DY306863

Overview
NameDY306863
Unique NameDY306863
TypeEST
OrganismCitrus clementina (Clementine)
Sequence length1189
Libraries
Library NameType
PhII-III-Vesicles1cdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Alignments
Feature NameTypeLocationAnalysis
DY306863_ssr787 microsatellite DY306863_ssr787:787..798. BLAST: Citrus ESTs to Prunus persica proteins V1
Homology
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BLAST of DY306863 vs. ExPASy Swiss-Prot
Match: 12KD_FRAAN (Auxin-repressed 12.5 kDa protein OS=Fragaria ananassa PE=2 SV=1)

HSP 1 Score: 126.716 bits (317), Expect = 2.640e-28
Identity = 65/121 (53.72%), Postives = 79/121 (65.29%), Query Frame = 1 
Query:   37 MLEKLWDDVVAGPQPDRGLGRLRKITTTPLAVKEGGEAESSSGKFQRSLSMXXXXXXXXXXXXXXXXXXXRKDNVWRSVFHPGSNLATRGIGAEVFDKPTHPNSPTVYDWLYSGETRSKHH 399
            +L+KLWDD+VAGPQP+RGLG LRK+   PL +K+ GE+           S                    RKDNVWRSVFHPGSNL+++ +G +VFD P  PNSPTVYDW+YSGETRSKHH
Sbjct:    3 LLDKLWDDIVAGPQPERGLGMLRKVPQ-PLNLKDEGES-----------SKITMPTTPTTPVTPTTPISARKDNVWRSVFHPGSNLSSKTMGNQVFDSP-QPNSPTVYDWMYSGETRSKHH 110
The following BLAST results are available for this feature:
BLAST of DY306863 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 1
Match NameE-valueIdentityDescription
12KD_FRAAN2.640e-2853.72Auxin-repressed 12.5 kDa protein OS=Fragaria anana... [more]
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Properties
Property NameValue
Genbank descriptionKN0AAH1DC08RM2 PhII-III-Vesicles1 Citrus clementina cDNA 5, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>DY306863 ID=DY306863; Name=DY306863; organism=Citrus clementina; type=EST; length=1189bp
GATTTAGAAACTAGCAGCTAAATTGTAAATTTAAAGATGCTAGAGAAGCT
TTGGGACGATGTTGTGGCAGGGCCTCAGCCTGATCGTGGCCTTGGCAGGC
TGAGGAAAATCACCACAACACCCTTAGCAGTCAAAGAGGGTGGTGAGGCG
GAGTCGTCGTCGGGCAAGTTCCAGAGGTCTCTGTCAATGCCAGCGAGTCC
AGGGGCACCGTCGACGCCAGTGACGCCGACGACGCCGCTGTCGGCGCGTA
AGGACAACGTGTGGAGGAGCGTGTTTCACCCCGGTAGCAACCTTGCTACT
AGGGGTATCGGTGCAGAGGTCTTTGACAAGCCCACACATCCTAACTCTCC
CACTGTTTATGACTGGCTTTACAGTGGGGAGACTAGGAGCAAGCATCATC
ACTGAGTGGATGATACGCTCCAGCGATGTAAATGAATGTGATGGGTCACC
AACTCACCGGATGAGTTGCCTGTAGTCTGTAGATAGTGTCGTTTCGTTTT
GGATTTCGCAACGTGTCCTTGTCGTTTTGTTAATGCTATTTGTATTACGT
GTCCTTCCTATCTAAAGTTTGGTTTTAAAATGCTGCTGACTAAAAGTAAA
CTAAAGACTGTGATGTTTTTATATCATATAAATTATTAATTGTATGTGAT
GTGAGGATTGCTAACCTGTGGGCGGAGATGAAAGGTTGCTGGTTTTTTGG
TTTAAGAAATTGTTTTTGATTGTCATTTTGTAGGAGCCAAGATCATCCCT
TTCGTGGACGGTCGTGATGAACCTATATGTTTTAATAATAAATAAATAAT
TTGCTTCCCTGGAAAAAAAAAAAAAAAAAAAATCTCGAGGGGGGGTCCGG
TTACCATTTTCCCCCTATGTAGAATCTAATTAAATTTCCCGGGCCGTTCT
TTNCACAACCTCTGGACTGGGAAAACCCCTGGGCTTACCCCAATTTATTT
CCCCTTTGGCGCCCATCCCCGTTTTTCTGCACGTTGGGGGAATTAACGAA
AAACCACCCCACCCGAACCCCCCCTTCTCACAAAGGTGTTTCCACACCGG
AGGAAGGCCCGAAAGGGGGGAATTTTTATTTTCCTTTGTTATTATTTGTG
TTTGAAAAAATTGTTCGCCTTTAGGGATTTTGTCTTTTTTATATTCGTCC
GCACCCGCTTTTTTTGTTTTTTGTCTCCACCACACGGAG
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