EH406356

Overview
NameEH406356
Unique NameEH406356
TypeEST
OrganismCitrus clementina (Clementine)
Sequence length431
Libraries
Library NameType
AbsCOv1cdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of EH406356 vs. ExPASy Swiss-Prot
Match: RS29_ARATH (40S ribosomal protein S29 OS=Arabidopsis thaliana GN=RPS29A PE=3 SV=2)

HSP 1 Score: 115.161 bits (287), Expect = 1.156e-25
Identity = 48/56 (85.71%), Postives = 50/56 (89.29%), Query Frame = 1
Query:   61 MGHSNVWNSHPKTYGPGPRACRVCGNPHAIIRKYGLMCCRQCFRSNAKEIGFVKYR 228
            MGHSNVWNSHPK YGPG R CRVCGN H +IRKYGL CCRQCFRSNAKEIGF+KYR
Sbjct:    1 MGHSNVWNSHPKKYGPGSRLCRVCGNSHGLIRKYGLNCCRQCFRSNAKEIGFIKYR 56          
BLAST of EH406356 vs. ExPASy Swiss-Prot
Match: RS29_WHEAT (40S ribosomal protein S29 OS=Triticum aestivum GN=RPS29 PE=3 SV=1)

HSP 1 Score: 112.464 bits (280), Expect = 7.493e-25
Identity = 46/56 (82.14%), Postives = 50/56 (89.29%), Query Frame = 1
Query:   61 MGHSNVWNSHPKTYGPGPRACRVCGNPHAIIRKYGLMCCRQCFRSNAKEIGFVKYR 228
            MGHSNVWNSHPK YG G R CRVCGN H +IRKYGLMCCRQCFRS+AK+IGF+KYR
Sbjct:    1 MGHSNVWNSHPKNYGAGSRVCRVCGNSHGLIRKYGLMCCRQCFRSDAKDIGFIKYR 56          
BLAST of EH406356 vs. ExPASy Swiss-Prot
Match: RS29_GRIJA (40S ribosomal protein S29 OS=Griffithsia japonica GN=RPS29 PE=3 SV=1)

HSP 1 Score: 92.4337 bits (228), Expect = 8.024e-19
Identity = 35/56 (62.50%), Postives = 44/56 (78.57%), Query Frame = 1
Query:   61 MGHSNVWNSHPKTYGPGPRACRVCGNPHAIIRKYGLMCCRQCFRSNAKEIGFVKYR 228
            MGH N+W SHP+ YG G R+C++CGN H +IRKY +  CRQCFR  AK+IGF+KYR
Sbjct:    1 MGHQNIWYSHPRKYGKGSRSCKICGNKHGLIRKYSMNICRQCFREYAKDIGFIKYR 56          
BLAST of EH406356 vs. ExPASy Swiss-Prot
Match: RS29_IXOSC (40S ribosomal protein S29 OS=Ixodes scapularis GN=RpS29 PE=3 SV=1)

HSP 1 Score: 85.8853 bits (211), Expect = 7.510e-17
Identity = 35/54 (64.81%), Postives = 40/54 (74.07%), Query Frame = 1
Query:   61 MGHSNVWNSHPKTYGPGPRACRVCGNPHAIIRKYGLMCCRQCFRSNAKEIGFVK 222
            MGH N+W SHP+ YGPG R CRVC N H +IRKYGL  CR+CFR  A +IGF K
Sbjct:    1 MGHENIWYSHPRKYGPGSRYCRVCANHHGLIRKYGLNICRRCFRQYAADIGFKK 54          
BLAST of EH406356 vs. ExPASy Swiss-Prot
Match: RS29_GUITH (40S ribosomal protein S29A OS=Guillardia theta GN=rps29A PE=3 SV=1)

HSP 1 Score: 85.5001 bits (210), Expect = 9.809e-17
Identity = 33/56 (58.93%), Postives = 40/56 (71.43%), Query Frame = 1
Query:   61 MGHSNVWNSHPKTYGPGPRACRVCGNPHAIIRKYGLMCCRQCFRSNAKEIGFVKYR 228
            M H N+WN H +TYG G R CR+CGN   +IRKYGL  CRQCFR  ++ +GF KYR
Sbjct:    1 MSHKNIWNKHSRTYGKGSRGCRICGNRSGLIRKYGLSICRQCFREKSQNLGFDKYR 56          
BLAST of EH406356 vs. ExPASy Swiss-Prot
Match: RS29_PLUXY (40S ribosomal protein S29 OS=Plutella xylostella GN=RpS29 PE=3 SV=1)

HSP 1 Score: 84.7297 bits (208), Expect = 1.673e-16
Identity = 34/54 (62.96%), Postives = 40/54 (74.07%), Query Frame = 1
Query:   61 MGHSNVWNSHPKTYGPGPRACRVCGNPHAIIRKYGLMCCRQCFRSNAKEIGFVK 222
            MGH+N+W SHP+ YG G R+CR C N H +IRKYGL  CRQCFR  A +IGF K
Sbjct:    1 MGHANIWYSHPRKYGQGSRSCRACSNRHGLIRKYGLNICRQCFREYANDIGFKK 54          
BLAST of EH406356 vs. ExPASy Swiss-Prot
Match: RS29_SPOFR (40S ribosomal protein S29 OS=Spodoptera frugiperda GN=RpS29 PE=3 SV=1)

