DY306221

Overview
NameDY306221
Unique NameDY306221
TypeEST
OrganismCitrus clementina (Clementine)
Sequence length1002
Libraries
Library NameType
CitNFLcdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Alignments
Feature NameTypeLocationAnalysis
Ccv1_Contig9294 contig Ccv1_Contig9294:1..1001. BLAST: Citrus Unigene V1 Contigs to Prunus persica proteins V1
Homology
BLAST of DY306221 vs. ExPASy Swiss-Prot
Match: BRXL4_ARATH (Protein Brevis radix-like 4 OS=Arabidopsis thaliana GN=BRXL4 PE=2 SV=1)

HSP 1 Score: 137.887 bits (346), Expect = 6.680e-43
Identity = 89/170 (52.35%), Postives = 99/170 (58.24%), Query Frame = 1
Query:  421 MLTCIARSKQPGDDSLSQPEXXXXXXXXXXXKQQAIKSLTSQLKDMALKASGAYRHCSPCTA---PGAAQSRLKSNSGESDADSD-----RF---------XXXXXXXXXXXXXXXXXXWGKEMEARLKGISKSSGEATPIKSVSGR-RVDPVVFIEKNEPKEWVAXVEP 876
            MLTCIARSK+ GD+S  QP+             +  KSLTSQLKDMALKASGAYRHC+PCTA    G  Q  +K+N   S   SD     RF                           WGKEMEARLKGI  SSGEATP KS SGR RVDP+VF+E+ EPKEWVA VEP
Sbjct:    1 MLTCIARSKRAGDESSGQPDDPD---------SKNAKSLTSQLKDMALKASGAYRHCTPCTAAQGQGQGQGPIKNNPSSSSVKSDFESDQRFKMLYGRSNSSITATAAVAATQQQQPRVWGKEMEARLKGI--SSGEATP-KSASGRNRVDPIVFVEEKEPKEWVAQVEP 158          

HSP 2 Score: 58.9214 bits (141), Expect = 6.680e-43
Identity = 28/42 (66.67%), Postives = 29/42 (69.05%), Query Frame = 2
Query:  875 PGVLITFVPLPPGSHDLKRIPFRPDMFKKWQAPRWWGRNPQK 1000
            PGVLITFV LP G +DLKRI F  DMF K QA RWW  N  K
Sbjct:  158 PGVLITFVSLPGGGNDLKRIRFSRDMFNKLQAQRWWADNYDK 199          
BLAST of DY306221 vs. ExPASy Swiss-Prot
Match: BRXL3_ARATH (Protein Brevis radix-like 3 OS=Arabidopsis thaliana GN=BRXL3 PE=2 SV=1)

HSP 1 Score: 107.842 bits (268), Expect = 2.653e-31
Identity = 68/154 (44.16%), Postives = 84/154 (54.55%), Query Frame = 1
Query:  421 MLTCIARSKQ--PGDDSLSQPEXXXXXXXXXXXKQQAIKSLTSQLKDMALKASGAYRHCSPCTAPGAAQSRLKSNSGESDADSDRFXXXXXXXXXXXXXXXXXXWGKEMEARLKGISKSSGEATPIKSVSGRRVDPVVFIEKNEPKEWVAXVEP 876
            MLTCIA +KQ    +   ++ E            +QAIKSLTSQLKDMA+KASGAY++C PC+  G        N  +SDA SD                    WG EME+RLKGIS   G  T   S+SG R + +VF+E +E KEWVA VEP
Sbjct:    1 MLTCIACTKQLNTNNGGSTREEDEEHGVIGTPRTKQAIKSLTSQLKDMAVKASGAYKNCKPCS--GTTNRNQNRNYADSDAASDSGRFHYSYQRAGTATSTPKIWGNEMESRLKGISSEEGTPT---SMSG-RTESIVFMEDDEVKEWVAQVEP 148          

