EH406273

Overview
NameEH406273
Unique NameEH406273
TypeEST
OrganismCitrus clementina (Clementine)
Sequence length660
Libraries
Library NameType
AbsCOv1cdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Alignments
Feature NameTypeLocationAnalysis
Ccv1_Contig135 contig Ccv1_Contig135:505..1164. BLAST: Citrus Unigene V1 Contigs to Prunus persica proteins V1
Homology
BLAST of EH406273 vs. ExPASy Swiss-Prot
Match: TLC1_SOLTU (Plastidic ATP/ADP-transporter OS=Solanum tuberosum PE=2 SV=2)

HSP 1 Score: 196.823 bits (499), Expect = 8.154e-50
Identity = 103/131 (78.63%), Postives = 113/131 (86.26%), Query Frame = 2
Query:    2 AYIPLYEDTKVKGKAAIDVVCNPLGKSGGALIQQFMILTFGSLANSTPYLGGILLVIVLAWLGAARSLDTQFTALRQEKKLEKEMERAAVKIPVVSENEGGNGTLPGGSALNAAG----ETPSEASSPRNI 382
            AYIPL EDTKVKGKAAIDVVCNPLGKSGGALIQQFMILTFGSLA+STPYLGG+LLVIVLAWLGAA+SLD QFT LRQE+ LEKEMERA++KIPVVS+NE GNG L   S+LN AG       SE SSPR++
Sbjct:  501 AYIPLDEDTKVKGKAAIDVVCNPLGKSGGALIQQFMILTFGSLASSTPYLGGVLLVIVLAWLGAAKSLDGQFTQLRQEEDLEKEMERASLKIPVVSQNENGNGPLSSESSLNPAGGDSTNASSEPSSPRSL 631          
BLAST of EH406273 vs. ExPASy Swiss-Prot
Match: TLC1_ARATH (ADP,ATP carrier protein 1, chloroplastic OS=Arabidopsis thaliana GN=AATP1 PE=1 SV=2)

HSP 1 Score: 172.17 bits (435), Expect = 2.151e-42
Identity = 95/131 (72.52%), Postives = 108/131 (82.44%), Query Frame = 2
Query:    2 AYIPLYEDTKVKGKAAIDVVCNPLGKSGGALIQQFMILTFGSLANSTPYLGGILLVIVLAWLGAARSLDTQFTALRQEKKLEKEMERA-AVKIPVVSENEGGNGTLPGGSALNAAGETPS---EASSPRNI 382
            AYIPL EDTKVKGKAAIDVVCNPLGKSGGALIQQFMIL+FGSLANSTPYLG ILLVIV AWL AA+SL+ QF +LR E++LEKEMERA +VKIPVVS++E GNG+L         GE+PS   E S+P N+
Sbjct:  503 AYIPLDEDTKVKGKAAIDVVCNPLGKSGGALIQQFMILSFGSLANSTPYLGMILLVIVTAWLAAAKSLEGQFNSLRSEEELEKEMERASSVKIPVVSQDESGNGSL---------GESPSSSPEKSAPTNL 624          
BLAST of EH406273 vs. ExPASy Swiss-Prot
Match: TLC2_ARATH (ADP,ATP carrier protein 2, chloroplastic OS=Arabidopsis thaliana GN=AATP2 PE=1 SV=2)

HSP 1 Score: 154.066 bits (388), Expect = 6.061e-37
Identity = 81/104 (77.88%), Postives = 90/104 (86.54%), Query Frame = 2
Query:    2 AYIPLYEDTKVKGKAAIDVVCNPLGKSGGALIQQFMILTFGSLANSTPYLGGILLVIVLAWLGAARSLDTQFTALRQEKKLEKEMERA-AVKIPVVSENEGGNG 310
            AYIPL EDTKVKGKAAIDVVCNPLGKSGGALIQQFMILTFGSLANSTPYLG ILL IV AWL AA+SL+ QF  L  E++LE+EMERA +VKIPVVS+ +  +G
Sbjct:  500 AYIPLDEDTKVKGKAAIDVVCNPLGKSGGALIQQFMILTFGSLANSTPYLGVILLGIVTAWLAAAKSLEGQFNTLMSEEELEREMERASSVKIPVVSQEDAPSG 603          
BLAST of EH406273 vs. ExPASy Swiss-Prot
Match: TLC1_CHLPN (ADP,ATP carrier protein 1 OS=Chlamydia pneumoniae GN=tlcA PE=3 SV=1)

