FC868589

Overview
NameFC868589
Unique NameFC868589
TypeEST
OrganismCitrus clementina (Clementine)
Sequence length645
Libraries
Library NameType
AbioticL1cdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Alignments
Feature NameTypeLocationAnalysis
FC868589_ssr79 microsatellite FC868589_ssr79:79..96. BLAST: Citrus ESTs to Prunus persica proteins V1
Ccv1_Contig15438 contig Ccv1_Contig15438:38..685. BLAST: Citrus Unigene V1 Contigs to Prunus persica proteins V1
Homology
BLAST of FC868589 vs. ExPASy Swiss-Prot
Match: T184A_MOUSE (Transmembrane protein 184A OS=Mus musculus GN=Tmem184a PE=2 SV=1)

HSP 1 Score: 78.1814 bits (191), Expect = 4.084e-14
Identity = 47/155 (30.32%), Postives = 78/155 (50.32%), Query Frame = 3
Query:  147 SGLCVMLTMNFTMRLLQQHLFYWKNPKEQKAXXXXXLMAPIYAVDSFVGLLDIKGSKPFFTFLDSVKECYEALVIAKFMALMYSYLKISISKNIVPDEIKGREFHHSFPMTLFQPRTVRLDHHTLKLLKYWTWQFVVIRPICSILMITLQLLRIY 611
            SG+ V   +  T   +  HL  +  P+EQ+       + PIYA DS++ LL + G  P++ + DSV++CYEA VI  F+ L + YL     ++ +  EI+G+    S        R +      L+  K  T QF +++P+ +++ I LQ    Y
Sbjct:   62 SGVFVWTALLLTGHQIYSHLRSYTAPREQRFVIRLLFIVPIYAFDSWLSLL-LLGGHPYYVYFDSVRDCYEAFVIYSFLTLCFQYLG---GESAIMAEIRGKPIRSSCFYGTCCLRGMSYSITFLRFCKQATLQFCIVKPVMALITIILQAFDKY 212          
BLAST of FC868589 vs. ExPASy Swiss-Prot
Match: T184A_RAT (Transmembrane protein 184A OS=Rattus norvegicus GN=Tmem184a PE=2 SV=1)

HSP 1 Score: 77.7962 bits (190), Expect = 5.334e-14
Identity = 47/155 (30.32%), Postives = 78/155 (50.32%), Query Frame = 3
Query:  147 SGLCVMLTMNFTMRLLQQHLFYWKNPKEQKAXXXXXLMAPIYAVDSFVGLLDIKGSKPFFTFLDSVKECYEALVIAKFMALMYSYLKISISKNIVPDEIKGREFHHSFPMTLFQPRTVRLDHHTLKLLKYWTWQFVVIRPICSILMITLQLLRIY 611
            SG+ V   +  T   +  HL  +  P+EQ+       + PIYA DS++ LL + G  P++ + DSV++CYEA VI  F+ L + YL     ++ +  EI+G+    S        R +      L+  K  T QF +++P+ +++ I LQ    Y
Sbjct:   62 SGVFVWTALLLTGHQIYSHLRSYTVPREQRFVIRLLFIVPIYAFDSWLSLL-LLGGHPYYVYFDSVRDCYEAFVIYSFLTLCFQYLG---GESAIMAEIRGKPIRSSCFYGTCCLRGMSYSITFLRFCKQATLQFCIVKPVMALITIILQAFDKY 212          
BLAST of FC868589 vs. ExPASy Swiss-Prot
Match: T184C_MOUSE (Transmembrane protein 184C OS=Mus musculus GN=Tmem184c PE=2 SV=1)

HSP 1 Score: 74.7146 bits (182), Expect = 4.516e-13
Identity = 50/171 (29.24%), Postives = 87/171 (50.88%), Query Frame = 3
Query:  147 SGLCVMLTMNFTMRLLQQHLFYWKNPKEQKAXXXXXLMAPIYAVDSFVGLLDIKGSKPFFTFLDSVKECYEALVIAKFMALMYSYLKISISKNIVPDEIKGREFHHSFPMTLFQPRTVRLDHHTLKLLKYWTWQFVVIRPICSILMITLQLLRIYPSW-----LSWTFTII 644
            +G+ ++LT+  ++  + QHL ++  P+ QK       M PIY+VDS+V L+  K       ++D+ +ECYEA VI  FM  + +YL I     I+  E K ++ +H  P+    P    +    L   K    Q+ V+RPI ++  +  ++L +Y         +WT+ +I
Sbjct:   52 AGIFLLLTIPVSLWGILQHLVHYTQPELQKPIIRILWMVPIYSVDSWVALVYPK----IAIYVDTWRECYEAYVIYNFMIFLTNYLTIRFPNLILHLEAKDQQ-NHILPLCCCPPWA--MGEMLLFRCKLGVLQYTVVRPITTVTALVCEILDVYDEGNFGFSNAWTYLVI 215          
BLAST of FC868589 vs. ExPASy Swiss-Prot
Match: T184A_HUMAN (Transmembrane protein 184A OS=Homo sapiens GN=TMEM184A PE=2 SV=1)

