FC868535

Overview
NameFC868535
Unique NameFC868535
TypeEST
OrganismCitrus clementina (Clementine)
Sequence length683
Libraries
Library NameType
AbioticL1cdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Alignments
Feature NameTypeLocationAnalysis
Ccv1_Contig10735 contig Ccv1_Contig10735:31..713. BLAST: Citrus Unigene V1 Contigs to Prunus persica proteins V1
Homology
BLAST of FC868535 vs. ExPASy Swiss-Prot
Match: SYNC1_ARATH (Asparaginyl-tRNA synthetase, cytoplasmic 1 OS=Arabidopsis thaliana GN=SYNC1 PE=2 SV=1)

HSP 1 Score: 238.81 bits (608), Expect = 2.012e-62
Identity = 124/191 (64.92%), Postives = 153/191 (80.10%), Query Frame = 3
Query:  126 MADNELP-VDQVATMDLNDDA--VQRHQFSDRVLIKSILTRPDGGAGLAGQQVRVGGWVKTGREQGKGSFAFLEVNDGSCPANLQVIVDKDVADLGQLVPTGTCVYVEGMLKNPP--EGTKQKIELRVQKVVDVGMVDPAKYPIPKTKLTLEFLRDRIPFRPRTNTIAAVARIRNALAYATHTFLQKQGFL 683
            MAD  +P   Q+A + L +D   VQR QFS+RVLI++IL RPDGGAGLAGQ VR+GGWVK+GR+QGK +F+FL VNDGSCPANLQV+VD  + D+  LV TGTCV V+G+LK PP  +GT+Q+IEL V KV+DVG VD +KYP+PKTKLTLE LRD +  R RTN+I+AVARIRNALA+ATH+F Q+  FL
Sbjct:    1 MADEIVPPATQLAAVSLENDGSTVQRAQFSNRVLIRTILDRPDGGAGLAGQTVRIGGWVKSGRDQGKRTFSFLAVNDGSCPANLQVMVDPSLYDVSNLVATGTCVTVDGVLKVPPKGKGTQQQIELNVVKVIDVGTVDASKYPLPKTKLTLETLRDVLHLRSRTNSISAVARIRNALAFATHSFFQEHSFL 191          
BLAST of FC868535 vs. ExPASy Swiss-Prot
Match: SYNC3_ARATH (Asparaginyl-tRNA synthetase, cytoplasmic 3 OS=Arabidopsis thaliana GN=SYNC3 PE=2 SV=1)

HSP 1 Score: 231.491 bits (589), Expect = 3.213e-60
Identity = 122/184 (66.30%), Postives = 145/184 (78.80%), Query Frame = 3
Query:  144 PVDQVATMDLNDDA--VQRHQFSDRVLIKSILTRPDGGAGLAGQQVRVGGWVKTGREQGKGSFAFLEVNDGSCPANLQVIVDKDVADLGQLVPTGTCVYVEGMLKNPPE--GTKQKIELRVQKVVDVGMVDPAKYPIPKTKLTLEFLRDRIPFRPRTNTIAAVARIRNALAYATHTFLQKQGFL 683
            P +Q+A  +L +D   VQ+ QFSDRVLI+SIL    GGA LAGQ+VR+GGWVKTGR+QGKG+FAFLEVNDGSCPANLQV+VD  + DL +LV TGTCV V+G+LK PPE  G KQ IEL V+ V+ VG VDP  YP+PKTKLT EFLRD +  R RTN I+AVARIRNALA+ATH+F Q+  FL
Sbjct:    8 PANQLAADNLENDGSTVQKAQFSDRVLIRSIL---GGGAKLAGQKVRIGGWVKTGRQQGKGTFAFLEVNDGSCPANLQVMVDSSLYDLSRLVATGTCVTVDGVLKIPPEGKGLKQSIELSVETVIAVGTVDPTTYPLPKTKLTPEFLRDVLHLRSRTNLISAVARIRNALAFATHSFFQEHSFL 188          
BLAST of FC868535 vs. ExPASy Swiss-Prot
Match: SYNO_ARATH (Asparaginyl-tRNA synthetase, chloroplastic/mitochondrial OS=Arabidopsis thaliana GN=SYNO PE=2 SV=3)

