FC868615

Overview
NameFC868615
Unique NameFC868615
TypeEST
OrganismCitrus clementina (Clementine)
Sequence length587
Libraries
Library NameType
AbioticL1cdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Alignments
Feature NameTypeLocationAnalysis
Ccv1_Contig13823 contig Ccv1_Contig13823:729..1314. BLAST: Citrus Unigene V1 Contigs to Prunus persica proteins V1
Homology
BLAST of FC868615 vs. ExPASy Swiss-Prot
Match: SC61A_DICDI (Protein transport protein Sec61 subunit alpha OS=Dictyostelium discoideum GN=sec61a PE=3 SV=1)

HSP 1 Score: 245.358 bits (625), Expect = 1.597e-64
Identity = 119/191 (62.30%), Postives = 143/191 (74.87%), Query Frame = 2
Query:    2 IWKAFSPTTINSGPGAEFEGAVIALFHLLITKQNKVGALREAFYRQNLPNITNLLATVLVFLIVVYFQGFKVVLPVRSKNARGQQGAYPIKLFYTSNMPIILQSALVSNLYFISQLLYRKYSGNFFVNLLGKWKESEYSGHSIPVGGLAYYVTAPSKLG*YGSQSFPCSVLPGFYAYCLCSFLETWIEVPG 574
            +WK FSPTT++ G G EFEGAVIALFHLL+T+ +KV AL+EAFYRQNLPNITNLLATVL+F++V+YFQGF+V LPV+S    GQQG YPIKLFYTSN+PIILQSALVSNLYFISQLLYR++  N  VNL G W+ SEYS   IPV GL YY+++P+ +    +  F       F       F + WIEV G
Sbjct:  193 VWKTFSPTTVSVGKGTEFEGAVIALFHLLLTRNDKVRALKEAFYRQNLPNITNLLATVLIFMVVIYFQGFRVDLPVKSTRVSGQQGTYPIKLFYTSNIPIILQSALVSNLYFISQLLYRRFPDNILVNLFGAWRTSEYSQQMIPVSGLTYYISSPNNMSAVLADPFHALFYITFMLTSCALFSKVWIEVSG 383          
BLAST of FC868615 vs. ExPASy Swiss-Prot
Match: SC61A_GADOC (Protein transport protein Sec61 subunit alpha OS=Gadus ogac GN=sec61a PE=2 SV=3)

HSP 1 Score: 230.72 bits (587), Expect = 4.072e-60
Identity = 115/193 (59.59%), Postives = 138/193 (71.50%), Query Frame = 2
Query:    2 IWKAFSPTTINSGPGAEFEGAVIALFHLLITKQNKVGALREAFYRQNLPNITNLLATVLVFLIVVYFQGFKVVLPVRSKNARGQQGAYPIKLFYTSNMPIILQSALVSNLYFISQLLYRKYSGNFFVNLLGKWKESEYSG--HSIPVGGLAYYVTAPSKLG*YGSQSFPCSVLPGFYAYCLCSFLETWIEVPG 574
            +WKAFSPTT+N+G G EFEGA+IALFHLL T+ +KV ALREAFYRQNLPN+ NL+ATV VF +V+YFQGF+V LP++S   RGQ   YPIKLFYTSN+PIILQSALVSNLY ISQ+L  ++SGNF VNLLG W ++   G   + PVGGL YY + P   G         S+   F       F +TWIEV G
Sbjct:  192 VWKAFSPTTVNTGRGTEFEGAIIALFHLLATRTDKVRALREAFYRQNLPNLMNLIATVFVFAVVIYFQGFRVDLPIKSARYRGQYNTYPIKLFYTSNIPIILQSALVSNLYVISQMLSTRFSGNFLVNLLGTWSDTSTGGPARAYPVGGLCYYFSPPESFGSVLDDPVHASIYIVFMLGSCAFFSKTWIEVSG 384          
BLAST of FC868615 vs. ExPASy Swiss-Prot
Match: S61A2_MOUSE (Protein transport protein Sec61 subunit alpha isoform 2 OS=Mus musculus GN=Sec61a2 PE=2 SV=3)

