FC868650
Overview
Libraries
Analyses
This EST is derived from or has results from the following analyses
Homology
BLAST of FC868650 vs. ExPASy Swiss-Prot
Match: CB23_SOLLC (Chlorophyll a-b binding protein 13, chloroplastic OS=Solanum lycopersicum GN=CAB13 PE=1 SV=1) HSP 1 Score: 257.299 bits (656), Expect = 5.467e-68 Identity = 130/188 (69.15%), Postives = 144/188 (76.60%), Query Frame = 1 Query: 118 LRATPFLGQSRTTANALKDVVPMGNAKYTMVISW*P*PTPSAFLSLFVSVFREIH*RYCCVQGNELWYGPDRVKYLGPFSAQTPSYLTGEFPGDYGWDTAGLSADPEAFARNRALEVIHGRWAMLGALGCITPEVLEKWLRVDFKEPVWFKAGAQIFSEGGLDYLAKHYLVHAQSILAVL*FQVVLMG 681 ++ATPFLGQ++ AN L+DVV MG+A++TM N+LWYGPDRVKYLGPFSAQTPSYL GEFPGDYGWDTAGLSADPEAFA+NRALEVIHGRWAMLGALGCI PEVLEKW++VDFKEPVWFKAG+QIFS+GGLDYL LVHAQSILAVL FQVVLMG Sbjct: 14 VKATPFLGQTKN-ANPLRDVVAMGSARFTM--------------------------------SNDLWYGPDRVKYLGPFSAQTPSYLNGEFPGDYGWDTAGLSADPEAFAKNRALEVIHGRWAMLGALGCIFPEVLEKWVKVDFKEPVWFKAGSQIFSDGGLDYLGNPNLVHAQSILAVLGFQVVLMG 168
BLAST of FC868650 vs. ExPASy Swiss-Prot
Match: CB23_HORVU (Chlorophyll a-b binding protein of LHCII type III, chloroplastic OS=Hordeum vulgare GN=LHBC PE=2 SV=1) HSP 1 Score: 239.58 bits (610), Expect = 1.180e-62 Identity = 124/187 (66.31%), Postives = 136/187 (72.73%), Query Frame = 1 Query: 127 TPFL-GQSRT-TANALKDVVPMGNAKYTMVISW*P*PTPSAFLSLFVSVFREIH*RYCCVQGNELWYGPDRVKYLGPFSAQTPSYLTGEFPGDYGWDTAGLSADPEAFARNRALEVIHGRWAMLGALGCITPEVLEKWLRVDFKEPVWFKAGAQIFSEGGLDYLAKHYLVHAQSILAVL*FQVVLMG 681 TPFL GQ R +A+ L+D+ N + TM GN+LWYGPDRVKYLGPFSAQTPSYL GEFPGDYGWDTAGLSADPEAFARNRALEVIHGRWAMLGALGC+ PEVL+KW+ V+FKEPVWFKAG+QIFSEGGLDYL LVHAQSILAVL FQV+LMG Sbjct: 17 TPFLSGQGRAASASPLRDIAAATNGRITM--------------------------------GNDLWYGPDRVKYLGPFSAQTPSYLNGEFPGDYGWDTAGLSADPEAFARNRALEVIHGRWAMLGALGCVFPEVLQKWVGVEFKEPVWFKAGSQIFSEGGLDYLGNPNLVHAQSILAVLGFQVLLMG 171
BLAST of FC868650 vs. ExPASy Swiss-Prot
Match: CB23_ORYSJ (Chlorophyll a-b binding protein, chloroplastic OS=Oryza sativa subsp. japonica GN=RCABP89 PE=2 SV=1) HSP 1 Score: 202.216 bits (513), Expect = 2.087e-51 Identity = 99/123 (80.49%), Postives = 103/123 (83.74%), Query Frame = 1 Query: 313 LWYGPDRVKYLGPFSAQTPSYLTGEFPGDYGWDTAGLSADPEAFARNRALEVIHGRWAMLGALGCITPEVLEKWLRVDFKEPVWFKAGAQIFSEGGLDYLAKHYLVHAQSILAVL*FQVVLMG 681 +WYGPDR KYLGPFS QTPSYLTGEFPGDYGWDTAGLSADPE FARNR LEVIH RWAMLGALGC+ PE+L K V F E VWFKAGAQIFSEGGLDYL LVHAQSILA+ QVVLMG Sbjct: 46 IWYGPDRPKYLGPFSEQTPSYLTGEFPGDYGWDTAGLSADPETFARNRELEVIHSRWAMLGALGCVFPEILSK-NGVKFGEAVWFKAGAQIFSEGGLDYLGNPNLVHAQSILAIWAVQVVLMG 167
BLAST of FC868650 vs. ExPASy Swiss-Prot
