FC868591

Overview
NameFC868591
Unique NameFC868591
TypeEST
OrganismCitrus clementina (Clementine)
Sequence length716
Libraries
Library NameType
AbioticL1cdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Alignments
Feature NameTypeLocationAnalysis
Ccv1_Contig10435 contig Ccv1_Contig10435:18..734. BLAST: Citrus Unigene V1 Contigs to Prunus persica proteins V1
Homology
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BLAST of FC868591 vs. ExPASy Swiss-Prot
Match: PME12_ARATH (Probable pectinesterase/pectinesterase inhibitor 12 OS=Arabidopsis thaliana GN=PME12 PE=2 SV=1)

HSP 1 Score: 190.274 bits (482), Expect = 8.891e-48
Identity = 104/183 (56.83%), Postives = 134/183 (73.22%), Query Frame = 1 
Query:  136 SSISNFCKSTPHPDACFESLKLXXXXXXXXXXXXFLLQTLQMAISEAGKVTNLLAGAG-SSNIVEKQRGTIQDCKELHQITLSALQKSLPKIR-AAHDAKTLSDARAYLSAALTNKNTCLESLNSASGYLKQPLVNSIISTYRYVSNSLSALPKPATTE-----GKQHRRRLMG-FPEWLSRK 660
            +S ++FCK+TP+PDACF SLKL            FLLQTLQ A+SEAGK+T+LL+GAG S+N+VE QRG++QDCK+LH IT S L++S+ KI+   +D++ L+DARAYLSAALTNK TCLE L SASG LK  LV S  +TY+++SNSLSALPK   T      G    RRL+G FP+W+ +K
Sbjct:   35 TSATSFCKNTPYPDACFTSLKLSISINISPNILSFLLQTLQTALSEAGKLTDLLSGAGVSNNLVEGQRGSLQDCKDLHHITSSFLKRSISKIQDGVNDSRKLADARAYLSAALTNKITCLEGLESASGPLKPKLVTSFTTTYKHISNSLSALPKQRRTTNPKTGGNTKNRRLLGLFPDWVYKK 217
The following BLAST results are available for this feature:
BLAST of FC868591 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 1
Match NameE-valueIdentityDescription
PME12_ARATH8.891e-4856.83Probable pectinesterase/pectinesterase inhibitor 1... [more]
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Properties
Property NameValue
Genbank descriptionC31002C11EF AbioticL1 Citrus clementina cDNA clone C31002C11, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>FC868591 ID=FC868591; Name=FC868591; organism=Citrus clementina; type=EST; length=716bp
CACTCTGCCTTCGTCATATCGGCTGTCATGGCTGCTTCCTCCTTTCTGAA
ACTCACCTTGCTCCTCTTCACAATCTCCATCTCCATCACAGCTACTCTAA
GCACTCCTTCAACAACTTCTCTACACACCAACATATCTTCAATAAGCAAT
TTTTGCAAAAGCACTCCGCACCCAGATGCTTGTTTTGAGTCATTGAAGCT
CTCTATATCAATCAATATCAGTCCAAACATCATCAACTTCTTGCTTCAAA
CTCTCCAAATGGCCATTTCCGAAGCCGGGAAGGTCACCAATCTATTGGCC
GGTGCAGGCAGCTCTAATATTGTCGAGAAACAGAGAGGCACAATCCAAGA
TTGTAAAGAACTTCACCAAATCACATTATCCGCTTTACAGAAATCTCTCC
CGAAAATCCGTGCAGCTCATGATGCTAAAACCTTATCCGATGCAAGAGCA
TATCTCAGTGCAGCTTTAACAAATAAGAATACTTGTTTAGAGAGCCTTAA
CTCTGCTTCAGGTTATTTGAAGCAACCTTTAGTGAACTCTATAATAAGTA
CTTACAGGTATGTGAGCAACTCCCTGTCAGCACTTCCAAAGCCAGCTACG
ACAGAAGGCAAACAACACCGTCGCCGCCTAATGGGATTTCCAGAATGGTT
GTCAAGAAAGATCGCCGGGATCTGCAGAGCTCCGATGACGATAATGAGTA
TGACCTGAGTCAAGTG
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