HSP 1 Score: 84.3445 bits (207), Expect = 2.185e-16
Identity = 34/54 (62.96%), Postives = 40/54 (74.07%), Query Frame = 1
Query:   61 MGHSNVWNSHPKTYGPGPRACRVCGNPHAIIRKYGLMCCRQCFRSNAKEIGFVK 222
            MGH+N+W SHP+ YG G R+CR C N H +IRKYGL  CRQCFR  A +IGF K
Sbjct:    1 MGHANIWYSHPRRYGQGSRSCRACSNRHGLIRKYGLNICRQCFREYAHDIGFKK 54          
BLAST of EH406356 vs. ExPASy Swiss-Prot
Match: RS29_SCALT (40S ribosomal protein S29 OS=Scarabaeus laticollis GN=RpS29 PE=3 SV=1)

HSP 1 Score: 84.3445 bits (207), Expect = 2.185e-16
Identity = 34/54 (62.96%), Postives = 39/54 (72.22%), Query Frame = 1
Query:   61 MGHSNVWNSHPKTYGPGPRACRVCGNPHAIIRKYGLMCCRQCFRSNAKEIGFVK 222
            MGH N+W SHP+ YG G R+CR C N H +IRKYGL  CRQCFR  A +IGF K
Sbjct:    1 MGHQNIWYSHPRKYGQGSRSCRACSNRHGLIRKYGLNICRQCFREYANDIGFKK 54          
BLAST of EH406356 vs. ExPASy Swiss-Prot
Match: RS29_BOMMO (40S ribosomal protein S29 OS=Bombyx mori GN=RpS29 PE=3 SV=1)

HSP 1 Score: 83.5741 bits (205), Expect = 3.727e-16
Identity = 34/54 (62.96%), Postives = 40/54 (74.07%), Query Frame = 1
Query:   61 MGHSNVWNSHPKTYGPGPRACRVCGNPHAIIRKYGLMCCRQCFRSNAKEIGFVK 222
            MGH+N+W SHP+ YG G R+CR C N H +IRKYGL  CRQCFR  A +IGF K
Sbjct:    1 MGHANIWYSHPRRYGQGSRSCRSCSNRHGLIRKYGLNICRQCFREYAHDIGFKK 54          
BLAST of EH406356 vs. ExPASy Swiss-Prot
Match: RS29_MAGGR (40S ribosomal protein S29 OS=Magnaporthe grisea GN=RPS29 PE=3 SV=1)

HSP 1 Score: 82.8037 bits (203), Expect = 6.358e-16
Identity = 35/56 (62.50%), Postives = 42/56 (75.00%), Query Frame = 1
Query:   61 MGHSNVWNSHPKTYGPGPRACRVCGNPHAIIRKYGLMCCRQCFRSNAKEIGFVKYR 228
            M H +VWNS P+TYG G R+CRVC +   +IRKYGL  CRQCFR  A +IGFVK+R
Sbjct:    1 MSHDSVWNSRPRTYGKGARSCRVCTHRAGLIRKYGLDICRQCFREKAADIGFVKHR 56          
The following BLAST results are available for this feature:
BLAST of EH406356 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 31
Match NameE-valueIdentityDescription
RS29_ARATH1.156e-2585.7140S ribosomal protein S29 OS=Arabidopsis thaliana ... [more]
RS29_WHEAT7.493e-2582.1440S ribosomal protein S29 OS=Triticum aestivum GN=... [more]
RS29_GRIJA8.024e-1962.5040S ribosomal protein S29 OS=Griffithsia japonica ... [more]
RS29_IXOSC7.510e-1764.8140S ribosomal protein S29 OS=Ixodes scapularis GN=... [more]
RS29_GUITH9.809e-1758.9340S ribosomal protein S29A OS=Guillardia theta GN=... [more]
RS29_PLUXY1.673e-1662.9640S ribosomal protein S29 OS=Plutella xylostella G... [more]
RS29_SPOFR2.185e-1662.9640S ribosomal protein S29 OS=Spodoptera frugiperda... [more]
RS29_SCALT2.185e-1662.9640S ribosomal protein S29 OS=Scarabaeus laticollis... [more]
RS29_BOMMO3.727e-1662.9640S ribosomal protein S29 OS=Bombyx mori GN=RpS29 ... [more]
RS29_MAGGR6.358e-1662.5040S ribosomal protein S29 OS=Magnaporthe grisea GN... [more]

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Properties
Property NameValue
Genbank descriptionKN0AAB3CB12ZM1 AbsCOv1 Citrus clementina cDNA 5, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>EH406356 ID=EH406356; Name=EH406356; organism=Citrus clementina; type=EST; length=431bp
GGCATTGCGGAGAAGAAGTGCGGCAGCAGAGCAGAGCAGGACAGGACAGG
AGAGAAGAAGATGGGTCACTCAAACGTATGGAATTCGCATCCCAAGACCT
ACGGCCCTGGACCTCGTGCTTGCCGCGTTTGCGGGAACCCTCATGCGATT
ATCAGAAAGTACGGCCTCATGTGCTGCAGGCAGTGCTTCCGCAGCAACGC
CAAGGAGATCGGTTTCGTCAAGTACCGCTGAAGAAGTTGGCTGTCAAGGC
TTTGCAGTGGACTGTGGAGCATACCTAGGAATGGAGAAATTTTCAGTTTT
CATGTGATTTCTTTTTAGTTTTTCACAAGTAGCATAAAGCTTGCGAATCA
ATTAGAGCTTGAACTTTGTAGATGGATTTCTTTGCTGTCCTAATATGACT
GCCAATCTTATTACTTCAATGTTCTCTTAAA
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