DY306220

Overview
NameDY306220
Unique NameDY306220
TypeEST
OrganismCitrus clementina (Clementine)
Sequence length1320
Libraries
Library NameType
CitNFLcdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of DY306220 vs. ExPASy Swiss-Prot
Match: TPP2_ARATH (Probable thylakoidal processing peptidase 2, chloroplastic OS=Arabidopsis thaliana GN=TPP2 PE=2 SV=1)

HSP 1 Score: 114.775 bits (286), Expect = 7.545e-31
Identity = 77/203 (37.93%), Postives = 113/203 (55.67%), Query Frame = 1
Query:  280 MALRVTVNFSGYVAQNLAHSAGIRFGFSTTSTRSFHECLFRPRVFCHSKKTDL-DPPPN---YQPKANYRC-------NTLAAEIFGDGACNSPILMGLVSLMKSTAGMPGPSATSMGVFGISPFKAASIIPFLQGSKWLPCNEPGTV-PESDYVDKGGTT--D*IQFSGSENLNGVSLQLKTSGSWLSKLLNVCSE*CQAPF 846
            MA+RVT  +S YVA+++A SAG R G  T   RS  E   RPR   H++  D+ D  P    + P +  R        +T+A EI  +G C SP+++G++SLM  T     P  + M   GISPFK +S+IPFL+GSKW+PC+ P T+  +   VD+GG      ++   S+ ++           W++KLLN+CSE  +A F
Sbjct:    1 MAIRVTFTYSSYVARSIASSAGTRVG--TGDVRSCFETWVRPRFCGHNQIPDIVDKSPGSNTWGPSSGPRARPASSMYSTIAREILEEG-CKSPLVLGMISLMNLTGA---PQFSGMTGLGISPFKTSSVIPFLRGSKWMPCSIPATLSTDIAEVDRGGKVCDPKVKLELSDKVS------NGGNGWVNKLLNICSEDAKAAF 191          

HSP 2 Score: 41.2022 bits (95), Expect = 7.545e-31
Identity = 24/52 (46.15%), Postives = 32/52 (61.54%), Query Frame = 2
Query:  830 DARPPFTALTVSFLFQSFLADPQILPLGLPRTPPRNVGHGNLAEKVFQTFSK 985
            DA+  FTA+TVS LF+S LA+P+ +P      P  +VG   +AEKV   F K
Sbjct:  186 DAKAAFTAVTVSLLFRSALAEPKSIP-STSMLPTLDVGDRVIAEKVSYFFRK 236          
BLAST of DY306220 vs. ExPASy Swiss-Prot
Match: TPP1_ARATH (Thylakoidal processing peptidase 1, chloroplastic OS=Arabidopsis thaliana GN=TPP1 PE=2 SV=2)

HSP 1 Score: 112.079 bits (279), Expect = 3.042e-29
Identity = 79/189 (41.80%), Postives = 107/189 (56.61%), Query Frame = 1
Query:  280 MALRVTVNFSGYVAQNLAHSAGIRFGFSTTSTRSFHECLFRPRVFCHSKKTDLDPPPNYQPKANYRCNTLAAEIFGDGACNSPILMGLVSLMKSTAGMPGPSATSMGVFGISPFKAASIIPFLQGSKWLPCNEPGTVPESDYVDKGGTTD*IQFSGSENLNGVSLQLKTSGSWLSKLLNVCSE*CQAPF 846
            MA+R+T  +S +VA+NL    G R G          E L RPR F H  K D D  P  +P + Y   ++A E+ G+G+  SP++MGL+S++KST G     +++M V G+S FKA+SIIPFLQGSKW+        P  D VDKGGT         E+ NG S        W++KLL+VCSE  +A F
Sbjct:    1 MAIRITFTYSTHVARNLV---GTRVGPGGYC----FESLVRPRFFSH--KRDFDRSPRNRPASMY--GSIARELIGEGS-QSPLVMGLISILKSTTGH---ESSTMNVLGVSSFKASSIIPFLQGSKWIK-----NPPVIDDVDKGGTVC-DDDDDKESRNGGS-------GWVNKLLSVCSEDAKAAF 161          

