EH406355

Overview
NameEH406355
Unique NameEH406355
TypeEST
OrganismCitrus clementina (Clementine)
Sequence length674
Libraries
Library NameType
AbsCOv1cdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
[Close]
BLAST of EH406355 vs. ExPASy Swiss-Prot
Match: RS241_ARATH (40S ribosomal protein S24-1 OS=Arabidopsis thaliana GN=RPS24A PE=2 SV=1)

HSP 1 Score: 218.779 bits (556), Expect = 2.098e-56
Identity = 108/120 (90.00%), Postives = 116/120 (96.67%), Query Frame = 3 
Query:   33 MADKAITIRFRKFMTNRLLSRKQFVIDVLHPGRANVSKAELKEKLARMYDVRDANAIFVFKFRTHFGGGKSTGFGLIYDSVESAKKFEPKYRLIRNGLATKVEKSRKQMKERKNRQKKIR 392
            MA+KA+TIR RKFMTNRLLSRKQFVIDVLHPGRANVSKAELKEKLARMY+V+D NAIFVFKFRTHFGGGKS+GFGLIYD+VESAKKFEPKYRLIRNGL TK+EKSRKQ+KERKNR KKIR
Sbjct:    1 MAEKAVTIRTRKFMTNRLLSRKQFVIDVLHPGRANVSKAELKEKLARMYEVKDPNAIFVFKFRTHFGGGKSSGFGLIYDTVESAKKFEPKYRLIRNGLDTKIEKSRKQIKERKNRAKKIR 120
[Close]
BLAST of EH406355 vs. ExPASy Swiss-Prot
Match: RS242_ARATH (40S ribosomal protein S24-2 OS=Arabidopsis thaliana GN=RPS24B PE=2 SV=2)

HSP 1 Score: 211.46 bits (537), Expect = 3.350e-54
Identity = 103/120 (85.83%), Postives = 114/120 (95.00%), Query Frame = 3 
Query:   33 MADKAITIRFRKFMTNRLLSRKQFVIDVLHPGRANVSKAELKEKLARMYDVRDANAIFVFKFRTHFGGGKSTGFGLIYDSVESAKKFEPKYRLIRNGLATKVEKSRKQMKERKNRQKKIR 392
            MA+KA+TIR R FMTNRLL+RKQFVIDVLHPGRANVSKAELKEKLARMY+V+D NAIF FKFRTHFGGGKS+G+GLIYD+VE+AKKFEPKYRLIRNGL TK+EKSRKQ+KERKNR KKIR
Sbjct:    1 MAEKAVTIRTRNFMTNRLLARKQFVIDVLHPGRANVSKAELKEKLARMYEVKDPNAIFCFKFRTHFGGGKSSGYGLIYDTVENAKKFEPKYRLIRNGLDTKIEKSRKQIKERKNRAKKIR 120
[Close]
BLAST of EH406355 vs. ExPASy Swiss-Prot
Match: RS24_RAT (40S ribosomal protein S24 OS=Rattus norvegicus GN=Rps24 PE=2 SV=1)

HSP 1 Score: 158.303 bits (399), Expect = 3.365e-38
Identity = 79/115 (68.70%), Postives = 93/115 (80.87%), Query Frame = 3 
Query:   48 ITIRFRKFMTNRLLSRKQFVIDVLHPGRANVSKAELKEKLARMYDVRDANAIFVFKFRTHFGGGKSTGFGLIYDSVESAKKFEPKYRLIRNGLATKVEKSRKQMKERKNRQKKIR 392
            +TIR RKFMTNRLL RKQ VIDVLHPG+A V K E++EKLA+MY     + IFVF FRTHFGGGK+TGFG+IYDS++ AKK EPK+RL R+GL  K + SRKQ KERKNR KK+R
Sbjct:    5 VTIRTRKFMTNRLLQRKQMVIDVLHPGKATVPKTEIREKLAKMYKTTP-DVIFVFGFRTHFGGGKTTGFGMIYDSLDYAKKNEPKHRLARHGLYEKKKTSRKQRKERKNRMKKVR 118
[Close]
BLAST of EH406355 vs. ExPASy Swiss-Prot
Match: RS24_PONAB (40S ribosomal protein S24 OS=Pongo abelii GN=RPS24 PE=2 SV=1)

