FC868696

Overview
NameFC868696
Unique NameFC868696
TypeEST
OrganismCitrus clementina (Clementine)
Sequence length725
Libraries
Library NameType
AbioticL1cdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Alignments
Feature NameTypeLocationAnalysis
Ccv1_Contig15311 contig Ccv1_Contig15311:153..877. BLAST: Citrus Unigene V1 Contigs to Prunus persica proteins V1
Homology
BLAST of FC868696 vs. ExPASy Swiss-Prot
Match: VP241_ARATH (Vacuolar protein sorting-associated protein 24 homolog 1 OS=Arabidopsis thaliana GN=VPS24-1 PE=2 SV=1)

HSP 1 Score: 353.984 bits (907), Expect = 4.761e-97
Identity = 181/229 (79.04%), Postives = 207/229 (90.39%), Query Frame = 1
Query:   31 MEKVMNMIKPKPNPQQLLRDWQRKLRQECRNIERQIRDIQREEKNVQKAIKDAAKRNDLSSAKSLAQELVRSRKTVNRLYENKAQMNSISMHLGESVAIARTVGHLNKSAEVMKLVNNLMKAPEVAATMQEFSKEMTKAGVIEEFVNDAVDTALDSXXXXXXXXXXVDKVLTAIAGETAAQLPEAVRKERVKQSAQTSRAAQEEDAVAEGIDDEKELEENRARLCQXRS 717
            ME+VMN+IKPKP+P+QLLRDWQRKLRQECRNIERQIRDIQ+EE+NVQKAIK+AAKRND+ SAK+LA+E+V SR+TVNRLYENKAQMNSISMHLGESVAIARTVGHL+KSAEVMKLVNNLMKAP++AATMQEFSKEMTKAGVIEEFVN+A+D ALDS          VDKVLTAIAGETAA+LP AVRKER+K  AQ +  ++EE+AVAEG+DDE+ELEE RARL + RS
Sbjct:    1 MERVMNIIKPKPDPKQLLRDWQRKLRQECRNIERQIRDIQKEERNVQKAIKEAAKRNDMVSAKALAKEIVSSRRTVNRLYENKAQMNSISMHLGESVAIARTVGHLSKSAEVMKLVNNLMKAPQMAATMQEFSKEMTKAGVIEEFVNEAIDNALDSEDMEEEIDEEVDKVLTAIAGETAAELPVAVRKERIKVPAQKASTSREEEAVAEGVDDEEELEEIRARLAKVRS 229          
BLAST of FC868696 vs. ExPASy Swiss-Prot
Match: VP242_ARATH (Putative vacuolar protein sorting-associated protein 24 homolog 2 OS=Arabidopsis thaliana GN=VPS24-2 PE=2 SV=1)

HSP 1 Score: 248.44 bits (633), Expect = 2.817e-65
Identity = 131/198 (66.16%), Postives = 156/198 (78.79%), Query Frame = 1
Query:  124 IERQIRDIQREEKNVQKAIKDAAKRNDLSSAKSLAQELVRSRKTVNRLYENKAQMNSISMHLGESVAIARTVGHLNKSAEVMKLVNNLMKAPEVAATMQEFSKEMTKAGVIEEFVNDAVDTALDSXXXXXXXXXXVDKVLTAIAGETAAQLPEAVRKERVKQSAQTSRAAQEEDAVAEGIDDEKELEENRARLCQXRS 717
            I+  + DI+REE+NV KAIKD+ KRNDL +AK+LA+E+V SR+TV RLYENKAQ+NSISMHLGES+A A TVG+L+KS EVMKLVN+LMKAPE+A TMQ FSKEMTK GVIEEFV+DAVD ALDS          VDKVLTAIAGETAA+LPEAVRK+++   AQ +     EDA+ EG+D E+ELE  R RL   RS
Sbjct:    3 IKSLLSDIEREERNVHKAIKDSVKRNDLVTAKALAREIVSSRRTVKRLYENKAQVNSISMHLGESIATAVTVGNLSKSGEVMKLVNSLMKAPEIAVTMQAFSKEMTKTGVIEEFVSDAVDNALDSEDIEEEIEEEVDKVLTAIAGETAAELPEAVRKQKMNVPAQKAETLHGEDAIVEGVDAEEELEAIRYRLANVRS 200          
BLAST of FC868696 vs. ExPASy Swiss-Prot
Match: CHMP3_MOUSE (Charged multivesicular body protein 3 OS=Mus musculus GN=Vps24 PE=1 SV=3)