HSP 1 Score: 230.335 bits (586), Expect = 5.318e-60
Identity = 118/193 (61.14%), Postives = 140/193 (72.54%), Query Frame = 2
Query:    2 IWKAFSPTTINSGPGAEFEGAVIALFHLLITKQNKVGALREAFYRQNLPNITNLLATVLVFLIVVYFQGFKVVLPVRSKNARGQQGAYPIKLFYTSNMPIILQSALVSNLYFISQLLYRKYSGNFFVNLLGKWKESEYSG--HSIPVGGLAYYVTAPSKLG*YGSQSFPCSVLPGFYAYCLCSFLETWIEVPG 574
            +WKAFSPTTIN+G G EFEGAVIALFHLL T+ +KV ALREAFYRQNLPN+ NL+ATV VF +V+YFQGF+V LP++S   RGQ  +YPIKLFYTSN+PIILQSALVSNLY ISQ+L  ++SGNF VNLLG+W +    G   S PVGGL YY++ P  +G          V   F       F +TWIEV G
Sbjct:  192 VWKAFSPTTINTGRGTEFEGAVIALFHLLATRTDKVRALREAFYRQNLPNLMNLIATVFVFAVVIYFQGFRVDLPIKSARYRGQYSSYPIKLFYTSNIPIILQSALVSNLYVISQMLSVRFSGNFLVNLLGQWADVSGGGPARSYPVGGLCYYLSPPESMGAIFEDPVHVVVYIIFMLGSCAFFSKTWIEVSG 384          
BLAST of FC868615 vs. ExPASy Swiss-Prot
Match: S61A2_HUMAN (Protein transport protein Sec61 subunit alpha isoform 2 OS=Homo sapiens GN=SEC61A2 PE=2 SV=3)

HSP 1 Score: 230.335 bits (586), Expect = 5.318e-60
Identity = 118/193 (61.14%), Postives = 140/193 (72.54%), Query Frame = 2
Query:    2 IWKAFSPTTINSGPGAEFEGAVIALFHLLITKQNKVGALREAFYRQNLPNITNLLATVLVFLIVVYFQGFKVVLPVRSKNARGQQGAYPIKLFYTSNMPIILQSALVSNLYFISQLLYRKYSGNFFVNLLGKWKESEYSG--HSIPVGGLAYYVTAPSKLG*YGSQSFPCSVLPGFYAYCLCSFLETWIEVPG 574
            +WKAFSPTTIN+G G EFEGAVIALFHLL T+ +KV ALREAFYRQNLPN+ NL+ATV VF +V+YFQGF+V LP++S   RGQ  +YPIKLFYTSN+PIILQSALVSNLY ISQ+L  ++SGNF VNLLG+W +    G   S PVGGL YY++ P  +G          V   F       F +TWIEV G
Sbjct:  192 VWKAFSPTTINTGRGTEFEGAVIALFHLLATRTDKVRALREAFYRQNLPNLMNLIATVFVFAVVIYFQGFRVDLPIKSARYRGQYSSYPIKLFYTSNIPIILQSALVSNLYVISQMLSVRFSGNFLVNLLGQWADVSGGGPARSYPVGGLCYYLSPPESMGAIFEDPVHVVVYIIFMLGSCAFFSKTWIEVSG 384          
BLAST of FC868615 vs. ExPASy Swiss-Prot
Match: S61A2_BOVIN (Protein transport protein Sec61 subunit alpha isoform 2 OS=Bos taurus GN=SEC61A2 PE=2 SV=3)