HSP 1 Score: 132.494 bits (332), Expect = 2.031e-30
Identity = 72/166 (43.37%), Postives = 102/166 (61.45%), Query Frame = 3
Query:  198 QFSDRVLIKSILTRPDGGAGLAGQQVRVGGWVKTGREQGKGSFAFLEVNDGSCPANLQVIVDKDVADLGQL----VPTGTCVYVEGMLKNPPEGTKQKIELRVQKVVDVGMVDPAKYPIPKTKLTLEFLRDRIPFRPRTNTIAAVARIRNALAYATHTFLQKQGFL 683
            +F  ++ I  +    D G    GQ + + GWV+T R Q   S  F+E+NDGSC +NLQ ++  D     Q+    + TG  V V+G +    +GTKQK+EL+V+K++ VG  D + YPI K +++ EFLR +   RPRTNT  AVAR+RN LAYATH F Q+ GF+
Sbjct:   87 EFRKKLRIAEVKGGADEGLSRVGQSLNIMGWVRTLRSQS--SVTFIEINDGSCLSNLQCVMTSDAEGYDQVESGSILTGASVSVQGTIV-ASQGTKQKVELKVEKIIVVGECD-SSYPIQKKRVSREFLRTKAHLRPRTNTFGAVARVRNTLAYATHKFFQESGFV 248          
BLAST of FC868535 vs. ExPASy Swiss-Prot
Match: SYN_DESPS (Asparaginyl-tRNA synthetase OS=Desulfotalea psychrophila GN=asnS PE=3 SV=1)

HSP 1 Score: 121.709 bits (304), Expect = 3.585e-27
Identity = 67/141 (47.52%), Postives = 88/141 (62.41%), Query Frame = 3
Query:  267 QQVRVGGWVKTGREQGKGSFAFLEVNDGSCPANLQVIVDKDVADLGQLVP---TGTCVYVEGMLKNPPEGTKQKIELRVQKVVDVGMVDPAKYPIPKTKLTLEFLRDRIPFRPRTNTIAAVARIRNALAYATHTFLQKQGF 680
            Q V V GW++T R+ G   F+FLEVNDGS   N+QVI DK + +  + V    TG  V VEG+LK  P    Q +E+    V  VG  DP  YP+ K + +LEFLR+    RPRTN I+AVAR+R+ L+YA H F Q++GF
Sbjct:   16 QVVTVAGWIRTRRDTG--DFSFLEVNDGSTLINMQVIADKSLGNYEEEVKKLSTGCSVMVEGVLKESP-AKGQSVEVHASSVTVVGWADPETYPLQKKRHSLEFLREISHLRPRTNAISAVARVRSRLSYAVHNFFQEKGF 153          
BLAST of FC868535 vs. ExPASy Swiss-Prot
Match: SYN_SYNFM (Asparaginyl-tRNA synthetase OS=Syntrophobacter fumaroxidans (strain DSM 10017 / MPOB) GN=asnS PE=3 SV=1)

HSP 1 Score: 120.553 bits (301), Expect = 7.987e-27
Identity = 66/142 (46.48%), Postives = 87/142 (61.27%), Query Frame = 3
Query:  264 GQQVRVGGWVKTGREQGKGSFAFLEVNDGSCPANLQVIVDKDVADLGQL---VPTGTCVYVEGMLKNPPEGTKQKIELRVQKVVDVGMVDPAKYPIPKTKLTLEFLRDRIPFRPRTNTIAAVARIRNALAYATHTFLQKQGF 680
            G+ VR  GWV+T R+  K   +F+E+NDGSC  NLQV+ D+   +  QL   + TG  V VEG +   P G  Q IEL+  ++   G  DPA YP+ K + + EFLR     RPRTNTI AV+R+RN L+YA H F Q +GF
Sbjct:   19 GKTVRAQGWVRTKRDS-KAGVSFIELNDGSCLRNLQVVADQGHPEYRQLLESITTGCAVMVEGSIAYSP-GKGQTIELKADRITLYGTADPAVYPLQKKRHSFEFLRQIGHLRPRTNTIGAVSRVRNRLSYAIHQFFQDRGF 158          
BLAST of FC868535 vs. ExPASy Swiss-Prot
Match: SYN_PARUW (Asparaginyl-tRNA synthetase OS=Protochlamydia amoebophila (strain UWE25) GN=asnS PE=3 SV=1)

HSP 1 Score: 119.783 bits (299), Expect = 1.362e-26
Identity = 68/161 (42.24%), Postives = 91/161 (56.52%), Query Frame = 3
Query:  210 RVLIKSILTRPDGGAGLAGQQVRVGGWVKTGREQGKGSFAFLEVNDGSCPANLQVIVDKDVADLGQLV---PTGTCVYVEGMLKNPPEGTKQKIELRVQKVVDVGMVDPAKYPIPKTKLTLEFLRDRIPFRPRTNTIAAVARIRNALAYATHTFLQKQGFL 683
            R  IKS+         L G  + + GWV+T R Q   +F F+E+NDGS  +N Q+I   D+A   QL+    TG  V   G +   P G +Q +E++   +  +G  DP  Y + K + T EFLR     RPRTNTI AV R+RNALA+ATH F QK+GFL
Sbjct:    2 RTKIKSLRGTTPEVRALIGHDITLKGWVRTVRNQK--TFTFIEINDGSTLSNFQIIATPDIAGYDQLINQLSTGVSVSAIGTIVESP-GKEQNLEMQATAITIIGKCDPEVYLLQKKRHTFEFLRSIAHLRPRTNTIGAVTRVRNALAFATHQFFQKRGFL 159          
BLAST of FC868535 vs. ExPASy Swiss-Prot
Match: SYN_SYNY3 (Asparaginyl-tRNA synthetase OS=Synechocystis sp. (strain PCC 6803) GN=asnS PE=3 SV=2)