HSP 1 Score: 81.6481 bits (200), Expect = 3.823e-15
Identity = 46/89 (51.69%), Postives = 57/89 (64.04%), Query Frame = 2
Query:    2 AYIPLYEDTKVKGKAAIDVVCNPLGKSGGALIQQFMILTFGSLANSTPYLGGILLVIVLAWLGAARSLDTQFTALRQEKKLEKEMERAA 268
            AYIPL ++ KVKGKAAIDVV    GKSGGALIQQ +++  GS+   TPYL  ILL I+  WL +A  L+  F A    K+ E   E +A
Sbjct:  423 AYIPLDQEQKVKGKAAIDVVAARFGKSGGALIQQGLLVICGSIGAMTPYLAVILLFIIAIWLVSATKLNKLFLAQSALKEQEVAQEDSA 511          
BLAST of EH406273 vs. ExPASy Swiss-Prot
Match: TLC1_CHLTR (ADP,ATP carrier protein 1 OS=Chlamydia trachomatis GN=tlcA PE=3 SV=1)

HSP 1 Score: 78.9518 bits (193), Expect = 2.478e-14
Identity = 43/91 (47.25%), Postives = 56/91 (61.54%), Query Frame = 2
Query:    2 AYIPLYEDTKVKGKAAIDVVCNPLGKSGGALIQQFMILTFGSLANSTPYLGGILLVIVLAWLGAARSLDTQFTALRQEKKLEKEMERAAVK 274
            AYIPL ++ KVKGKAAIDVV    GKSGG+LIQQ +++  GS+   TP+L   L  I++ WL +A  L+  F A    K+ E     AA K
Sbjct:  421 AYIPLDQEQKVKGKAAIDVVAARFGKSGGSLIQQGLLVVCGSIGAMTPFLAVALFAIIMVWLTSATKLNKLFLAASAAKEQELAEAAAAEK 511          
BLAST of EH406273 vs. ExPASy Swiss-Prot
Match: TLC1_CHLMU (ADP,ATP carrier protein 1 OS=Chlamydia muridarum GN=tlcA PE=3 SV=1)

HSP 1 Score: 78.5666 bits (192), Expect = 3.236e-14
Identity = 42/91 (46.15%), Postives = 57/91 (62.64%), Query Frame = 2
Query:    2 AYIPLYEDTKVKGKAAIDVVCNPLGKSGGALIQQFMILTFGSLANSTPYLGGILLVIVLAWLGAARSLDTQFTALRQEKKLEKEMERAAVK 274
            AYIPL ++ KVKGKAAIDVV    GKSGG+LIQQ +++  GS++  TP+L   L  I++ WL +A  L+  F A    K+ E     AA +
Sbjct:  421 AYIPLDQEQKVKGKAAIDVVAARFGKSGGSLIQQGLLVVCGSISAMTPFLAVALFAIIMVWLTSATKLNKLFLAASAAKEQELAEATAAAE 511          
BLAST of EH406273 vs. ExPASy Swiss-Prot
Match: TLCA_RICBR (ADP,ATP carrier protein 1 OS=Rickettsia bellii (strain RML369-C) GN=tlcA PE=3 SV=1)

HSP 1 Score: 67.781 bits (164), Expect = 5.713e-11
Identity = 33/77 (42.86%), Postives = 49/77 (63.64%), Query Frame = 2
Query:    2 AYIPLYEDTKVKGKAAIDVVCNPLGKSGGALIQQFMILTFGSL--ANSTPYLGGILLVIVLAWLGAARSLDTQFTAL 226
            AYIPL +D +VKG+AA++V+    GKSGGA+IQ    + F +L    +TPY   I  VIV+ W+ A + L+ ++  L
Sbjct:  416 AYIPLDKDLRVKGQAAVEVIGGRFGKSGGAIIQSTFFIIFPALGFVEATPYFASIFFVIVILWIYAVKGLNKEYQVL 492          
BLAST of EH406273 vs. ExPASy Swiss-Prot
Match: TLCA_RICTY (ADP,ATP carrier protein 1 OS=Rickettsia typhi GN=tlcA PE=3 SV=1)