HSP 1 Score: 230.335 bits (586), Expect = 5.318e-60
Identity = 118/193 (61.14%), Postives = 140/193 (72.54%), Query Frame = 2
Query:    2 IWKAFSPTTINSGPGAEFEGAVIALFHLLITKQNKVGALREAFYRQNLPNITNLLATVLVFLIVVYFQGFKVVLPVRSKNARGQQGAYPIKLFYTSNMPIILQSALVSNLYFISQLLYRKYSGNFFVNLLGKWKESEYSG--HSIPVGGLAYYVTAPSKLG*YGSQSFPCSVLPGFYAYCLCSFLETWIEVPG 574
            +WKAFSPTTIN+G G EFEGAVIALFHLL T+ +KV ALREAFYRQNLPN+ NL+ATV VF +V+YFQGF+V LP++S   RGQ  +YPIKLFYTSN+PIILQSALVSNLY ISQ+L  ++SGNF VNLLG+W +    G   S PVGGL YY++ P  +G          V   F       F +TWIEV G
Sbjct:  192 VWKAFSPTTINTGRGTEFEGAVIALFHLLATRTDKVRALREAFYRQNLPNLMNLIATVFVFAVVIYFQGFRVDLPIKSARYRGQYSSYPIKLFYTSNIPIILQSALVSNLYVISQMLSVRFSGNFLVNLLGQWADVSGGGPARSYPVGGLCYYLSPPESMGAIFEDPVHVVVYIIFMLGSCAFFSKTWIEVSG 384          
BLAST of FC868615 vs. ExPASy Swiss-Prot
Match: S61A2_ONCMY (Protein transport protein Sec61 subunit alpha isoform B OS=Oncorhynchus mykiss GN=sec61ab PE=2 SV=3)

HSP 1 Score: 229.565 bits (584), Expect = 9.071e-60
Identity = 115/193 (59.59%), Postives = 138/193 (71.50%), Query Frame = 2
Query:    2 IWKAFSPTTINSGPGAEFEGAVIALFHLLITKQNKVGALREAFYRQNLPNITNLLATVLVFLIVVYFQGFKVVLPVRSKNARGQQGAYPIKLFYTSNMPIILQSALVSNLYFISQLLYRKYSGNFFVNLLGKWKESEYSG--HSIPVGGLAYYVTAPSKLG*YGSQSFPCSVLPGFYAYCLCSFLETWIEVPG 574
            +WKAFSPTT+N+G G EFEGA+IALFHLL T+ +KV ALREAFYRQNLPN+ NLLATV VF +V+YFQGF+V LP++S   RGQ   YPIKLFYTSN+PIILQSALVSNLY ISQ+L  ++SGNF VNLLG W ++   G   + PVGGL YY + P   G         ++   F       F +TWIEV G
Sbjct:  192 VWKAFSPTTVNTGRGTEFEGAIIALFHLLATRTDKVRALREAFYRQNLPNLMNLLATVFVFGVVIYFQGFRVDLPIKSARYRGQYNTYPIKLFYTSNIPIILQSALVSNLYVISQMLSTRFSGNFLVNLLGTWSDTSSGGPARAYPVGGLCYYFSPPESFGSVLDDPIHAAIYICFMLGSCAFFSKTWIEVSG 384          
BLAST of FC868615 vs. ExPASy Swiss-Prot
Match: S61A1_ONCMY (Protein transport protein Sec61 subunit alpha isoform A OS=Oncorhynchus mykiss GN=sec61aa PE=2 SV=3)

HSP 1 Score: 229.18 bits (583), Expect = 1.185e-59
Identity = 113/193 (58.55%), Postives = 139/193 (72.02%), Query Frame = 2
Query:    2 IWKAFSPTTINSGPGAEFEGAVIALFHLLITKQNKVGALREAFYRQNLPNITNLLATVLVFLIVVYFQGFKVVLPVRSKNARGQQGAYPIKLFYTSNMPIILQSALVSNLYFISQLLYRKYSGNFFVNLLGKWKESEYSG--HSIPVGGLAYYVTAPSKLG*YGSQSFPCSVLPGFYAYCLCSFLETWIEVPG 574
            +WKAFSPTT+N+G G EFEGA+IALFHLL T+ +KV ALREAFYRQNLPN+ NL+ATV VF +V+YFQGF+V LP++S   RGQ   YPIKLFYTSN+PIILQSALVSNLY ISQ+L  ++SGNF VNLLG W ++   G   + PVGGL Y+++ P   G         ++   F       F +TWIEV G
Sbjct:  192 VWKAFSPTTVNTGRGTEFEGAIIALFHLLATRTDKVRALREAFYRQNLPNLLNLIATVFVFAVVIYFQGFRVDLPIKSARYRGQYNTYPIKLFYTSNIPIILQSALVSNLYVISQMLSTRFSGNFLVNLLGTWSDTSTGGPARAYPVGGLCYFLSPPESFGSVLDDPIHAAIYIVFMLGSCAFFSKTWIEVSG 384          
BLAST of FC868615 vs. ExPASy Swiss-Prot
Match: S61A1_DANRE (Protein transport protein Sec61 subunit alpha-like 1 OS=Danio rerio GN=sec61al1 PE=2 SV=3)