HSP 1 Score: 164.466 bits (415), Expect = 5.351e-40
Identity = 87/216 (40.28%), Postives = 131/216 (60.65%), Query Frame = 1
Query:   70 PQQLLRDWQRKLRQECRNIERQIRDIQREEKNVQKAIKDAAKRNDLSSAKSLAQELVRSRKTVNRLYENKAQMNSISMHLGESVAIARTVGHLNKSAEVMKLVNNLMKAPEVAATMQEFSKEMTKAGVIEEFVNDAVDTALDSXXXXXXXXXXVDKVLTAIAGETAAQLPEAVRKERVKQSAQTSRAAQEEDAVAEGIDDEKELEENRARLCQXRS 717
            P++L+ +W  K+R+E R ++RQIRDIQREE+ V++++KDAAK+        LA+E++RSRK V++LY +KA MNS+ M +   +A+ R  G L KS EVMK + +L+K PE+ ATM+E SKEM KAG+IEE + D  ++  D           +D++L  I      + P  V     +     + AA EE    E  +DE++LE  ++RL   RS
Sbjct:   12 PKELVNEWSLKIRKEMRVVDRQIRDIQREEEKVKRSVKDAAKKGQKEVCVVLAKEMIRSRKAVSKLYASKAHMNSVLMGMKNQLAVLRVAGSLQKSTEVMKAMQSLVKIPEIQATMRELSKEMMKAGIIEEMLEDTFESMDDQEEMEEAAEMEIDRILFEITAGALGKAPSKVTDALPEPEPAGAMAASEE---GEEEEDEEDLEAMQSRLATLRS 224          
BLAST of FC868696 vs. ExPASy Swiss-Prot
Match: CHMP3_RAT (Charged multivesicular body protein 3 OS=Rattus norvegicus GN=Vps24 PE=1 SV=3)

HSP 1 Score: 164.081 bits (414), Expect = 6.988e-40
Identity = 87/216 (40.28%), Postives = 130/216 (60.19%), Query Frame = 1
Query:   70 PQQLLRDWQRKLRQECRNIERQIRDIQREEKNVQKAIKDAAKRNDLSSAKSLAQELVRSRKTVNRLYENKAQMNSISMHLGESVAIARTVGHLNKSAEVMKLVNNLMKAPEVAATMQEFSKEMTKAGVIEEFVNDAVDTALDSXXXXXXXXXXVDKVLTAIAGETAAQLPEAVRKERVKQSAQTSRAAQEEDAVAEGIDDEKELEENRARLCQXRS 717
            P++L+ +W  K+R+E R ++RQIRDIQREE+ V++++KDAAK+        LA+E++RSRK V++LY +KA MNS+ M +   +A+ R  G L KS EVMK + +L+K PE+ ATM+E SKEM KAG+IEE + D  ++  D           +D++L  I      + P  V     +     + AA E D      DDE++LE  ++RL   RS
Sbjct:   12 PKELVNEWSLKIRKEMRVVDRQIRDIQREEEKVKRSVKDAAKKGQKEVCVVLAKEMIRSRKAVSKLYASKAHMNSVLMGMKNQLAVLRVAGSLQKSTEVMKAMQSLVKIPEIQATMRELSKEMMKAGIIEEMLEDTFESMDDQEEMEEAAEMEIDRILFEITAGALGKAPSKVTDALPEPEPAGAMAASEGDEE----DDEEDLEAMQSRLATLRS 223          
BLAST of FC868696 vs. ExPASy Swiss-Prot
Match: CHMP3_PONAB (Charged multivesicular body protein 3 OS=Pongo abelii GN=VPS24 PE=2 SV=3)