HSP 1 Score: 158.303 bits (399), Expect = 3.365e-38
Identity = 79/115 (68.70%), Postives = 93/115 (80.87%), Query Frame = 3 
Query:   48 ITIRFRKFMTNRLLSRKQFVIDVLHPGRANVSKAELKEKLARMYDVRDANAIFVFKFRTHFGGGKSTGFGLIYDSVESAKKFEPKYRLIRNGLATKVEKSRKQMKERKNRQKKIR 392
            +TIR RKFMTNRLL RKQ VIDVLHPG+A V K E++EKLA+MY     + IFVF FRTHFGGGK+TGFG+IYDS++ AKK EPK+RL R+GL  K + SRKQ KERKNR KK+R
Sbjct:    5 VTIRTRKFMTNRLLQRKQMVIDVLHPGKATVPKTEIREKLAKMYKTTP-DVIFVFGFRTHFGGGKTTGFGMIYDSLDYAKKNEPKHRLARHGLYEKKKTSRKQRKERKNRMKKVR 118
[Close]
BLAST of EH406355 vs. ExPASy Swiss-Prot
Match: RS24_MOUSE (40S ribosomal protein S24 OS=Mus musculus GN=Rps24 PE=1 SV=1)

HSP 1 Score: 158.303 bits (399), Expect = 3.365e-38
Identity = 79/115 (68.70%), Postives = 93/115 (80.87%), Query Frame = 3 
Query:   48 ITIRFRKFMTNRLLSRKQFVIDVLHPGRANVSKAELKEKLARMYDVRDANAIFVFKFRTHFGGGKSTGFGLIYDSVESAKKFEPKYRLIRNGLATKVEKSRKQMKERKNRQKKIR 392
            +TIR RKFMTNRLL RKQ VIDVLHPG+A V K E++EKLA+MY     + IFVF FRTHFGGGK+TGFG+IYDS++ AKK EPK+RL R+GL  K + SRKQ KERKNR KK+R
Sbjct:    5 VTIRTRKFMTNRLLQRKQMVIDVLHPGKATVPKTEIREKLAKMYKTTP-DVIFVFGFRTHFGGGKTTGFGMIYDSLDYAKKNEPKHRLARHGLYEKKKTSRKQRKERKNRMKKVR 118
[Close]
BLAST of EH406355 vs. ExPASy Swiss-Prot
Match: RS24_MESAU (40S ribosomal protein S24 OS=Mesocricetus auratus GN=RPS24 PE=3 SV=1)

HSP 1 Score: 158.303 bits (399), Expect = 3.365e-38
Identity = 79/115 (68.70%), Postives = 93/115 (80.87%), Query Frame = 3 
Query:   48 ITIRFRKFMTNRLLSRKQFVIDVLHPGRANVSKAELKEKLARMYDVRDANAIFVFKFRTHFGGGKSTGFGLIYDSVESAKKFEPKYRLIRNGLATKVEKSRKQMKERKNRQKKIR 392
            +TIR RKFMTNRLL RKQ VIDVLHPG+A V K E++EKLA+MY     + IFVF FRTHFGGGK+TGFG+IYDS++ AKK EPK+RL R+GL  K + SRKQ KERKNR KK+R
Sbjct:    5 VTIRTRKFMTNRLLQRKQMVIDVLHPGKATVPKTEIREKLAKMYKTTP-DVIFVFGFRTHFGGGKTTGFGMIYDSLDYAKKNEPKHRLARHGLYEKKKTSRKQRKERKNRMKKVR 118
[Close]
BLAST of EH406355 vs. ExPASy Swiss-Prot
Match: RS24_HUMAN (40S ribosomal protein S24 OS=Homo sapiens GN=RPS24 PE=1 SV=1)

