EH406135

Overview
NameEH406135
Unique NameEH406135
TypeEST
OrganismCitrus clementina (Clementine)
Sequence length462
Libraries
Library NameType
AbsCOv1cdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Alignments
Feature NameTypeLocationAnalysis
Ccv1_Contig9995 contig Ccv1_Contig9995:80..541. BLAST: Citrus Unigene V1 Contigs to Prunus persica proteins V1
Homology
BLAST of EH406135 vs. ExPASy Swiss-Prot
Match: RL38_ARATH (60S ribosomal protein L38 OS=Arabidopsis thaliana GN=RPL38A PE=2 SV=1)

HSP 1 Score: 108.997 bits (271), Expect = 9.947e-24
Identity = 52/56 (92.86%), Postives = 55/56 (98.21%), Query Frame = 2
Query:    2 TARRKDARSVKIKRSRDVVKFKVRCSKYLYTLCVFDSEKADKLKQSLPPGLSVQDL 169
            TARRKDARSVKIKRS+D+VKFKVRCS+YLYTLCVFD EKADKLKQSLPPGLSVQDL
Sbjct:   14 TARRKDARSVKIKRSKDIVKFKVRCSRYLYTLCVFDQEKADKLKQSLPPGLSVQDL 69          
BLAST of EH406135 vs. ExPASy Swiss-Prot
Match: RL38_SOLLC (60S ribosomal protein L38 OS=Solanum lycopersicum GN=RPL38 PE=3 SV=1)

HSP 1 Score: 102.064 bits (253), Expect = 1.216e-21
Identity = 49/56 (87.50%), Postives = 54/56 (96.43%), Query Frame = 2
Query:    2 TARRKDARSVKIKRSRDVVKFKVRCSKYLYTLCVFDSEKADKLKQSLPPGLSVQDL 169
            TARRKDAR+VKIK+++D+VKFKVRCSKYLYTLCV D EKADKLKQSLPPGLSVQDL
Sbjct:   14 TARRKDARTVKIKKNKDMVKFKVRCSKYLYTLCVSDFEKADKLKQSLPPGLSVQDL 69          
BLAST of EH406135 vs. ExPASy Swiss-Prot
Match: RL38_MOUSE (60S ribosomal protein L38 OS=Mus musculus GN=Rpl38 PE=2 SV=3)

HSP 1 Score: 91.6633 bits (226), Expect = 1.643e-18
Identity = 43/56 (76.79%), Postives = 52/56 (92.86%), Query Frame = 2
Query:    2 TARRKDARSVKIKRSRDVVKFKVRCSKYLYTLCVFDSEKADKLKQSLPPGLSVQDL 169
            TARRKDA+SVKIK+++D VKFKVRCS+YLYTL + D EKA+KLKQSLPPGL+V+DL
Sbjct:   14 TARRKDAKSVKIKKNKDNVKFKVRCSRYLYTLVITDKEKAEKLKQSLPPGLAVKDL 69          
BLAST of EH406135 vs. ExPASy Swiss-Prot
Match: RL38_BRABE (60S ribosomal protein L38 OS=Branchiostoma belcheri GN=RPL38 PE=3 SV=1)

HSP 1 Score: 91.6633 bits (226), Expect = 1.643e-18
Identity = 43/56 (76.79%), Postives = 52/56 (92.86%), Query Frame = 2
Query:    2 TARRKDARSVKIKRSRDVVKFKVRCSKYLYTLCVFDSEKADKLKQSLPPGLSVQDL 169
            TARRKDA+SVKIK+++D VKFKVRCS+YLYTL + D EKADKLKQSLPPGL+V++L
Sbjct:   14 TARRKDAKSVKIKKNKDNVKFKVRCSRYLYTLVITDKEKADKLKQSLPPGLAVKEL 69          
BLAST of EH406135 vs. ExPASy Swiss-Prot
Match: RL38_RAT (60S ribosomal protein L38 OS=Rattus norvegicus GN=Rpl38 PE=1 SV=2)

HSP 1 Score: 90.1225 bits (222), Expect = 4.782e-18
Identity = 42/56 (75.00%), Postives = 52/56 (92.86%), Query Frame = 2
Query:    2 TARRKDARSVKIKRSRDVVKFKVRCSKYLYTLCVFDSEKADKLKQSLPPGLSVQDL 169
            TARRKDA+SVKIK+++D VKFKVRCS+YLYTL + D EKA+KLKQSLPPGL+V++L
Sbjct:   14 TARRKDAKSVKIKKNKDNVKFKVRCSRYLYTLVITDKEKAEKLKQSLPPGLAVKEL 69          
BLAST of EH406135 vs. ExPASy Swiss-Prot
Match: RL38_HUMAN (60S ribosomal protein L38 OS=Homo sapiens GN=RPL38 PE=1 SV=2)

HSP 1 Score: 90.1225 bits (222), Expect = 4.782e-18
Identity = 42/56 (75.00%), Postives = 52/56 (92.86%), Query Frame = 2
Query:    2 TARRKDARSVKIKRSRDVVKFKVRCSKYLYTLCVFDSEKADKLKQSLPPGLSVQDL 169
            TARRKDA+SVKIK+++D VKFKVRCS+YLYTL + D EKA+KLKQSLPPGL+V++L
Sbjct:   14 TARRKDAKSVKIKKNKDNVKFKVRCSRYLYTLVITDKEKAEKLKQSLPPGLAVKEL 69          
BLAST of EH406135 vs. ExPASy Swiss-Prot
Match: RL38_BOVIN (60S ribosomal protein L38 OS=Bos taurus GN=RPL38 PE=3 SV=4)