HSP 1 Score: 74.7146 bits (182), Expect = 4.516e-13
Identity = 47/155 (30.32%), Postives = 77/155 (49.68%), Query Frame = 3
Query:  147 SGLCVMLTMNFTMRLLQQHLFYWKNPKEQKAXXXXXLMAPIYAVDSFVGLLDIKGSKPFFTFLDSVKECYEALVIAKFMALMYSYLKISISKNIVPDEIKGREFHHSFPMTLFQPRTVRLDHHTLKLLKYWTWQFVVIRPICSILMITLQLLRIY 611
            SG+ V   +  T   +  HL  +  P+EQ+      L+ PIYA DS++ LL + G   ++ + DSV++CYEA VI  F++L + YL     +  +  EI+G+    S        R +      L+  K  T QF +++P+ ++  I LQ    Y
Sbjct:   59 SGIFVWTALVLTCHQIYLHLRSYTVPQEQRYIIRLLLIVPIYAFDSWLSLL-LLGDHQYYVYFDSVRDCYEAFVIYSFLSLCFQYLG---GEGAIMAEIRGKPIKSSCLYGTCCLRGMTYSIGFLRFCKQATLQFCLVKPVMAVTTIILQAFGKY 209          
BLAST of FC868589 vs. ExPASy Swiss-Prot
Match: T184C_BOVIN (Transmembrane protein 184C OS=Bos taurus GN=TMEM184C PE=2 SV=1)

HSP 1 Score: 72.0182 bits (175), Expect = 2.927e-12
Identity = 48/171 (28.07%), Postives = 85/171 (49.71%), Query Frame = 3
Query:  147 SGLCVMLTMNFTMRLLQQHLFYWKNPKEQKAXXXXXLMAPIYAVDSFVGLLDIKGSKPFFTFLDSVKECYEALVIAKFMALMYSYLKISISKNIVPDEIKGREFHHSFPMTLFQPRTVRLDHHTLKLLKYWTWQFVVIRPICSILMITLQLLRIYPSW-----LSWTFTII 644
            +G+ ++LT+  ++ ++ QHL ++  P+ QK       M PIY++DS++ L           ++D+ +ECYEA VI  FM  + +YL       ++  E K ++ H   P+    P T  +    L   K    Q+ V+RP  +I+ +  +LL IY         +WT+ +I
Sbjct:   52 AGIFLLLTIPISLWVILQHLVHYTQPELQKPIIRILWMVPIYSLDSWIAL----KYPSIAIYVDTCRECYEAYVIYNFMGFLTNYLTNRYPNLVLIIEAKDQQKHFP-PLCCCPPWT--MGEVLLFRCKLGVLQYTVVRPFTTIIALVCELLDIYDEGNFSFSNAWTYLVI 215          
BLAST of FC868589 vs. ExPASy Swiss-Prot
Match: T184C_RAT (Transmembrane protein 184C OS=Rattus norvegicus GN=Tmem184c PE=2 SV=1)

HSP 1 Score: 70.8626 bits (172), Expect = 6.521e-12
Identity = 49/171 (28.65%), Postives = 86/171 (50.29%), Query Frame = 3
Query:  147 SGLCVMLTMNFTMRLLQQHLFYWKNPKEQKAXXXXXLMAPIYAVDSFVGLLDIKGSKPFFTFLDSVKECYEALVIAKFMALMYSYLKISISKNIVPDEIKGREFHHSFPMTLFQPRTVRLDHHTLKLLKYWTWQFVVIRPICSILMITLQLLRIYPSW-----LSWTFTII 644
            +G+ ++LT+  +M  + QHL ++  P+ QK       M PIY++DS+V L   K       ++D+ +ECYEA VI  FM  + +YL I     ++  E K ++ +H  P+    P    +    L   K    Q+ V+RPI ++  +  ++L +Y         +WT+ +I
Sbjct:   52 AGIFLLLTIPVSMCGILQHLVHYTQPELQKPIIRILWMVPIYSLDSWVALKYPK----IAIYVDTWRECYEAYVIYNFMIFLTNYLTIRFPNLMLHLEAKDQQ-NHLPPLCCCPPWA--MGEMLLFRCKLGVLQYTVVRPITTVTSLVCEILGVYDEGNFSFSNAWTYLVI 215          
BLAST of FC868589 vs. ExPASy Swiss-Prot
Match: T184A_BOVIN (Transmembrane protein 184A OS=Bos taurus GN=TMEM184A PE=2 SV=1)