HSP 1 Score: 158.303 bits (399), Expect = 3.365e-38
Identity = 79/115 (68.70%), Postives = 93/115 (80.87%), Query Frame = 3 
Query:   48 ITIRFRKFMTNRLLSRKQFVIDVLHPGRANVSKAELKEKLARMYDVRDANAIFVFKFRTHFGGGKSTGFGLIYDSVESAKKFEPKYRLIRNGLATKVEKSRKQMKERKNRQKKIR 392
            +TIR RKFMTNRLL RKQ VIDVLHPG+A V K E++EKLA+MY     + IFVF FRTHFGGGK+TGFG+IYDS++ AKK EPK+RL R+GL  K + SRKQ KERKNR KK+R
Sbjct:    5 VTIRTRKFMTNRLLQRKQMVIDVLHPGKATVPKTEIREKLAKMYKTTP-DVIFVFGFRTHFGGGKTTGFGMIYDSLDYAKKNEPKHRLARHGLYEKKKTSRKQRKERKNRMKKVR 118
[Close]
BLAST of EH406355 vs. ExPASy Swiss-Prot
Match: RS24_BOVIN (40S ribosomal protein S24 OS=Bos taurus GN=RPS24 PE=2 SV=2)

HSP 1 Score: 158.303 bits (399), Expect = 3.365e-38
Identity = 79/115 (68.70%), Postives = 93/115 (80.87%), Query Frame = 3 
Query:   48 ITIRFRKFMTNRLLSRKQFVIDVLHPGRANVSKAELKEKLARMYDVRDANAIFVFKFRTHFGGGKSTGFGLIYDSVESAKKFEPKYRLIRNGLATKVEKSRKQMKERKNRQKKIR 392
            +TIR RKFMTNRLL RKQ VIDVLHPG+A V K E++EKLA+MY     + IFVF FRTHFGGGK+TGFG+IYDS++ AKK EPK+RL R+GL  K + SRKQ KERKNR KK+R
Sbjct:    5 VTIRTRKFMTNRLLQRKQMVIDVLHPGKATVPKTEIREKLAKMYKTTP-DVIFVFGFRTHFGGGKTTGFGMIYDSLDYAKKNEPKHRLARHGLYEKKKTSRKQRKERKNRMKKVR 118
[Close]
BLAST of EH406355 vs. ExPASy Swiss-Prot
Match: RS24_XENLA (40S ribosomal protein S24 OS=Xenopus laevis GN=rps24 PE=2 SV=1)

HSP 1 Score: 157.147 bits (396), Expect = 7.498e-38
Identity = 78/115 (67.83%), Postives = 93/115 (80.87%), Query Frame = 3 
Query:   48 ITIRFRKFMTNRLLSRKQFVIDVLHPGRANVSKAELKEKLARMYDVRDANAIFVFKFRTHFGGGKSTGFGLIYDSVESAKKFEPKYRLIRNGLATKVEKSRKQMKERKNRQKKIR 392
            +TIR RKFMTNRLL RKQ VIDVLHPG+A V K E++EKLA+MY     + IFVF FRTHFGGGK+TGFG+IYDS++ AKK EPK+RL ++GL  K + SRKQ KERKNR KK+R
Sbjct:    5 VTIRTRKFMTNRLLQRKQMVIDVLHPGKATVPKTEIREKLAKMYKTTP-DVIFVFGFRTHFGGGKTTGFGMIYDSLDYAKKNEPKHRLAKHGLYEKKKTSRKQRKERKNRMKKVR 118
[Close]
BLAST of EH406355 vs. ExPASy Swiss-Prot
Match: RS24_DICDI (40S ribosomal protein S24 OS=Dictyostelium discoideum GN=rps24 PE=3 SV=1)