HSP 1 Score: 118.627 bits (296), Expect = 3.035e-26
Identity = 69/146 (47.26%), Postives = 90/146 (61.64%), Query Frame = 3
Query:  255 GLAGQQVRVGGWVKTGREQGKGSFAFLEVNDGSCPANLQVIVDKDVADLGQLVP---TGTCVYVEGMLKNPPEGTKQKIELRVQKVVDVGMVDPAKYPIPKTKLTLEFLRDRIPFRPRTNTIAAVARIRNALAYATHTFLQKQGFL 683
            G A  QV V GW++T R      F+F+EVNDGS  ANLQV++D  +AD  +L+    TG  + VEG L  P  G  Q++EL+  K+  +G  DP  YP+ K + + EFLR     RPRTNTI AV R+RNA A A H F Q++GFL
Sbjct:   13 GQADDQVMVQGWLRTKRTLK--DFSFVEVNDGSSLANLQVVLDGSLADYDRLLSQLQTGAALVVEGKLA-PSPGKGQRVELKATKLELLGGADPGSYPLQKKRHSFEFLRTIGHLRPRTNTIGAVMRVRNACATAIHQFFQERGFL 155          
BLAST of FC868535 vs. ExPASy Swiss-Prot
Match: SYN_TREDE (Asparaginyl-tRNA synthetase OS=Treponema denticola GN=asnS PE=3 SV=1)

HSP 1 Score: 108.997 bits (271), Expect = 2.405e-23
Identity = 68/161 (42.24%), Postives = 89/161 (55.28%), Query Frame = 3
Query:  216 LIKSILTRPDGGAGLAGQQVRVGGWVKTGREQGKGSFAFLEVNDGSCPANLQVIVDKDVA------DLGQLVPTGTCVYVEGMLKNPPEGTKQKIELRVQKVVDVGMVDPAKYPIPKTKLTLEFLRDRIPFRPRTNTIAAVARIRNALAYATHTFLQKQGF 680
            LIK ILT         GQ + V GWV+T RE    +  F+E+NDGSC A++Q   D+D         L +   TG  V V G L  P     Q++EL+   +   G  D  KYP+ K + ++EFLRD    R RTNT  AVARIR+ +AYA HTF Q++GF
Sbjct:    4 LIKDILTSEP-----KGQAIDVYGWVRTKRETK--NLVFIEINDGSCFASIQATFDRDTGLDNNTEALLKKAGTGVSVKVSGNLV-PSPAAGQRVELQANNIHIFGDADQEKYPLQKKRHSMEFLRDIAHLRARTNTFGAVARIRSQMAYAIHTFFQERGF 156          
BLAST of FC868535 vs. ExPASy Swiss-Prot
Match: SYN_PORGI (Asparaginyl-tRNA synthetase OS=Porphyromonas gingivalis GN=asnS PE=3 SV=1)

HSP 1 Score: 108.227 bits (269), Expect = 4.102e-23
Identity = 58/144 (40.28%), Postives = 83/144 (57.64%), Query Frame = 3
Query:  255 GLAGQQVRVGGWVKTGREQGKGSFAFLEVNDGSCPANLQVIVDKDVADLGQL--VPTGTCVYVEGMLKNPPEGTKQKIELRVQKVVDVGMVDPAKYPIPKTKLTLEFLRDRIPFRPRTNTIAAVARIRNALAYATHTFLQKQGF 680
            GL GQ++ + GWV+T R  G  +  F+ +NDGS   N+Q++ D    D  Q+  + TG C+ V G L    +G  Q +E++   +   G  DPA YP+ K   TLEFLR+    RPRTNT  A+ RIR+ +A A HTF   +G+
Sbjct:   17 GLVGQEINIKGWVRTKR--GNKAVNFIALNDGSTIHNMQIVADLASFDAAQMSQITTGACIGVIGTLVES-QGAGQSVEVQASAIEIYGTADPATYPLQKKGHTLEFLREIAHLRPRTNTFGAIYRIRHHMAIAIHTFFHNKGY 157          
BLAST of FC868535 vs. ExPASy Swiss-Prot
Match: SYN_GEOSL (Asparaginyl-tRNA synthetase OS=Geobacter sulfurreducens GN=asnS PE=3 SV=1)

