EH406340

Overview
NameEH406340
Unique NameEH406340
TypeEST
OrganismCitrus clementina (Clementine)
Sequence length738
Libraries
Library NameType
AbsCOv1cdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Alignments
Feature NameTypeLocationAnalysis
Ccv1_Contig9997 contig Ccv1_Contig9997:342..1079. BLAST: Citrus Unigene V1 Contigs to Prunus persica proteins V1
Homology
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BLAST of EH406340 vs. ExPASy Swiss-Prot
Match: TSJT1_TOBAC (Stem-specific protein TSJT1 OS=Nicotiana tabacum GN=TSJT1 PE=2 SV=1)

HSP 1 Score: 80.8777 bits (198), Expect = 8.025e-15
Identity = 34/66 (51.52%), Postives = 51/66 (77.27%), Query Frame = 3 
Query:    6 GHIENVALLKQQYGLNKTANEVIIVIEAYRTLRDRGPYPADQVVRDIQGKFAFILYDSSSKNAFLA 203
            G ++N   L++ YGL++ A E +I++EAY+ LRDR PYP DQV+++++GKFAFIL+DS +   FLA
Sbjct:   83 GALDNTFDLRKHYGLSRQATEAMIMVEAYKVLRDRAPYPPDQVIKELEGKFAFILFDSKASTLFLA 148
The following BLAST results are available for this feature:
BLAST of EH406340 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 1
Match NameE-valueIdentityDescription
TSJT1_TOBAC8.025e-1551.52Stem-specific protein TSJT1 OS=Nicotiana tabacum G... [more]
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Properties
Property NameValue
Genbank descriptionKN0AAB3BH05ZM1 AbsCOv1 Citrus clementina cDNA 5, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>EH406340 ID=EH406340; Name=EH406340; organism=Citrus clementina; type=EST; length=738bp
TCCAAGGCCACATTGAGAACGTTGCTCTGCTTAAGCAGCAATATGGACTA
AACAAAACAGCAAATGAGGTCATCATTGTCATTGAGGCTTACAGAACTCT
CAGGGATCGAGGTCCTTATCCTGCCGATCAGGTTGTCAGAGACATTCAAG
GGAAGTTTGCGTTTATTCTCTATGACAGCTCTTCGAAAAACGCATTCTTA
GCTTCTGATGCTGATGGGAGTGTTCCCTTCTTCTGGGGTACTGATTCTGA
AGGCCATCTTGTTCTTTCCGATGATGTAGAGATTGTGAAGAAGGGCTGTG
GGAAGTCTTTTGCACCATTCCCTAAAGCATGCTTCTTTACATCTTCTGGT
GGATTGAGGAGCTTCGAGCACCCCATGAATGAGCTGAAGCCTGTGCCAAG
GGTAGATAGTTCAGGTCAGGTTTGTGGTTCAACTTTCAAGGTGGATGCTG
AGACTAAGAAAGAAACCGGCATGCCAAGAGTTGGGAGTGCTGCCAACTGG
TCCACCAACCTCTAAGTTCATAACTACAACTTTCCGGGAAGGTTTTTATT
ATTATTGGGCCTTCCGAGGGTTTATTTCATCACTTTTGCAGTTCCCGTTA
CCATCATATGACTTATATGCTTTATTTGGTACCGAGCTTTACATTGTTTA
TTAGAGATTTCATGCAGCAAACTGTGTTGCTTACTATCAAAACTAAGCCC
AGGCTTTGTGGCATATAACATGCAATAATATTACATTG
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