Match: CB23_ORYSI (Chlorophyll a-b binding protein, chloroplastic OS=Oryza sativa subsp. indica GN=OsI_012078 PE=2 SV=1) HSP 1 Score: 202.216 bits (513), Expect = 2.087e-51 Identity = 99/123 (80.49%), Postives = 103/123 (83.74%), Query Frame = 1 Query: 313 LWYGPDRVKYLGPFSAQTPSYLTGEFPGDYGWDTAGLSADPEAFARNRALEVIHGRWAMLGALGCITPEVLEKWLRVDFKEPVWFKAGAQIFSEGGLDYLAKHYLVHAQSILAVL*FQVVLMG 681 +WYGPDR KYLGPFS QTPSYLTGEFPGDYGWDTAGLSADPE FARNR LEVIH RWAMLGALGC+ PE+L K V F E VWFKAGAQIFSEGGLDYL LVHAQSILA+ QVVLMG Sbjct: 46 IWYGPDRPKYLGPFSEQTPSYLTGEFPGDYGWDTAGLSADPETFARNRELEVIHSRWAMLGALGCVFPEILSK-NGVKFGEAVWFKAGAQIFSEGGLDYLGNPNLVHAQSILAIWAVQVVLMG 167
BLAST of FC868650 vs. ExPASy Swiss-Prot
Match: CB2A_SPIOL (Chlorophyll a-b binding protein, chloroplastic OS=Spinacia oleracea PE=1 SV=1) HSP 1 Score: 197.593 bits (501), Expect = 5.141e-50 Identity = 96/128 (75.00%), Postives = 106/128 (82.81%), Query Frame = 1 Query: 298 VQGNELWYGPDRVKYLGPFSAQTPSYLTGEFPGDYGWDTAGLSADPEAFARNRALEVIHGRWAMLGALGCITPEVLEKWLRVDFKEPVWFKAGAQIFSEGGLDYLAKHYLVHAQSILAVL*FQVVLMG 681 VQ + WYGPDRVKYLGPFS ++PSYLTGEFPGDYGWDTAGLSADPE FA+NR LEVIH RWAMLGALGC+ PE+L + V F E VWFKAG+QIFSEGGLDYL LVHAQSILA+ QV+LMG Sbjct: 45 VQSSSPWYGPDRVKYLGPFSGESPSYLTGEFPGDYGWDTAGLSADPETFAKNRELEVIHCRWAMLGALGCVFPELLAR-NGVKFGEAVWFKAGSQIFSEGGLDYLGNPSLVHAQSILAIWACQVILMG 171
BLAST of FC868650 vs. ExPASy Swiss-Prot
Match: CB24_SOLLC (Chlorophyll a-b binding protein 4, chloroplastic OS=Solanum lycopersicum GN=CAB4 PE=2 SV=1) HSP 1 Score: 196.438 bits (498), Expect = 1.145e-49 Identity = 97/123 (78.86%), Postives = 102/123 (82.93%), Query Frame = 1 Query: 313 LWYGPDRVKYLGPFSAQTPSYLTGEFPGDYGWDTAGLSADPEAFARNRALEVIHGRWAMLGALGCITPEVLEKWLRVDFKEPVWFKAGAQIFSEGGLDYLAKHYLVHAQSILAVL*FQVVLMG 681 +WYG DR KYLGPFS QTPSYLTGEFPGDYGWDTAGLSADPE FARNR LEVIH RWAMLGALGC+ PE+L K V F E VWFKAG+QIFSEGGLDYL LVHAQSILA+ QVVLMG Sbjct: 48 IWYGEDRPKYLGPFSEQTPSYLTGEFPGDYGWDTAGLSADPETFARNRELEVIHCRWAMLGALGCVFPEILSK-NGVKFGEAVWFKAGSQIFSEGGLDYLGNPNLVHAQSILAIWACQVVLMG 169
BLAST of FC868650 vs. ExPASy Swiss-Prot
Match: CB23_TOBAC (Chlorophyll a-b binding protein 36, chloroplastic OS=Nicotiana tabacum GN=CAB36 PE=3 SV=1) HSP 1 Score: 196.438 bits (498), Expect = 1.145e-49 Identity = 97/123 (78.86%), Postives = 102/123 (82.93%), Query Frame = 1 Query: 313 LWYGPDRVKYLGPFSAQTPSYLTGEFPGDYGWDTAGLSADPEAFARNRALEVIHGRWAMLGALGCITPEVLEKWLRVDFKEPVWFKAGAQIFSEGGLDYLAKHYLVHAQSILAVL*FQVVLMG 681 +WYG DR KYLGPFS QTPSYLTGEFPGDYGWDTAGLSADPE FARNR LEVIH RWAMLGALGC+ PE+L K V F E VWFKAG+QIFSEGGLDYL L+HAQSILAV QVVLMG Sbjct: 48 IWYGEDRPKYLGPFSEQTPSYLTGEFPGDYGWDTAGLSADPETFARNRELEVIHCRWAMLGALGCVFPEILSK-NGVKFGEAVWFKAGSQIFSEGGLDYLGNPNLIHAQSILAVWASQVVLMG 169