HSP 1 Score: 229.18 bits (583), Expect = 1.185e-59
Identity = 114/193 (59.07%), Postives = 138/193 (71.50%), Query Frame = 2
Query:    2 IWKAFSPTTINSGPGAEFEGAVIALFHLLITKQNKVGALREAFYRQNLPNITNLLATVLVFLIVVYFQGFKVVLPVRSKNARGQQGAYPIKLFYTSNMPIILQSALVSNLYFISQLLYRKYSGNFFVNLLGKWKESEYSG--HSIPVGGLAYYVTAPSKLG*YGSQSFPCSVLPGFYAYCLCSFLETWIEVPG 574
            +WKAFSPTT+N+G G EFEGA+IALFHLL T+ +KV ALREAFYRQNLPN+ NL+ATV VF +V+YFQGF+V LP++S   RGQ   YPIKLFYTSN+PIILQSALVSNLY ISQ+L  ++SGNF VNLLG W ++   G   + PVGGL YY++ P   G          +   F       F +TWIEV G
Sbjct:  192 VWKAFSPTTVNTGRGTEFEGAIIALFHLLATRTDKVRALREAFYRQNLPNLMNLIATVFVFAVVIYFQGFRVDLPIKSARYRGQYNTYPIKLFYTSNIPIILQSALVSNLYVISQMLSTRFSGNFLVNLLGTWSDTSSGGPARAYPVGGLCYYLSPPESFGSVLDDPVHAVIYIVFMLGSCAFFSKTWIEVSG 384          
BLAST of FC868615 vs. ExPASy Swiss-Prot
Match: SC61A_BORSA (Protein transport protein Sec61 subunit alpha OS=Boreogadus saida GN=sec61a PE=2 SV=3)

HSP 1 Score: 228.794 bits (582), Expect = 1.547e-59
Identity = 113/193 (58.55%), Postives = 139/193 (72.02%), Query Frame = 2
Query:    2 IWKAFSPTTINSGPGAEFEGAVIALFHLLITKQNKVGALREAFYRQNLPNITNLLATVLVFLIVVYFQGFKVVLPVRSKNARGQQGAYPIKLFYTSNMPIILQSALVSNLYFISQLLYRKYSGNFFVNLLGKWKESEYSG--HSIPVGGLAYYVTAPSKLG*YGSQSFPCSVLPGFYAYCLCSFLETWIEVPG 574
            +WKAFSPTT+N+G G EFEGA+IALFHLL T+ +KV ALREAFYRQNLPN+ NL+ATV VF +V+YFQGF+V LP++S   RGQ   YPIKLFYTSN+PIILQSALVSNLY ISQ+L  ++SGNF VNLLG W ++   G   + PVGGL Y+++ P   G         ++   F       F +TWIEV G
Sbjct:  192 VWKAFSPTTVNTGRGTEFEGAIIALFHLLATRTDKVRALREAFYRQNLPNLMNLIATVFVFAVVIYFQGFRVDLPIKSARYRGQYNTYPIKLFYTSNIPIILQSALVSNLYVISQMLSTRFSGNFIVNLLGTWSDTSTGGPARAYPVGGLCYFLSPPESFGSVLDDPVHAAIYIVFMLGSCAFFSKTWIEVSG 384          
BLAST of FC868615 vs. ExPASy Swiss-Prot
Match: S61A2_DANRE (Protein transport protein Sec61 subunit alpha-like 2 OS=Danio rerio GN=sec61al2 PE=2 SV=3)

