTGAGGAAAGATTTTGTTT
TCCAGCCTTTGTCTGAGGATTCTAAAAGACTCTGGTGCGAAAAACTTCGT
GATTTTATTGATTCTTTTGGTCGTCCGAAGAGGCTATACATTTTTGTGAA
TCCATTTGGTGGGAAGAAAATTGCGTCCAAGATTTTTCTTGATGATGTGA
AACCACTCTTGGAGGATGCCAACATCCAATTTACAGTGCAAGAAACTACG
CAACAACTGCATGCCAAGGAGATTGTCAAAGGGCTGGATCTTTCCAAGTA
TGATGGCATAGTTTGTGTCAGTGGTGATGGTATACTTGTTGAGGTAGTGA
ATGGACTACTTGAGAGAGAGGATTGGAATGATGCAATTAAAGTGCCCCTT
GGAGTGGTTCCTGCANGCACGGGAAATGGCATGATCCAATCCCTACTGGA
TTTGGTTGGTGAACCGTGTAAAGCTTCCATGCCCTTCTAGCTGTTATTCC
AGGTCATAAGCGTCCTCTAGATGTAACTACCCTCCTGCCAGGGCAGACCC
CGATCCCAAATGTCCCGATGCCTGCCGGGGGCCCTGTGGCCCACCTTGTT
ATTGAGTCCGAAAAATATAAATGGAATGGGAATGCCCCCCTTGAATTCCC
AGCCCCTCCCAGGGAAATGTACCCGAGGCCATAAACCCCACCGGTTTCCT
TTGTGCCCGCCCCCGGCCTTAAAAAACCCCCGGAACCCCCCCCCTCTATG
GGAACAAAAATCCCCCCCCCCCCTCCCCCCCCCCCCCCCCCCCCCCTAAA
ATTTGCCCCCCCGGCCCCCCGCGCCCCCCGGTTTTTTTTTTAAAAAAACC
CCAAAGGGGGAAAAAAATTATGGGCCCCCTTTTTTTGTGCCGTGGTGCTG
CCTCCCAACATATACCCGCGGCCGGCCGCCCCCCCAAACACCCCCCCCCC
CCCCCGCCCCCCCCCCCCCCCCCCCC
back to top