HSP 1 Score: 160.614 bits (405), Expect = 7.726e-39
Identity = 84/216 (38.89%), Postives = 130/216 (60.19%), Query Frame = 1
Query:   70 PQQLLRDWQRKLRQECRNIERQIRDIQREEKNVQKAIKDAAKRNDLSSAKSLAQELVRSRKTVNRLYENKAQMNSISMHLGESVAIARTVGHLNKSAEVMKLVNNLMKAPEVAATMQEFSKEMTKAGVIEEFVNDAVDTALDSXXXXXXXXXXVDKVLTAIAGETAAQLPEAVRKERVKQSAQTSRAAQEEDAVAEGIDDEKELEENRARLCQXRS 717
            P++L+ +W  K+R+E R ++RQIRDIQREE+ V++++KDAAK+        LA+E++RSRK V++LY +KA MNS+ M +   +A+ R  G L KS EVMK + +L+K PE+ ATM+E SKEM KAG+IEE + D  ++  D           +D++L  I      + P  V     +     + AA E++      ++E+ LE  ++RL   RS
Sbjct:   12 PKELVNEWSLKIRKEMRVVDRQIRDIQREEEKVKRSVKDAAKKGQKDVCVVLAKEMIRSRKAVSKLYASKAHMNSVLMGMKNQLAVLRVAGSLQKSTEVMKAMQSLVKIPEIQATMRELSKEMMKAGIIEEMLEDTFESMDDQEEMEEEAEMEIDRILFEITAGALGKAPSKVTDALPEPEPSGAMAASEDEE-----EEEEALEAMQSRLATLRS 222          
BLAST of FC868696 vs. ExPASy Swiss-Prot
Match: CHMP3_MACFA (Charged multivesicular body protein 3 OS=Macaca fascicularis GN=VPS24 PE=2 SV=3)

HSP 1 Score: 160.614 bits (405), Expect = 7.726e-39
Identity = 84/216 (38.89%), Postives = 130/216 (60.19%), Query Frame = 1
Query:   70 PQQLLRDWQRKLRQECRNIERQIRDIQREEKNVQKAIKDAAKRNDLSSAKSLAQELVRSRKTVNRLYENKAQMNSISMHLGESVAIARTVGHLNKSAEVMKLVNNLMKAPEVAATMQEFSKEMTKAGVIEEFVNDAVDTALDSXXXXXXXXXXVDKVLTAIAGETAAQLPEAVRKERVKQSAQTSRAAQEEDAVAEGIDDEKELEENRARLCQXRS 717
            P++L+ +W  K+R+E R ++RQIRDIQREE+ V++++KDAAK+        LA+E++RSRK V++LY +KA MNS+ M +   +A+ R  G L KS EVMK + +L+K PE+ ATM+E SKEM KAG+IEE + D  ++  D           +D++L  I      + P  V     +     + AA +E+      ++E+ LE  ++RL   RS
Sbjct:   12 PKELVNEWSLKIRKEMRVVDRQIRDIQREEEKVKRSVKDAAKKGQKDVCVVLAKEMIRSRKAVSKLYASKAHMNSVLMGMKNQLAVLRVAGSLQKSTEVMKAMQSLVKIPEIRATMRELSKEMMKAGIIEEMLEDTFESMDDQEEMEEAAEMEIDRILFEITAGALGKAPSKVTDALPEPEPSGAMAASDEEE-----EEEEALEAMQSRLATLRS 222          
BLAST of FC868696 vs. ExPASy Swiss-Prot
Match: CHMP3_HUMAN (Charged multivesicular body protein 3 OS=Homo sapiens GN=VPS24 PE=1 SV=3)

HSP 1 Score: 159.844 bits (403), Expect = 1.318e-38
Identity = 84/216 (38.89%), Postives = 130/216 (60.19%), Query Frame = 1
Query:   70 PQQLLRDWQRKLRQECRNIERQIRDIQREEKNVQKAIKDAAKRNDLSSAKSLAQELVRSRKTVNRLYENKAQMNSISMHLGESVAIARTVGHLNKSAEVMKLVNNLMKAPEVAATMQEFSKEMTKAGVIEEFVNDAVDTALDSXXXXXXXXXXVDKVLTAIAGETAAQLPEAVRKERVKQSAQTSRAAQEEDAVAEGIDDEKELEENRARLCQXRS 717
            P++L+ +W  K+R+E R ++RQIRDIQREE+ V++++KDAAK+        LA+E++RSRK V++LY +KA MNS+ M +   +A+ R  G L KS EVMK + +L+K PE+ ATM+E SKEM KAG+IEE + D  ++  D           +D++L  I      + P  V     +     + AA E++      ++E+ LE  ++RL   RS
Sbjct:   12 PKELVNEWSLKIRKEMRVVDRQIRDIQREEEKVKRSVKDAAKKGQKDVCIVLAKEMIRSRKAVSKLYASKAHMNSVLMGMKNQLAVLRVAGSLQKSTEVMKAMQSLVKIPEIQATMRELSKEMMKAGIIEEMLEDTFESMDDQEEMEEEAEMEIDRILFEITAGALGKAPSKVTDALPEPEPPGAMAASEDEE-----EEEEALEAMQSRLATLRS 222          
BLAST of FC868696 vs. ExPASy Swiss-Prot
Match: CHMP3_BOVIN (Charged multivesicular body protein 3 OS=Bos taurus GN=VPS24 PE=2 SV=4)

