EH406241

Overview
NameEH406241
Unique NameEH406241
TypeEST
OrganismCitrus clementina (Clementine)
Sequence length715
Libraries
Library NameType
AbsCOv1cdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Alignments
Feature NameTypeLocationAnalysis
Ccv1_Contig305 contig Ccv1_Contig305:1331..2045. BLAST: Citrus Unigene V1 Contigs to Prunus persica proteins V1
Homology
BLAST of EH406241 vs. ExPASy Swiss-Prot
Match: UPL3_ARATH (E3 ubiquitin-protein ligase UPL3 OS=Arabidopsis thaliana GN=UPL3 PE=1 SV=1)

HSP 1 Score: 158.303 bits (399), Expect = 3.744e-38
Identity = 78/88 (88.64%), Postives = 84/88 (95.45%), Query Frame = 2
Query:    2 QFVTGAPRLPPGGLAVLNPKLTIVRKHSSTAPNTASNGTGPSESADDDLPSVMTCANYLKLPPYSTKEIMYKKLVYAISEGQGSFDLS 265
            QFVTGAPRLPPGGLAVLNPKLTIVRKHSST+ + A+NG G SE+ADDDLPSVMTCANYLKLPPYSTKEIMYKKL+YAI+EGQGSFDLS
Sbjct: 1802 QFVTGAPRLPPGGLAVLNPKLTIVRKHSSTS-SAAANGAGASETADDDLPSVMTCANYLKLPPYSTKEIMYKKLLYAINEGQGSFDLS 1888          
BLAST of EH406241 vs. ExPASy Swiss-Prot
Match: UPL4_ARATH (E3 ubiquitin-protein ligase UPL4 OS=Arabidopsis thaliana GN=UPL4 PE=2 SV=1)

HSP 1 Score: 115.546 bits (288), Expect = 2.783e-25
Identity = 60/88 (68.18%), Postives = 68/88 (77.27%), Query Frame = 2
Query:    2 QFVTGAPRLPPGGLAVLNPKLTIVRKHSSTAPNTASNGTGPSESADDDLPSVMTCANYLKLPPYSTKEIMYKKLVYAISEGQGSFDLS 265
            QFVTG+PRLP GGLA L+PKLTIVRKH S             +S+D DLPSVMTCANYLKLPPYS+KE M +KL+YAI+EGQGSF LS
Sbjct: 1428 QFVTGSPRLPHGGLASLSPKLTIVRKHGS-------------DSSDTDLPSVMTCANYLKLPPYSSKEKMKEKLIYAITEGQGSFHLS 1502          
BLAST of EH406241 vs. ExPASy Swiss-Prot
Match: TRIPC_HUMAN (Probable E3 ubiquitin-protein ligase TRIP12 OS=Homo sapiens GN=TRIP12 PE=1 SV=1)

HSP 1 Score: 90.8929 bits (224), Expect = 7.341e-18
Identity = 51/88 (57.95%), Postives = 58/88 (65.91%), Query Frame = 2
Query:    2 QFVTGAPRLPPGGLAVLNPKLTIVRKHSSTAPNTASNGTGPSESADDDLPSVMTCANYLKLPPYSTKEIMYKKLVYAISEGQGSFDLS 265
            QFVTG+PRLP GG   LNP LTIVRK   +           +E+ DD LPSVMTC NYLKLP YS+ EIM +KL+ A  EGQ SF LS
Sbjct: 1916 QFVTGSPRLPVGGFRSLNPPLTIVRKTFES-----------TENPDDFLPSVMTCVNYLKLPDYSSIEIMREKLLIAAREGQQSFHLS 1992          
BLAST of EH406241 vs. ExPASy Swiss-Prot
Match: UFD4_YEAST (Ubiquitin fusion degradation protein 4 OS=Saccharomyces cerevisiae GN=UFD4 PE=1 SV=1)

HSP 1 Score: 88.5817 bits (218), Expect = 3.643e-17
Identity = 48/88 (54.55%), Postives = 60/88 (68.18%), Query Frame = 2
Query:    2 QFVTGAPRLPPGGLAVLNPKLTIVRKHSSTAPNTASNGTGPSESADDDLPSVMTCANYLKLPPYSTKEIMYKKLVYAISEGQGSFDLS 265
            QF+TG+P+LP GG   LNPK T+V KH       A +G     +AD+ LPSVMTCANYLKLP Y++K+IM  +L  AI EG G+F LS
Sbjct: 1407 QFLTGSPKLPIGGFKSLNPKFTVVLKH-------AEDGL----TADEYLPSVMTCANYLKLPKYTSKDIMRSRLCQAIEEGAGAFLLS 1483          
BLAST of EH406241 vs. ExPASy Swiss-Prot
Match: YDE1_SCHPO (Probable ubiquitin fusion degradation protein C12B10.01c OS=Schizosaccharomyces pombe GN=SPAC12B10.01c PE=2 SV=2)