HSP 1 Score: 67.3958 bits (163), Expect = 7.461e-11
Identity = 32/77 (41.56%), Postives = 49/77 (63.64%), Query Frame = 2
Query:    2 AYIPLYEDTKVKGKAAIDVVCNPLGKSGGALIQQFMILTFGSLA--NSTPYLGGILLVIVLAWLGAARSLDTQFTAL 226
            AYIPL +D +VKG+AA++V+   LGKSGGA+IQ    + F +     +TPY   I  +IV+ W+ A + L+ ++  L
Sbjct:  416 AYIPLDKDLRVKGQAAVEVIGGRLGKSGGAIIQSTFFILFPAFGFIEATPYFASIFFIIVILWIFAVKGLNKEYQVL 492          
BLAST of EH406273 vs. ExPASy Swiss-Prot
Match: TLCA_RICPR (ADP,ATP carrier protein 1 OS=Rickettsia prowazekii GN=tlcA PE=1 SV=1)

HSP 1 Score: 67.0106 bits (162), Expect = 9.744e-11
Identity = 32/77 (41.56%), Postives = 49/77 (63.64%), Query Frame = 2
Query:    2 AYIPLYEDTKVKGKAAIDVVCNPLGKSGGALIQQ--FMILTFGSLANSTPYLGGILLVIVLAWLGAARSLDTQFTAL 226
            AYIPL +D +VKG+AA++V+   LGKSGGA+IQ   F++        +TPY   I  +IV+ W+ A + L+ ++  L
Sbjct:  416 AYIPLDKDLRVKGQAAVEVIGGRLGKSGGAIIQSTFFILFPVFGFIEATPYFASIFFIIVILWIFAVKGLNKEYQVL 492          
The following BLAST results are available for this feature:
BLAST of EH406273 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 9
Match NameE-valueIdentityDescription
TLC1_SOLTU8.154e-5078.63Plastidic ATP/ADP-transporter OS=Solanum tuberosum... [more]
TLC1_ARATH2.151e-4272.52ADP,ATP carrier protein 1, chloroplastic OS=Arabid... [more]
TLC2_ARATH6.061e-3777.88ADP,ATP carrier protein 2, chloroplastic OS=Arabid... [more]
TLC1_CHLPN3.823e-1551.69ADP,ATP carrier protein 1 OS=Chlamydia pneumoniae ... [more]
TLC1_CHLTR2.478e-1447.25ADP,ATP carrier protein 1 OS=Chlamydia trachomatis... [more]
TLC1_CHLMU3.236e-1446.15ADP,ATP carrier protein 1 OS=Chlamydia muridarum G... [more]
TLCA_RICBR5.713e-1142.86ADP,ATP carrier protein 1 OS=Rickettsia bellii (st... [more]
TLCA_RICTY7.461e-1141.56ADP,ATP carrier protein 1 OS=Rickettsia typhi GN=t... [more]
TLCA_RICPR9.744e-1141.56ADP,ATP carrier protein 1 OS=Rickettsia prowazekii... [more]
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Properties
Property NameValue
Genbank descriptionKN0AAB2CG04ZM1 AbsCOv1 Citrus clementina cDNA 5, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>EH406273 ID=EH406273; Name=EH406273; organism=Citrus clementina; type=EST; length=660bp
GGCCTACATTCCATTATATGAAGACACCAAGGTTAAAGGGAAGGCAGCCA
TCGATGTTGTGTGCAACCCGTTGGGGAAATCTGGAGGAGCTCTTATTCAG
CAGTTTATGATATTAACCTTTGGGTCCCTTGCAAATTCAACTCCTTATCT
TGGAGGGATACTTTTGGTGATTGTTCTTGCATGGTTAGGAGCAGCCAGGT
CTTTAGATACCCAATTTACAGCTTTGCGTCAGGAAAAAAAGCTTGAGAAG
GAAATGGAAAGAGCTGCTGTTAAGATCCCAGTTGTCTCTGAAAATGAAGG
CGGGAATGGTACTCTTCCAGGTGGATCAGCTTTGAATGCAGCAGGTGAGA
CACCCAGTGAAGCATCTAGTCCACGCAATATCTGAAATAGTTTCTTCCAA
TTCCTTGCCGCATGAAGAATGAGAAGCATCAATACTTGAGGTATTGCTTG
TAGGATCTTCTCAAATTACACAAATAATAGTAGCTAAACAAAGTATGAGC
CCGTCTGTCTTAATTCCGCCTTTTTCCCGTAGATAATGAGTTTAGTATCT
GTTTACTCATACATTCATGTTCTTTGTAAAATTCGAATTTGGTTTTTTAT
TGATAGCAACAACATTAAATTTAATAATTTCTTGATTATATCTTAGTCCA
AATTTGTACC
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