HSP 1 Score: 70.0922 bits (170), Expect = 1.112e-11
Identity = 46/155 (29.68%), Postives = 76/155 (49.03%), Query Frame = 3
Query:  147 SGLCVMLTMNFTMRLLQQHLFYWKNPKEQKAXXXXXLMAPIYAVDSFVGLLDIKGSKPFFTFLDSVKECYEALVIAKFMALMYSYLKISISKNIVPDEIKGREFHHSFPMTLFQPRTVRLDHHTLKLLKYWTWQFVVIRPICSILMITLQLLRIY 611
            SG+ V   +  T   +  HL  +  P EQ+       + P+YA DS++ LL + G    + + DSV++CYEA VI  F++L + YL     ++ +  EI+G+    S        R +      L+  K  T QF +++PI +++ I LQ    Y
Sbjct:   49 SGVFVWAALVLTGHQIYLHLRSYTVPHEQRYIIRLLFIVPVYAFDSWLSLL-LLGGHQHYIYFDSVRDCYEAFVIYSFLSLCFQYLG---GESAIMAEIRGKPVRTSCFHGTCCLRGMTYSIGFLRFCKQATLQFCIVKPIMALVTIVLQAFGKY 199          
BLAST of FC868589 vs. ExPASy Swiss-Prot
Match: T184B_HUMAN (Transmembrane protein 184B OS=Homo sapiens GN=TMEM184B PE=1 SV=2)

HSP 1 Score: 69.3218 bits (168), Expect = 1.897e-11
Identity = 45/157 (28.66%), Postives = 76/157 (48.41%), Query Frame = 3
Query:  147 SGLCVMLTMNFTMRLLQQHLFYWKNPKEQKAXXXXXLMAPIYAVDSFVGLLDIKGSKPFFTFLDSVKECYEALVIAKFMALMYSYLKISISKNIVPDEIKGREFHHS--FPMTLFQPRTVRLDHHTLKLLKYWTWQFVVIRPICSILMITLQLLRIY 611
            SG  V   +  T   +  HL  +  P EQ+       + PIYA DS++ LL     + ++ +  +V++CYEALVI  F++L Y YL     ++ +  EI+G+    S  +       +T  +    L+  K  T QF V++P+ ++  + LQ    Y
Sbjct:   50 SGFFVWTALLITCHQIYMHLRCYSCPNEQRYIVRILFIVPIYAFDSWLSLLFFTNDQ-YYVYFGTVRDCYEALVIYNFLSLCYEYLG---GESSIMSEIRGKPIESSCMYGTCCLWGKTYSIGF--LRFCKQATLQFCVVKPLMAVSTVVLQAFGKY 200          
BLAST of FC868589 vs. ExPASy Swiss-Prot
Match: T184B_BOVIN (Transmembrane protein 184B OS=Bos taurus GN=TMEM184B PE=2 SV=1)

HSP 1 Score: 69.3218 bits (168), Expect = 1.897e-11
Identity = 45/157 (28.66%), Postives = 76/157 (48.41%), Query Frame = 3
Query:  147 SGLCVMLTMNFTMRLLQQHLFYWKNPKEQKAXXXXXLMAPIYAVDSFVGLLDIKGSKPFFTFLDSVKECYEALVIAKFMALMYSYLKISISKNIVPDEIKGREFHHS--FPMTLFQPRTVRLDHHTLKLLKYWTWQFVVIRPICSILMITLQLLRIY 611
            SG  V   +  T   +  HL  +  P EQ+       + PIYA DS++ LL     + ++ +  +V++CYEALVI  F++L Y YL     ++ +  EI+G+    S  +       +T  +    L+  K  T QF V++P+ ++  + LQ    Y
Sbjct:   50 SGFFVWTALLITCHQIYMHLRCYSCPNEQRYIVRILFIVPIYAFDSWLSLLFFTNDQ-YYVYFGTVRDCYEALVIYNFLSLCYEYLG---GESSIMSEIRGKPIESSCMYGTCCLWGKTYSIGF--LRFCKQATLQFCVVKPLMAVSTVVLQAFGKY 200          
BLAST of FC868589 vs. ExPASy Swiss-Prot
Match: T184C_PONAB (Transmembrane protein 184C OS=Pongo abelii GN=TMEM184C PE=2 SV=1)