HSP 1 Score: 84.7297 bits (208), Expect = 5.261e-16
Identity = 46/88 (52.27%), Postives = 56/88 (63.64%), Query Frame = 2
Query:    2 QFVTGAPRLPPGGLAVLNPKLTIVRKHSSTAPNTASNGTGPSESADDDLPSVMTCANYLKLPPYSTKEIMYKKLVYAISEGQGSFDLS 265
            QF+TG+ +LP GG A LNP LT+VR+ +            P    DD LPSVMTC NYLKLP YS+ E++  +L  AI EGQGSF LS
Sbjct: 1571 QFITGSRKLPIGGFAGLNPPLTVVRRLNE-----------PPYVPDDYLPSVMTCVNYLKLPEYSSSEVLGSRLSKAILEGQGSFHLS 1647          
BLAST of EH406241 vs. ExPASy Swiss-Prot
Match: HECD1_HUMAN (E3 ubiquitin-protein ligase HECTD1 OS=Homo sapiens GN=HECTD1 PE=1 SV=2)

HSP 1 Score: 68.9366 bits (167), Expect = 2.987e-11
Identity = 38/80 (47.50%), Postives = 48/80 (60.00%), Query Frame = 2
Query:    2 QFVTGAPRLPPGGLAVLNPKLTIVRKHSSTAPNTASNGTGPSESADDDLPSVMTCANYLKLPPYSTKEIMYKKLVYAISE 241
            QF TG   LPPGGLA L+P+LT+VRK  +T               D   PSV TC +YLKLP YS++EIM ++L+ A  E
Sbjct: 2542 QFTTGCSTLPPGGLANLHPRLTVVRKVDAT---------------DASYPSVNTCVHYLKLPEYSSEEIMRERLLAATME 2606          
The following BLAST results are available for this feature:
BLAST of EH406241 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 6
Match NameE-valueIdentityDescription
UPL3_ARATH3.744e-3888.64E3 ubiquitin-protein ligase UPL3 OS=Arabidopsis th... [more]
UPL4_ARATH2.783e-2568.18E3 ubiquitin-protein ligase UPL4 OS=Arabidopsis th... [more]
TRIPC_HUMAN7.341e-1857.95Probable E3 ubiquitin-protein ligase TRIP12 OS=Hom... [more]
UFD4_YEAST3.643e-1754.55Ubiquitin fusion degradation protein 4 OS=Saccharo... [more]
YDE1_SCHPO5.261e-1652.27Probable ubiquitin fusion degradation protein C12B... [more]
HECD1_HUMAN2.987e-1147.50E3 ubiquitin-protein ligase HECTD1 OS=Homo sapiens... [more]
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Properties
Property NameValue
Genbank descriptionKN0AAB2AF09ZM1 AbsCOv1 Citrus clementina cDNA 5, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>EH406241 ID=EH406241; Name=EH406241; organism=Citrus clementina; type=EST; length=715bp
TCAGTTTGTTACTGGTGCACCTCGTCTTCCACCGGGTGGGTTGGCGGTGC
TGAATCCAAAGCTTACCATTGTCAGAAAGCATTCTTCAACTGCACCTAAT
ACAGCATCAAATGGAACCGGGCCTTCGGAATCAGCGGATGATGACTTGCC
AAGTGTCATGACTTGTGCCAATTACCTGAAGCTTCCTCCTTACTCTACCA
AGGAAATTATGTACAAGAAACTGGTTTATGCAATAAGCGAAGGGCAGGGA
TCTTTTGATCTGTCATGAGTTCTCAAAACTAACCGATGGACCTTTGTATA
TTAATATATGTGTCATCAAGTCAATTCTCTTACCTGGGGATTATTCATCT
TTGAAAGTAGCATCATATTTCAGTCAAATAATGGCTGCTTTTCACTGCCC
TTGTATCAATGTTCACATCATTGGCAAGTTGATTTTTTTTGTTTCAGGTC
AGACTTCAGGCTGCCACAGTGCCACACTCTCTCAACAGAGATTTGAAGAG
GGAAATTGTGGAGCAGTTTTTTGGCTGCTGCTAGGACTTTGTATATAAAT
AGGAAACTTAGATTTTTTGTCTTTTTTCCCTCAATTGACAAGTTATTGGC
TGCAGAGTCGACATAACATGTATGGCATAAAAATGATGGGAAGGAAAAAT
AAATTGTTGAAATGTTATGCCTTATTTTAAGCTCATATTCTTTTCAATTT
GAAATCTTTGATTAA
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