HSP 1 Score: 90.1225 bits (222), Expect = 4.782e-18
Identity = 42/56 (75.00%), Postives = 52/56 (92.86%), Query Frame = 2
Query:    2 TARRKDARSVKIKRSRDVVKFKVRCSKYLYTLCVFDSEKADKLKQSLPPGLSVQDL 169
            TARRKDA+SVKIK+++D VKFKVRCS+YLYTL + D EKA+KLKQSLPPGL+V++L
Sbjct:   14 TARRKDAKSVKIKKNKDNVKFKVRCSRYLYTLVITDKEKAEKLKQSLPPGLAVKEL 69          
BLAST of EH406135 vs. ExPASy Swiss-Prot
Match: RL38_MACFA (60S ribosomal protein L38 OS=Macaca fascicularis GN=RPL38 PE=3 SV=3)

HSP 1 Score: 88.5817 bits (218), Expect = 1.391e-17
Identity = 41/55 (74.55%), Postives = 51/55 (92.73%), Query Frame = 2
Query:    2 TARRKDARSVKIKRSRDVVKFKVRCSKYLYTLCVFDSEKADKLKQSLPPGLSVQD 166
            TARRKDA+SVKIK+++D VKFKVRCS+YLYTL + D EKA+KLKQSLPPGL+V++
Sbjct:   14 TARRKDAKSVKIKKNKDNVKFKVRCSRYLYTLVITDKEKAEKLKQSLPPGLAVKE 68          
BLAST of EH406135 vs. ExPASy Swiss-Prot
Match: RL38_LYSTE (60S ribosomal protein L38 OS=Lysiphlebus testaceipes GN=RpL38 PE=3 SV=1)

HSP 1 Score: 84.3445 bits (207), Expect = 2.624e-16
Identity = 39/56 (69.64%), Postives = 50/56 (89.29%), Query Frame = 2
Query:    2 TARRKDARSVKIKRSRDVVKFKVRCSKYLYTLCVFDSEKADKLKQSLPPGLSVQDL 169
            TARRKDA+SVKIK++ + VKFKVRCS++LYTL + D EKA+KLKQSLPPGL V+++
Sbjct:   14 TARRKDAKSVKIKKNAENVKFKVRCSRFLYTLVITDKEKAEKLKQSLPPGLQVKEV 69          
BLAST of EH406135 vs. ExPASy Swiss-Prot
Match: RL38_IXOSC (60S ribosomal protein L38 OS=Ixodes scapularis GN=RpL38 PE=3 SV=1)

HSP 1 Score: 83.9593 bits (206), Expect = 3.427e-16
Identity = 42/57 (73.68%), Postives = 50/57 (87.72%), Query Frame = 2
Query:    2 TARRKDARSVKIKRSRD-VVKFKVRCSKYLYTLCVFDSEKADKLKQSLPPGLSVQDL 169
            TARRKDA+SVKIK++ D V KFKVRCSKYLYT+ V + EKA+KLKQSLPPGL V++L
Sbjct:   14 TARRKDAKSVKIKKNPDNVTKFKVRCSKYLYTIVVTEKEKAEKLKQSLPPGLQVKEL 70          
The following BLAST results are available for this feature:
BLAST of EH406135 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 29
Match NameE-valueIdentityDescription
RL38_ARATH9.947e-2492.8660S ribosomal protein L38 OS=Arabidopsis thaliana ... [more]
RL38_SOLLC1.216e-2187.5060S ribosomal protein L38 OS=Solanum lycopersicum ... [more]
RL38_MOUSE1.643e-1876.7960S ribosomal protein L38 OS=Mus musculus GN=Rpl38... [more]
RL38_BRABE1.643e-1876.7960S ribosomal protein L38 OS=Branchiostoma belcher... [more]
RL38_RAT4.782e-1875.0060S ribosomal protein L38 OS=Rattus norvegicus GN=... [more]
RL38_HUMAN4.782e-1875.0060S ribosomal protein L38 OS=Homo sapiens GN=RPL38... [more]
RL38_BOVIN4.782e-1875.0060S ribosomal protein L38 OS=Bos taurus GN=RPL38 P... [more]
RL38_MACFA1.391e-1774.5560S ribosomal protein L38 OS=Macaca fascicularis G... [more]
RL38_LYSTE2.624e-1669.6460S ribosomal protein L38 OS=Lysiphlebus testaceip... [more]
RL38_IXOSC3.427e-1673.6860S ribosomal protein L38 OS=Ixodes scapularis GN=... [more]

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Properties
Property NameValue
Genbank descriptionKN0AAB1AA03ZM1 AbsCOv1 Citrus clementina cDNA 5, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>EH406135 ID=EH406135; Name=EH406135; organism=Citrus clementina; type=EST; length=462bp
TACTGCAAGAAGGAAGGATGCCCGTTCAGTCAAAATCAAGAGGAGCAGGG
ATGTTGTTAAGTTTAAGGTTCGATGCTCAAAGTACCTTTACACACTCTGT
GTTTTTGACTCCGAGAAAGCTGACAAGTTGAAGCAATCTCTTCCTCCAGG
TTTGAGCGTCCAGGACCTGTGAAGAAGATCTTCTAACTCTTGGGTGGGAT
CAGAAGTTGATGAAATTTGTTTCATACTTTCTACCTCGAAATTGTTAGGC
CTTACAAATTTTGATGAAGACTCAAGTTTGATAAATGTTATTGTTTTTTT
ATTAGTTTTCTTGGGAATTTTCTCCAAATATTTCGTTTGCATGAGTTTGA
GTTGTATATCACCTTAGTGTTTTTTTATCGATCAAGTCGGAACATGTCTA
TTTATTTTGTGGCCTAATTATTATATTTCTTATTTATTAGTAATCTAAGC
ACAAGTCCCCCG
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