HSP 1 Score: 155.992 bits (393), Expect = 1.670e-37
Identity = 75/118 (63.56%), Postives = 94/118 (79.66%), Query Frame = 3 
Query:   33 MADKAITIRFRKFMTNRLLSRKQFVIDVLHPGRANVSKAELKEKLARMYDVRDANAIFVFKFRTHFGGGKSTGFGLIYDSVESAKKFEPKYRLIRNGLATKVEKSRKQMKERKNRQKK 386
            M   A+ +R RK +TNRLLSRKQFV++V+HPG+ANVSK +LK  +A+++ V D   IF+F F+T FGGGKSTGFGLIYD++E AKK+EPKYRL R GL TK + SRKQ KE+KNR KK
Sbjct:    1 MDKAAVVVRTRKVLTNRLLSRKQFVVEVVHPGKANVSKKDLKTTIAKLHKVADPETIFLFGFKTDFGGGKSTGFGLIYDNLEIAKKYEPKYRLARAGLYTKPQTSRKQRKEKKNRLKK 118
The following BLAST results are available for this feature:
BLAST of EH406355 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 19
Match NameE-valueIdentityDescription
RS241_ARATH2.098e-5690.0040S ribosomal protein S24-1 OS=Arabidopsis thalian... [more]
RS242_ARATH3.350e-5485.8340S ribosomal protein S24-2 OS=Arabidopsis thalian... [more]
RS24_RAT3.365e-3868.7040S ribosomal protein S24 OS=Rattus norvegicus GN=... [more]
RS24_PONAB3.365e-3868.7040S ribosomal protein S24 OS=Pongo abelii GN=RPS24... [more]
RS24_MOUSE3.365e-3868.7040S ribosomal protein S24 OS=Mus musculus GN=Rps24... [more]
RS24_MESAU3.365e-3868.7040S ribosomal protein S24 OS=Mesocricetus auratus ... [more]
RS24_HUMAN3.365e-3868.7040S ribosomal protein S24 OS=Homo sapiens GN=RPS24... [more]
RS24_BOVIN3.365e-3868.7040S ribosomal protein S24 OS=Bos taurus GN=RPS24 P... [more]
RS24_XENLA7.498e-3867.8340S ribosomal protein S24 OS=Xenopus laevis GN=rps... [more]
RS24_DICDI1.670e-3763.5640S ribosomal protein S24 OS=Dictyostelium discoid... [more]

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Properties
Property NameValue
Genbank descriptionKN0AAB3CC04ZM1 AbsCOv1 Citrus clementina cDNA 5, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>EH406355 ID=EH406355; Name=EH406355; organism=Citrus clementina; type=EST; length=674bp
GATTGCAGTGCAATTGATTCATTGAGACATAAATGGCTGACAAGGCGATC
ACCATCCGATTCAGAAAGTTCATGACCAACAGGCTTCTGTCGAGGAAACA
ATTTGTTATCGATGTTCTGCATCCAGGTCGAGCCAATGTTTCAAAGGCCG
AGTTGAAGGAGAAATTGGCGAGGATGTATGATGTGAGGGATGCGAATGCT
ATATTTGTGTTCAAATTTCGTACACATTTTGGAGGTGGGAAATCAACTGG
GTTTGGCCTCATCTATGACTCTGTTGAGAGTGCAAAGAAGTTTGAGCCCA
AGTACAGGCTAATCAGGAATGGACTGGCTACCAAGGTTGAGAAGTCAAGG
AAGCAGATGAAAGAGAGGAAAAACAGGCAAAAGAAGATCAGAGGTGTCAA
GAAGGCCAAGGCTGAAGCTGGCAAGAAGAAGAAGTGAGGCCTTGGGGCGT
TTAACCTGGCTTCTTCCAACAGCACGAATAGTTCCTTCGCTCTTTCTTTT
AGTTATTAAATAACTAGCGAGTGGCTTAGCTCTTTTGTATTTCTATGAGA
CATTATTATATTTGATGTTTGCTATAATATTAGCACCTGGAGGGAAAATG
TTTCTTAGTGAAATAAAGAGGTACTTTCTCTGAGTCTATTGGTGCTTTTG
GAATAAAATTGTCAAAGCGGTTGA
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