HSP 1 Score: 159.844 bits (403), Expect = 1.318e-38
Identity = 84/216 (38.89%), Postives = 130/216 (60.19%), Query Frame = 1
Query:   70 PQQLLRDWQRKLRQECRNIERQIRDIQREEKNVQKAIKDAAKRNDLSSAKSLAQELVRSRKTVNRLYENKAQMNSISMHLGESVAIARTVGHLNKSAEVMKLVNNLMKAPEVAATMQEFSKEMTKAGVIEEFVNDAVDTALDSXXXXXXXXXXVDKVLTAIAGETAAQLPEAVRKERVKQSAQTSRAAQEEDAVAEGIDDEKELEENRARLCQXRS 717
            P++L+ +W  K+R+E R ++RQIRDIQREE+ V++++KDAAK+        LA+E++RSRK V++LY +KA MNS+ M +   +A+ R  G L KS EVMK + +L+K PE+ ATM+E SKEM KAG+IEE + D  ++  D           +D++L  I      + P  V     +     + AA E++      ++E+ LE  ++RL   RS
Sbjct:   12 PKELVNEWSLKIRKEMRVVDRQIRDIQREEEKVKRSVKDAAKKGQKDVCVVLAKEMIRSRKAVSKLYASKAHMNSVLMGMKNQLAVLRVAGSLQKSTEVMKAMQSLVKIPEIQATMRELSKEMMKAGIIEEMLEDTFESMDDQEEMEEAAEMEIDRILFEITAGALGKAPSKVTDALPEPEPLGAMAASEDEE-----EEEEALEAMQSRLATLRS 222          
BLAST of FC868696 vs. ExPASy Swiss-Prot
Match: CHMP3_DANRE (Charged multivesicular body protein 3 OS=Danio rerio GN=vps24 PE=2 SV=3)

HSP 1 Score: 159.458 bits (402), Expect = 1.721e-38
Identity = 86/216 (39.81%), Postives = 134/216 (62.04%), Query Frame = 1
Query:   70 PQQLLRDWQRKLRQECRNIERQIRDIQREEKNVQKAIKDAAKRNDLSSAKSLAQELVRSRKTVNRLYENKAQMNSISMHLGESVAIARTVGHLNKSAEVMKLVNNLMKAPEVAATMQEFSKEMTKAGVIEEFVNDAVDTALDSXXXXXXXXXXVDKVLTAIAGETAAQLPEAVRKERVKQSAQTSRAAQEEDAVAEGIDDEKELEENRARLCQXRS 717
            P+ L+ +W  K+R+E R I+RQIRDIQREE+ V+++IKDAAK+        LA+E+++S++ +N+LY +KAQMNS+ + +   +++ R  G L KS EVMK + +L+K PE+ ATM++ SKEM KAG+IEE + D ++   D           VDK+L  I      + P  V  +     A  + AA EE++     ++E+E+EE ++RL   RS
Sbjct:   12 PKDLINEWSLKIRKEMRVIDRQIRDIQREEEKVKRSIKDAAKKGQKDVCIILAKEMIQSKRAINKLYASKAQMNSVLLSMKNQLSVLRVAGALQKSTEVMKAMQSLVKIPEIQATMRDLSKEMMKAGIIEEMLEDTLEGMDDEEEMEEAAEAEVDKILFEITAGALGKAPSKV-TDLPDPVAIGATAAPEEES-----EEEEEIEEMQSRLAALRS 221          
BLAST of FC868696 vs. ExPASy Swiss-Prot
Match: CHMP3_XENLA (Charged multivesicular body protein 3 OS=Xenopus laevis GN=vps24 PE=2 SV=3)