HSP 1 Score: 108.227 bits (269), Expect = 4.102e-23
Identity = 70/162 (43.21%), Postives = 96/162 (59.26%), Query Frame = 3
Query:  204 SDRVLIKSILTRPDGGAGLAGQQVRVGGWVKTGREQGKGSFAFLEVNDGSCPANLQVIVDKDVADLGQL--VPTGTCVYVEGMLKNPPEGTKQKIELRVQKVVDVGMVDPAKYPIPKTKLTLEFLRDRIPFRPRTNTIAAVARIRNALAYATHTFLQKQGFL 683
            ++R+ I+ IL         AG +V V GWV+T R  GKG  AFL VNDGSC A+LQV+ +  +A+  +L  + TG  V V G++   P    Q +EL   KVV VG  D  +YP+ K + T E+LR     RPR+NT  AV R+R++LA A H F  ++GFL
Sbjct:    2 NERIRIREILAGTP-----AGTEVIVKGWVRTSRV-GKG-VAFLAVNDGSCLASLQVVAEPGLANYHELRGIGTGAAVAVRGIVAESP-AAGQAVELHATKVVVVGGADE-QYPLQKKRHTFEYLRTIAHLRPRSNTFGAVFRVRSSLAQAVHRFFAERGFL 154          
The following BLAST results are available for this feature:
BLAST of FC868535 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 168
Match NameE-valueIdentityDescription
SYNC1_ARATH2.012e-6264.92Asparaginyl-tRNA synthetase, cytoplasmic 1 OS=Arab... [more]
SYNC3_ARATH3.213e-6066.30Asparaginyl-tRNA synthetase, cytoplasmic 3 OS=Arab... [more]
SYNO_ARATH2.031e-3043.37Asparaginyl-tRNA synthetase, chloroplastic/mitocho... [more]
SYN_DESPS3.585e-2747.52Asparaginyl-tRNA synthetase OS=Desulfotalea psychr... [more]
SYN_SYNFM7.987e-2746.48Asparaginyl-tRNA synthetase OS=Syntrophobacter fum... [more]
SYN_PARUW1.362e-2642.24Asparaginyl-tRNA synthetase OS=Protochlamydia amoe... [more]
SYN_SYNY33.035e-2647.26Asparaginyl-tRNA synthetase OS=Synechocystis sp. (... [more]
SYN_TREDE2.405e-2342.24Asparaginyl-tRNA synthetase OS=Treponema denticola... [more]
SYN_PORGI4.102e-2340.28Asparaginyl-tRNA synthetase OS=Porphyromonas gingi... [more]
SYN_GEOSL4.102e-2343.21Asparaginyl-tRNA synthetase OS=Geobacter sulfurred... [more]

Pages

back to top
Properties
Property NameValue
Genbank descriptionC31001F04EF AbioticL1 Citrus clementina cDNA clone C31001F04, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>FC868535 ID=FC868535; Name=FC868535; organism=Citrus clementina; type=EST; length=683bp
AACCAAACCATCACCAAAGCAACGGCCTCAATCCCTGCGAACCAGCGGCC
ACTCAGAATCTTGCTGCTGCTCACAAACTTGCCATTGCTCACGATATATC
TCTCAGGTGCACTGTCTCCCCACCAATGGCAGATAACGAGCTGCCAGTCG
ACCAAGTTGCAACCATGGATTTAAATGATGATGCGGTGCAAAGACACCAA
TTCTCAGACCGTGTTCTGATCAAGTCTATTTTGACTCGACCTGATGGTGG
CGCTGGGCTAGCTGGGCAGCAAGTGCGAGTTGGAGGATGGGTGAAAACAG
GTCGTGAGCAAGGGAAAGGCTCTTTTGCTTTTCTGGAGGTGAATGATGGG
TCATGCCCTGCTAATTTGCAGGTTATTGTGGACAAGGATGTAGCAGATTT
AGGCCAGCTGGTGCCAACTGGCACTTGTGTTTATGTTGAGGGCATGCTTA
AAAACCCTCCTGAGGGGACTAAACAGAAGATTGAGCTTCGGGTTCAGAAA
GTGGTCGATGTGGGTATGGTTGACCCTGCTAAGTACCCTATCCCCAAGAC
AAAGCTCACTCTTGAGTTTTTGAGGGATCGTATTCCTTTTCGGCCCAGGA
CAAACACGATAGCTGCGGTTGCACGAATTCGAAATGCACTTGCTTATGCC
ACTCATACATTCCTTCAGAAGCAAGGGTTTCTC
back to top