HSP 2 Score: 50.0618 bits (118), Expect = 2.653e-31
Identity = 28/68 (41.18%), Postives = 32/68 (47.06%), Query Frame = 2
Query:  875 PGVLITFVPLPPGSHDLKRIPFRP--------------------------DMFKKWQAPRWWGRNPQK 1000
            PGVLITFV LP G +DLKRI FR                           +MF KWQA +WW  N +K
Sbjct:  148 PGVLITFVSLPQGGNDLKRIRFRSTRFPYYRDQLLLWCRQGWVFWPQNCREMFNKWQAQKWWVENFEK 215          
BLAST of DY306221 vs. ExPASy Swiss-Prot
Match: BRXL2_ARATH (Protein Brevis radix-like 2 OS=Arabidopsis thaliana GN=BRXL2 PE=2 SV=1)

HSP 1 Score: 92.8189 bits (229), Expect = 4.840e-30
Identity = 62/156 (39.74%), Postives = 81/156 (51.92%), Query Frame = 1
Query:  421 MLTCIARSKQ----PGDDSLSQPEXXXXXXXXXXXKQQAIKSLTSQLKDMALKASGAYRHCSPCTAPGAAQSRLKSNSGESDADSDRFXXXXXXXXXXXXXXXXXXWGKEMEARLKGISKSSGEATPIKSVSGRRVDPVVFIEKNEPKEWVAXVEP 876
            MLTCIA +KQ     G     + +           + + IKSLTSQ+KDMA+KASGAY+ C PC+  G++      +  +SD  S+                     GKEME+RLKG    SGE TP +S+SGR    V   E++E KEWVA VEP
Sbjct:    1 MLTCIACTKQLNTNNGGSKKQEEDEEEEDRVIETPRSKQIKSLTSQIKDMAVKASGAYKSCKPCS--GSSNQNKNRSYADSDVASNSGRFRYAYKRAGSGSSTPKILGKEMESRLKGF--LSGEGTP-ESMSGRTESTVFMEEEDELKEWVAQVEP 151          

HSP 2 Score: 60.8474 bits (146), Expect = 4.840e-30
Identity = 26/42 (61.90%), Postives = 30/42 (71.43%), Query Frame = 2
Query:  875 PGVLITFVPLPPGSHDLKRIPFRPDMFKKWQAPRWWGRNPQK 1000
            PGVLITFV LP G +D+KRI F  +MF KWQA +WW  N  K
Sbjct:  151 PGVLITFVSLPEGGNDMKRIRFSREMFDKWQAQKWWAENFDK 192          
BLAST of DY306221 vs. ExPASy Swiss-Prot
Match: BRXL1_ORYSJ (Protein Brevis radix-like 1 OS=Oryza sativa subsp. japonica GN=BRXL1 PE=2 SV=1)

HSP 1 Score: 72.0182 bits (175), Expect = 4.359e-24
Identity = 57/167 (34.13%), Postives = 71/167 (42.51%), Query Frame = 1
Query:  421 MLTCIARSKQ----------PGDDSLSQPEXXXXXXXXXXXKQQAIKSLTSQLKDMALKASGAYRHCSPC-----TAPGAAQSRLKSNSGESDADSDRFXXXXXXXXXXXXXXXXXXWGKEMEARLKGISKSSGEATPIKSVSGRRVDPVVFIEKNEPKEWVAXVEP 876
            MLTCIA SKQ            DD+                 +QAIK+LT+Q+KDMALKASGAYRHC PC     ++P A   R       +D+ SDRF                      + AR   ++    E    +   G   D     E +E KEWVA VEP
Sbjct:    1 MLTCIACSKQLAGGAPPLREQSDDADDAAVARGAGECATPSTRQAIKALTAQIKDMALKASGAYRHCKPCAGSSSSSPAAGARRHHPYHAYADSGSDRFHYAYRRAGSGGDAT------PSVSARTDFLAGDEEEEEEEEEEEGTTADG---SEDDEAKEWVAQVEP 158          