HSP 1 Score: 157.147 bits (396), Expect = 8.542e-38
Identity = 83/216 (38.43%), Postives = 129/216 (59.72%), Query Frame = 1
Query:   70 PQQLLRDWQRKLRQECRNIERQIRDIQREEKNVQKAIKDAAKRNDLSSAKSLAQELVRSRKTVNRLYENKAQMNSISMHLGESVAIARTVGHLNKSAEVMKLVNNLMKAPEVAATMQEFSKEMTKAGVIEEFVNDAVDTALDSXXXXXXXXXXVDKVLTAIAGETAAQLPEAVRKERVKQSAQTSRAAQEEDAVAEGIDDEKELEENRARLCQXRS 717
            P+ L+ +W  K+R+E R I+RQIRDIQRE++ V+++IK++AK+ +  +   LA+E+V+S+K VN+LY +KA MNS+ M +   +A+ R  G L KS EVMK + NL+K PE+ ATM+E SKEM KAG+IEE + D  +   D           +D++L  +      + P  V     +     + AA +E       ++E++LE   +RL   RS
Sbjct:   12 PKDLVNEWSLKIRKEMRVIDRQIRDIQREQEKVKRSIKESAKKGNREACVILAKEVVQSKKAVNKLYASKAHMNSVLMSMKNQLAVLRVSGSLQKSTEVMKAMQNLVKLPEIQATMRELSKEMMKAGIIEEMLEDTFEGMEDQDEMEEQAEMEIDRILFEVTAGALGKAPSKVTDALPEPEITGAMAASDE-------EEEEDLEAMHSRLAALRS 220          
The following BLAST results are available for this feature:
BLAST of FC868696 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 34
Match NameE-valueIdentityDescription
VP241_ARATH4.761e-9779.04Vacuolar protein sorting-associated protein 24 hom... [more]
VP242_ARATH2.817e-6566.16Putative vacuolar protein sorting-associated prote... [more]
CHMP3_MOUSE5.351e-4040.28Charged multivesicular body protein 3 OS=Mus muscu... [more]
CHMP3_RAT6.988e-4040.28Charged multivesicular body protein 3 OS=Rattus no... [more]
CHMP3_PONAB7.726e-3938.89Charged multivesicular body protein 3 OS=Pongo abe... [more]
CHMP3_MACFA7.726e-3938.89Charged multivesicular body protein 3 OS=Macaca fa... [more]
CHMP3_HUMAN1.318e-3838.89Charged multivesicular body protein 3 OS=Homo sapi... [more]
CHMP3_BOVIN1.318e-3838.89Charged multivesicular body protein 3 OS=Bos tauru... [more]
CHMP3_DANRE1.721e-3839.81Charged multivesicular body protein 3 OS=Danio rer... [more]
CHMP3_XENLA8.542e-3838.43Charged multivesicular body protein 3 OS=Xenopus l... [more]

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Properties
Property NameValue
Genbank descriptionC31003F05EF AbioticL1 Citrus clementina cDNA clone C31003F05, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>FC868696 ID=FC868696; Name=FC868696; organism=Citrus clementina; type=EST; length=725bp
GGAGAAAAATTAGAAAAAAAAGCTCAGGAAATGGAAAAAGTTATGAACAT
GATAAAGCCAAAGCCTAATCCGCAACAGCTGTTGAGGGATTGGCAACGTA
AGCTTCGCCAAGAGTGCCGGAACATTGAGCGCCAAATTCGAGATATACAG
AGAGAAGAGAAAAATGTGCAGAAAGCAATTAAAGATGCTGCCAAGAGAAA
CGACCTGAGCTCTGCCAAGTCTCTGGCTCAGGAACTTGTCAGATCTAGAA
AGACAGTTAACCGTCTCTATGAAAATAAGGCACAAATGAACTCAATATCG
ATGCACCTAGGAGAAAGTGTAGCGATTGCTCGTACTGTGGGGCATTTGAA
CAAGAGTGCTGAGGTTATGAAACTTGTCAACAATCTCATGAAGGCACCAG
AGGTAGCTGCTACAATGCAAGAGTTCAGCAAAGAAATGACCAAGGCTGGA
GTAATTGAGGAGTTTGTGAATGATGCTGTTGATACAGCACTGGACTCGGA
GGATATTGAAGAGGAGATAGAAGAAGAAGTTGATAAGGTCTTGACTGCAA
TTGCTGGTGAGACAGCAGCACAACTGCCTGAAGCAGTTAGAAAGGAAAGG
GTGAAGCAATCTGCTCAGACATCTAGAGCAGCACAGGAGGAGGATGCTGT
TGCTGAGGGTATCGATGATGAGAAAGAACTAGAAGAAAATAGAGCCCGGC
TTTGCCAAGNTAGGTCATAACTTAA
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