HSP 1 Score: 228.794 bits (582), Expect = 1.547e-59
Identity = 113/193 (58.55%), Postives = 138/193 (71.50%), Query Frame = 2
Query:    2 IWKAFSPTTINSGPGAEFEGAVIALFHLLITKQNKVGALREAFYRQNLPNITNLLATVLVFLIVVYFQGFKVVLPVRSKNARGQQGAYPIKLFYTSNMPIILQSALVSNLYFISQLLYRKYSGNFFVNLLGKWKESEYSG--HSIPVGGLAYYVTAPSKLG*YGSQSFPCSVLPGFYAYCLCSFLETWIEVPG 574
            +WKAFSPTT+N+G G EFEGA+IALFHLL T+ +KV ALREAFYRQNLPN+ NL+AT+ VF +V+YFQGF+V LP++S   RGQ   YPIKLFYTSN+PIILQSALVSNLY ISQ+L  ++SGNF VNLLG W ++   G   + PVGGL YY++ P   G          +   F       F +TWIEV G
Sbjct:  192 VWKAFSPTTVNTGRGTEFEGAIIALFHLLATRTDKVRALREAFYRQNLPNLMNLIATIFVFAVVIYFQGFRVDLPIKSARYRGQYNTYPIKLFYTSNIPIILQSALVSNLYVISQMLSTRFSGNFLVNLLGTWSDTSTGGPARAYPVGGLCYYLSPPESFGTVLEDPIHAIIYIIFMLGSCAFFSKTWIEVSG 384          
The following BLAST results are available for this feature:
BLAST of FC868615 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 41
Match NameE-valueIdentityDescription
SC61A_DICDI1.597e-6462.30Protein transport protein Sec61 subunit alpha OS=D... [more]
SC61A_GADOC4.072e-6059.59Protein transport protein Sec61 subunit alpha OS=G... [more]
S61A2_MOUSE5.318e-6061.14Protein transport protein Sec61 subunit alpha isof... [more]
S61A2_HUMAN5.318e-6061.14Protein transport protein Sec61 subunit alpha isof... [more]
S61A2_BOVIN5.318e-6061.14Protein transport protein Sec61 subunit alpha isof... [more]
S61A2_ONCMY9.071e-6059.59Protein transport protein Sec61 subunit alpha isof... [more]
S61A1_ONCMY1.185e-5958.55Protein transport protein Sec61 subunit alpha isof... [more]
S61A1_DANRE1.185e-5959.07Protein transport protein Sec61 subunit alpha-like... [more]
SC61A_BORSA1.547e-5958.55Protein transport protein Sec61 subunit alpha OS=B... [more]
S61A2_DANRE1.547e-5958.55Protein transport protein Sec61 subunit alpha-like... [more]

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Properties
Property NameValue
Genbank descriptionC31002F10EF AbioticL1 Citrus clementina cDNA clone C31002F10, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>FC868615 ID=FC868615; Name=FC868615; organism=Citrus clementina; type=EST; length=587bp
TATTTGGAAAGCTTTTAGCCCCACAACCATAAACAGTGGCCCCGGAGCTG
AATTCGAGGGTGCTGTTATTGCTCTGTTTCATCTGCTGATAACCAAGCAA
AACAAAGTTGGGGCTCTTCGAGAGGCTTTCTATCGGCAAAACCTTCCCAA
TATTACTAATTTGCTTGCTACAGTCCTCGTATTCCTTATTGTTGTCTACT
TTCAAGGTTTCAAAGTGGTGTTGCCCGTGAGATCAAAAAATGCCCGTGGG
CAACAGGGTGCTTATCCAATTAAGCTATTCTACACATCCAACATGCCTAT
CATTCTCCAATCTGCACTTGTCTCAAATCTGTATTTCATCTCTCAGTTGC
TCTACAGGAAGTACAGTGGCAATTTCTTTGTTAATCTGTTAGGGAAGTGG
AAGGAATCTGAATATTCTGGCCACTCTATTCCAGTTGGTGGCCTAGCTTA
TTATGTCACTGCACCCAGCAAGCTTGGCTGATATGGCAGCCAATCCTTTC
CATGCTCTGTTCTACCTGGTTTTTATGCTTACTGCTTGTGCTCTTTTCTC
GAAACTTGGATTGAAGTTCCGGGTCTTCTGCCCGGGA
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