HSP 2 Score: 61.6178 bits (148), Expect = 4.359e-24
Identity = 26/42 (61.90%), Postives = 31/42 (73.81%), Query Frame = 2
Query:  875 PGVLITFVPLPPGSHDLKRIPFRPDMFKKWQAPRWWGRNPQK 1000
            PGVLITF+ LP G +DLKRI F  ++F KWQA RWW  N +K
Sbjct:  158 PGVLITFLSLPEGGNDLKRIRFSREIFNKWQAQRWWAENYEK 199          
BLAST of DY306221 vs. ExPASy Swiss-Prot
Match: BRX_ARATH (Protein BREVIS RADIX OS=Arabidopsis thaliana GN=BRX PE=1 SV=2)

HSP 1 Score: 61.2326 bits (147), Expect = 1.527e-20
Identity = 27/42 (64.29%), Postives = 29/42 (69.05%), Query Frame = 2
Query:  875 PGVLITFVPLPPGSHDLKRIPFRPDMFKKWQAPRWWGRNPQK 1000
            PGV ITF  LP G +DLKRI F  +MF KWQA RWWG N  K
Sbjct:  147 PGVHITFASLPTGGNDLKRIRFSREMFDKWQAQRWWGENYDK 188          

HSP 2 Score: 60.4622 bits (145), Expect = 1.527e-20
Identity = 49/161 (30.43%), Postives = 70/161 (43.48%), Query Frame = 1
Query:  421 MLTCIARSKQPGDDSLSQPEXXXXXXXXXXXKQQAIKSLTSQLKDMALKASGAYRHCSPCTAPGAAQSRLKSNSGESDADSDRFXXXXXXXXXXXXXXXXXXW---------GKEMEARLKGISKSSGEATPIKSVSGRRVDPVVFIEKNEPKEWVAXVEP 876
            M +CIA +K  G + +                ++A+KSLT Q+KDMALK SGAY+ C PCT  G++ S LK     S  D D                    W            +E++   I  +  E     S+S +  D  V ++ + PKEW+A VEP
Sbjct:    1 MFSCIACTKADGGEEVEH----GARGGTTPNTKEAVKSLTIQIKDMALKFSGAYKQCKPCT--GSSSSPLKKGH-RSFPDYDNASEGVPYPFMGGSAGSTPAWDFTNSSHHPAGRLESKFTSIYGNDRE-----SISAQSCD--VVLDDDGPKEWMAQVEP 147          
BLAST of DY306221 vs. ExPASy Swiss-Prot
Match: BRXL1_ARATH (Protein Brevis radix-like 1 OS=Arabidopsis thaliana GN=BRXL1 PE=2 SV=2)

HSP 1 Score: 60.4622 bits (145), Expect = 8.880e-17
Identity = 26/39 (66.67%), Postives = 29/39 (74.36%), Query Frame = 2
Query:  875 PGVLITFVPLPPGSHDLKRIPFRPDMFKKWQAPRWWGRN 991
            PGV ITFV LP G +DLKRI F  ++F KWQA RWWG N
Sbjct:  145 PGVHITFVSLPSGGNDLKRIRFSREVFDKWQAQRWWGEN 183          