BLAST of FC868650 vs. ExPASy Swiss-Prot
Match: CB21_CUCSA (Chlorophyll a-b binding protein of LHCII type I, chloroplastic (Fragment) OS=Cucumis sativus PE=2 SV=1) HSP 1 Score: 196.438 bits (498), Expect = 1.145e-49 Identity = 96/128 (75.00%), Postives = 103/128 (80.47%), Query Frame = 1 Query: 298 VQGNELWYGPDRVKYLGPFSAQTPSYLTGEFPGDYGWDTAGLSADPEAFARNRALEVIHGRWAMLGALGCITPEVLEKWLRVDFKEPVWFKAGAQIFSEGGLDYLAKHYLVHAQSILAVL*FQVVLMG 681 V WYGPDRVKYLGPFS + PSYLTGEFPGDYGWDTAGLSADPE FA+NR LEVIH RWAMLGALGC+ PE+L + V F E VWFKAG+QIFSEGGLDYL LVHAQSILA+ QVVLMG Sbjct: 33 VSSGSPWYGPDRVKYLGPFSGEPPSYLTGEFPGDYGWDTAGLSADPETFAKNRELEVIHSRWAMLGALGCVFPELLSR-NGVKFGEAVWFKAGSQIFSEGGLDYLGNPSLVHAQSILAIWACQVVLMG 159
BLAST of FC868650 vs. ExPASy Swiss-Prot
Match: CB215_PEA (Chlorophyll a-b binding protein 215, chloroplastic OS=Pisum sativum GN=CAB215 PE=1 SV=1) HSP 1 Score: 196.438 bits (498), Expect = 1.145e-49 Identity = 96/123 (78.05%), Postives = 102/123 (82.93%), Query Frame = 1 Query: 313 LWYGPDRVKYLGPFSAQTPSYLTGEFPGDYGWDTAGLSADPEAFARNRALEVIHGRWAMLGALGCITPEVLEKWLRVDFKEPVWFKAGAQIFSEGGLDYLAKHYLVHAQSILAVL*FQVVLMG 681 +WYGPDR KYLGPFS Q PSYLTGEFPGDYGWDTAGLSADPE FARNR LEVIH RWAMLGALGC PE+LEK V F E VWFKAG+QIF+EGGLDYL L+HAQSILA+ QVVLMG Sbjct: 48 IWYGPDRPKYLGPFSEQIPSYLTGEFPGDYGWDTAGLSADPETFARNRELEVIHSRWAMLGALGCTFPELLEK-NGVKFGEAVWFKAGSQIFAEGGLDYLGNPNLIHAQSILAIWATQVVLMG 169
BLAST of FC868650 vs. ExPASy Swiss-Prot
Match: CB26_PETSP (Chlorophyll a-b binding protein 37, chloroplastic OS=Petunia sp. GN=CAB37 PE=3 SV=1) HSP 1 Score: 196.052 bits (497), Expect = 1.496e-49 Identity = 96/123 (78.05%), Postives = 102/123 (82.93%), Query Frame = 1 Query: 313 LWYGPDRVKYLGPFSAQTPSYLTGEFPGDYGWDTAGLSADPEAFARNRALEVIHGRWAMLGALGCITPEVLEKWLRVDFKEPVWFKAGAQIFSEGGLDYLAKHYLVHAQSILAVL*FQVVLMG 681 +WYG DR KYLGPFS QTPSYLTGEFPGDYGWDTAGLSADPE FARNR LEVIH RWAMLGALGC+ PE+L K V F E VWFKAG+QIFSEGGLDYL L+HAQSILA+ QVVLMG Sbjct: 48 IWYGEDRPKYLGPFSEQTPSYLTGEFPGDYGWDTAGLSADPETFARNRELEVIHCRWAMLGALGCVFPEILSK-NGVTFGEAVWFKAGSQIFSEGGLDYLGNPNLIHAQSILAIWAAQVVLMG 169 The following BLAST results are available for this feature:
BLAST of FC868650 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt) Total hits: 63
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Sequences
The
following sequences are available for this feature:
EST sequence >FC868650 ID=FC868650; Name=FC868650; organism=Citrus clementina; type=EST; length=683bpback to top |