HSP 2 Score: 38.5058 bits (88), Expect = 3.042e-29
Identity = 23/52 (44.23%), Postives = 31/52 (59.62%), Query Frame = 2
Query:  830 DARPPFTALTVSFLFQSFLADPQILPLGLPRTPPRNVGHGNLAEKVFQTFSK 985
            DA+  FTA+TVS LF+S LA+P+ +P      P  + G   +AEKV   F K
Sbjct:  156 DAKAAFTAVTVSILFRSALAEPKSIP-STSMYPTLDKGDRVMAEKVSYFFRK 206          
The following BLAST results are available for this feature:
BLAST of DY306220 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 2
Match NameE-valueIdentityDescription
TPP2_ARATH7.545e-3137.93Probable thylakoidal processing peptidase 2, chlor... [more]
TPP1_ARATH3.042e-2941.80Thylakoidal processing peptidase 1, chloroplastic ... [more]
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Properties
Property NameValue
Genbank descriptionKN0AAQ3YC11RM1 CitNFL Citrus clementina cDNA 5, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>DY306220 ID=DY306220; Name=DY306220; organism=Citrus clementina; type=EST; length=1320bp
ATTTGGTTTCGAGTGTAGCTCCATCTCTCTGCCTCCCAGAGAGAAGCAAA
GCATAAAACAAAAGCTCGTAAATTTGAGCGCTGATTTTCTCCAAAAAGCA
GTCTCACATCGGCATCCGGTTTTACACTCTAAGCCTCAATTCAACCTTTC
CGCTTCCGACTCACTGAATCAGCCCGTGACGATGTCGTTTATCAGCTTCT
AGATCTCCTCCGATCAACCCTTTTAATCTCCGAAAGCGCAATTCAACTAA
TCCTCCTCAAGCTATTCAAAATCGCAAACATGGCGTTACGTGTCACCGTC
AACTTCTCCGGTTACGTCGCTCAAAACCTCGCCCACTCCGCCGGAATCCG
CTTCGGCTTCTCCACCACCTCCACTCGCTCCTTCCACGAATGCTTGTTTC
GCCCTCGAGTCTTCTGCCATAGCAAAAAAACCGACCTTGATCCGCCCCCA
AATTATCAGCCCAAAGCAAATTACCGATGTAACACACTCGCCGCCGAAAT
ATTCGGTGACGGCGCTTGCAACAGTCCGATCCTGATGGGATTGGTCTCGT
TGATGAAGTCAACGGCTGGTATGCCCGGTCCTTCGGCAACCTCCATGGGT
GTCTTTGGGATTTCACCGTTTAAAGCCGCTTCGATTATTCCCTTTCTACA
GGGATCGAAGTGGCTTCCCTGTAACGAGCCGGGCACCGTTCCGGAGAGTG
ATTACGTGGATAAAGGAGGGACTACTGATTAAATACAGTTTAGTGGGAGT
GAAAATCTGAATGGTGTAAGCTTGCAGTTGAAAACCAGCGGAAGTTGGTT
ATCCAAGTTGTTGAATGTATGTTCCGAATGATGCCAGGCCCCCTTTTACG
GCTTTGACTGTTAGTTTCCTGTTCCAGTCCTTTTTGGCCGACCCCCAAAT
CCTTCCCCTCGGCCTTCCAAGAACCCCCCCCCGGAATGTTGGGCACGGAA
ATTTGGCCGAAAAAGTTTTCCAAACTTTTTCCAAAACGCCCAAGGGTAAT
CGCAAATTTTTGTTCTTTTTAGCGCCACCTCCCCATCCTTGACTGGAAAA
TCGAGTTTTCATATCCGCGGCGGATCTTTTCACATTATCAAGGGGAAATG
GGGCCCTAGGGACNTGCGGAATCTTCCCTCCCAAAGCATTAAGGTCCGGC
GGGACCACGCCCCCCGTGTAATAATCCAGATCCTACCGCTCCCTGTGCTA
AGTAAACGACACTCCCTTCAACCTCCCTGTACATCAGATCCCCGCTGCCC
CACACTTTCATCGACGACCGAAACACACCAGGCCACAATGTGCCTGTGTG
GTATTTCCTTAGTTTGACCA
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