HSP 2 Score: 48.521 bits (114), Expect = 8.880e-17
Identity = 42/152 (27.63%), Postives = 66/152 (43.42%), Query Frame = 1
Query:  421 MLTCIARSKQPGDDSLSQPEXXXXXXXXXXXKQQAIKSLTSQLKDMALKASGAYRHCSPCTAPGAAQSRLKSNSGESDADSDRFXXXXXXXXXXXXXXXXXXWGKEMEARLKGISKSSGEATPIKSVSGRRVDPVVFIEKNEPKEWVAXVEP 876
            M TCI  +K    D   + E            ++A+KSLT+Q+KDMA K SG+++   P   PG++ S L+    + D  S+                         ++       +S      +S+S +  D  V +E +EPKEW+A VEP
Sbjct:    1 MFTCINCTKMA--DRGEEDEEDEARGSTTPNTKEAVKSLTTQIKDMASKFSGSHKQSKP--TPGSSSSNLRKFP-DFDTASESVPYPYPGGSTSSTPAWDLPRSSYHQSGRPDSRFTSMYGGERESISAQSCD--VVLEDDEPKEWMAQVEP 145          
The following BLAST results are available for this feature:
BLAST of DY306221 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 6
Match NameE-valueIdentityDescription
BRXL4_ARATH6.680e-4352.35Protein Brevis radix-like 4 OS=Arabidopsis thalian... [more]
BRXL3_ARATH2.653e-3144.16Protein Brevis radix-like 3 OS=Arabidopsis thalian... [more]
BRXL2_ARATH4.840e-3039.74Protein Brevis radix-like 2 OS=Arabidopsis thalian... [more]
BRXL1_ORYSJ4.359e-2434.13Protein Brevis radix-like 1 OS=Oryza sativa subsp.... [more]
BRX_ARATH1.527e-2064.29Protein BREVIS RADIX OS=Arabidopsis thaliana GN=BR... [more]
BRXL1_ARATH8.880e-1766.67Protein Brevis radix-like 1 OS=Arabidopsis thalian... [more]
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Properties
Property NameValue
Genbank descriptionKN0AAQ7YA05RM1 CitNFL Citrus clementina cDNA 5, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>DY306221 ID=DY306221; Name=DY306221; organism=Citrus clementina; type=EST; length=1002bp
CTGTTACCCCCATTACTATTAAGCCAGCCAGCAAAGCAGCAGCAATTGCA
AGCAAGCCCTCTGTTTCTCAGTTTCTCTTTTCTTTTGCTCTTCCTTTTAT
TATTAATGAAGTTTAAAACCTAATCCTTCATTTCGCTTATGATTAAAGAG
AATCTCTGATGGGTATACCTGTAACTTGGCATTAAAGTGAGTGAGGGAGT
AAGCTTCTCGATGCTTGCGCTCGGATTTTGAAGCTGTGAATTCAGAATTT
ACTGCCACTACAATTCCAACATGTACTTCTCACCTTCTTTCTCTTTTCAT
TTTGTAGTTTCGTTTAAAAATTTTTGGGTAATAATCAGGCTTGAAGCGTA
AGCAGAATCCAATTCTCAAATCAAAATCTAACAATGCACAGAAATTGAGT
TGGAGAGTAAAAACTAGAAAATGCTGACCTGCATAGCTCGGTCGAAGCAA
CCGGGGGATGACTCACTTAGTCAACCCGAGGACTCTGACTCATCGACCGG
CAGCGGCAGTACCAAACAACAAGCCATCAAATCTCTCACATCTCAGCTAA
AGGACATGGCGTTAAAGGCATCAGGAGCGTACCGACACTGCAGCCCATGC
ACGGCTCCTGGTGCGGCTCAGAGTCGACTCAAGAGTAACTCGGGAGAGTC
TGATGCCGATTCGGACCGGTTCAGGTGGTCGTACAGAAGGACCGGTAGTT
CTAGCTCCACCACACCGAGGACCACTTGGGGGAAGGAGATGGAGGCCAGG
CTTAAGGGAATATCGAAGTCGAGTGGCGAGGCCACTCCGATAAAATCGGT
GAGTGGTCGCCGTGTTGACCCGGTCGTGTTCATTGAAAAGAATGAGCCGA
AGGAATGGGTGGCCCANGTGGAGCCCCGGTGTGCTTATTACCTTTGTTCC
TTTGCCACCTGGAAGCCATGACCTTAAGCGGATACCCTTCCGTCCAGACA
TGTTTAAAAAATGGCAAGCCCCAAGATGGTGGGGCCGAAACCCCCAAAAG
GG
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