HSP 1 Score: 68.9366 bits (167), Expect = 2.478e-11
Identity = 48/171 (28.07%), Postives = 84/171 (49.12%), Query Frame = 3
Query:  147 SGLCVMLTMNFTMRLLQQHLFYWKNPKEQKAXXXXXLMAPIYAVDSFVGLLDIKGSKPFFTFLDSVKECYEALVIAKFMALMYSYLKISISKNIVPDEIKGREFHHSFPMTLFQPRTVRLDHHTLKLLKYWTWQFVVIRPICSILMITLQLLRIYPSW-----LSWTFTII 644
            +G+ ++LT+  ++ ++ QHL ++  P+ QK       M PIY++DS++ L           ++D+ +ECYEA VI  FM  + +YL       ++  E K ++ H  FP     P    +    L   K    Q+ V+RP  +I+ +  +LL IY         +WT+ +I
Sbjct:   52 AGIFLLLTIPISLWVILQHLVHYTQPELQKPIIRILWMVPIYSLDSWIAL----KYPGIAIYVDTCRECYEAYVIYNFMGFLTNYLTNRYPNLVLILEAKDQQKH--FPPLCCCPPWA-MGEVLLFRCKLGVLQYTVVRPFTTIVALICELLGIYDEGNFSFSNAWTYLVI 215          
The following BLAST results are available for this feature:
BLAST of FC868589 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 13
Match NameE-valueIdentityDescription
T184A_MOUSE4.084e-1430.32Transmembrane protein 184A OS=Mus musculus GN=Tmem... [more]
T184A_RAT5.334e-1430.32Transmembrane protein 184A OS=Rattus norvegicus GN... [more]
T184C_MOUSE4.516e-1329.24Transmembrane protein 184C OS=Mus musculus GN=Tmem... [more]
T184A_HUMAN4.516e-1330.32Transmembrane protein 184A OS=Homo sapiens GN=TMEM... [more]
T184C_BOVIN2.927e-1228.07Transmembrane protein 184C OS=Bos taurus GN=TMEM18... [more]
T184C_RAT6.521e-1228.65Transmembrane protein 184C OS=Rattus norvegicus GN... [more]
T184A_BOVIN1.112e-1129.68Transmembrane protein 184A OS=Bos taurus GN=TMEM18... [more]
T184B_HUMAN1.897e-1128.66Transmembrane protein 184B OS=Homo sapiens GN=TMEM... [more]
T184B_BOVIN1.897e-1128.66Transmembrane protein 184B OS=Bos taurus GN=TMEM18... [more]
T184C_PONAB2.478e-1128.07Transmembrane protein 184C OS=Pongo abelii GN=TMEM... [more]

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Properties
Property NameValue
Genbank descriptionC31002C08EF AbioticL1 Citrus clementina cDNA clone C31002C08, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>FC868589 ID=FC868589; Name=FC868589; organism=Citrus clementina; type=EST; length=645bp
ACAATCAATCACAAATCCCAAGACGCAGATACAAGAGTCAGTCACGAGAG
ACACAGTTTGAATCACCATCATCATCACCGTCGTCGTCGTCGTCGTGAGC
GATGGATCTGAGCACGATGAGTCGGGCGCAAATCACATTGATGGGATCGG
GATTGTGCGTGATGCTGACAATGAATTTCACGATGCGGCTCTTGCAACAG
CATCTCTTTTACTGGAAGAATCCGAAGGAGCAGAAGGCTATCATTATCAT
AATCCTTATGGCTCCCATTTACGCTGTTGATTCTTTTGTAGGTTTGTTGG
ATATCAAGGGTAGCAAACCCTTCTTCACCTTTTTGGACTCCGTCAAGGAA
TGCTACGAGGCTCTGGTTATTGCTAAGTTCATGGCTTTAATGTACAGTTA
TTTGAAGATTTCGATTAGTAAGAACATTGTGCCGGATGAAATTAAAGGAA
GAGAGTTTCATCATTCCTTTCCCATGACTCTTTTCCAGCCACGCACTGTC
CGCCTGGATCACCATACATTGAAGCTCCTCAAATACTGGACGTGGCAGTT
TGTTGTTATCCGCCCAATATGTTCCATATTGATGATTACACTGCAACTTC
TTCGGATATATCCCTCTTGGTTGAGCTGGACATTTACAATCATTC
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