FC868696
Overview
Libraries
Analyses
This EST is derived from or has results from the following analyses
Alignments
Homology
BLAST of FC868696 vs. ExPASy Swiss-Prot
Match: VP241_ARATH (Vacuolar protein sorting-associated protein 24 homolog 1 OS=Arabidopsis thaliana GN=VPS24-1 PE=2 SV=1) HSP 1 Score: 353.984 bits (907), Expect = 4.761e-97 Identity = 181/229 (79.04%), Postives = 207/229 (90.39%), Query Frame = 1 Query: 31 MEKVMNMIKPKPNPQQLLRDWQRKLRQECRNIERQIRDIQREEKNVQKAIKDAAKRNDLSSAKSLAQELVRSRKTVNRLYENKAQMNSISMHLGESVAIARTVGHLNKSAEVMKLVNNLMKAPEVAATMQEFSKEMTKAGVIEEFVNDAVDTALDSXXXXXXXXXXVDKVLTAIAGETAAQLPEAVRKERVKQSAQTSRAAQEEDAVAEGIDDEKELEENRARLCQXRS 717 ME+VMN+IKPKP+P+QLLRDWQRKLRQECRNIERQIRDIQ+EE+NVQKAIK+AAKRND+ SAK+LA+E+V SR+TVNRLYENKAQMNSISMHLGESVAIARTVGHL+KSAEVMKLVNNLMKAP++AATMQEFSKEMTKAGVIEEFVN+A+D ALDS VDKVLTAIAGETAA+LP AVRKER+K AQ + ++EE+AVAEG+DDE+ELEE RARL + RS Sbjct: 1 MERVMNIIKPKPDPKQLLRDWQRKLRQECRNIERQIRDIQKEERNVQKAIKEAAKRNDMVSAKALAKEIVSSRRTVNRLYENKAQMNSISMHLGESVAIARTVGHLSKSAEVMKLVNNLMKAPQMAATMQEFSKEMTKAGVIEEFVNEAIDNALDSEDMEEEIDEEVDKVLTAIAGETAAELPVAVRKERIKVPAQKASTSREEEAVAEGVDDEEELEEIRARLAKVRS 229
BLAST of FC868696 vs. ExPASy Swiss-Prot
Match: VP242_ARATH (Putative vacuolar protein sorting-associated protein 24 homolog 2 OS=Arabidopsis thaliana GN=VPS24-2 PE=2 SV=1) HSP 1 Score: 248.44 bits (633), Expect = 2.817e-65 Identity = 131/198 (66.16%), Postives = 156/198 (78.79%), Query Frame = 1 Query: 124 IERQIRDIQREEKNVQKAIKDAAKRNDLSSAKSLAQELVRSRKTVNRLYENKAQMNSISMHLGESVAIARTVGHLNKSAEVMKLVNNLMKAPEVAATMQEFSKEMTKAGVIEEFVNDAVDTALDSXXXXXXXXXXVDKVLTAIAGETAAQLPEAVRKERVKQSAQTSRAAQEEDAVAEGIDDEKELEENRARLCQXRS 717 I+ + DI+REE+NV KAIKD+ KRNDL +AK+LA+E+V SR+TV RLYENKAQ+NSISMHLGES+A A TVG+L+KS EVMKLVN+LMKAPE+A TMQ FSKEMTK GVIEEFV+DAVD ALDS VDKVLTAIAGETAA+LPEAVRK+++ AQ + EDA+ EG+D E+ELE R RL RS Sbjct: 3 IKSLLSDIEREERNVHKAIKDSVKRNDLVTAKALAREIVSSRRTVKRLYENKAQVNSISMHLGESIATAVTVGNLSKSGEVMKLVNSLMKAPEIAVTMQAFSKEMTKTGVIEEFVSDAVDNALDSEDIEEEIEEEVDKVLTAIAGETAAELPEAVRKQKMNVPAQKAETLHGEDAIVEGVDAEEELEAIRYRLANVRS 200
BLAST of FC868696 vs. ExPASy Swiss-Prot
Match: CHMP3_MOUSE (Charged multivesicular body protein 3 OS=Mus musculus GN=Vps24 PE=1 SV=3) HSP 1 Score: 164.466 bits (415), Expect = 5.351e-40 Identity = 87/216 (40.28%), Postives = 131/216 (60.65%), Query Frame = 1 Query: 70 PQQLLRDWQRKLRQECRNIERQIRDIQREEKNVQKAIKDAAKRNDLSSAKSLAQELVRSRKTVNRLYENKAQMNSISMHLGESVAIARTVGHLNKSAEVMKLVNNLMKAPEVAATMQEFSKEMTKAGVIEEFVNDAVDTALDSXXXXXXXXXXVDKVLTAIAGETAAQLPEAVRKERVKQSAQTSRAAQEEDAVAEGIDDEKELEENRARLCQXRS 717 P++L+ +W K+R+E R ++RQIRDIQREE+ V++++KDAAK+ LA+E++RSRK V++LY +KA MNS+ M + +A+ R G L KS EVMK + +L+K PE+ ATM+E SKEM KAG+IEE + D ++ D +D++L I + P V + + AA EE E +DE++LE ++RL RS Sbjct: 12 PKELVNEWSLKIRKEMRVVDRQIRDIQREEEKVKRSVKDAAKKGQKEVCVVLAKEMIRSRKAVSKLYASKAHMNSVLMGMKNQLAVLRVAGSLQKSTEVMKAMQSLVKIPEIQATMRELSKEMMKAGIIEEMLEDTFESMDDQEEMEEAAEMEIDRILFEITAGALGKAPSKVTDALPEPEPAGAMAASEE---GEEEEDEEDLEAMQSRLATLRS 224
BLAST of FC868696 vs. ExPASy Swiss-Prot
Match: CHMP3_RAT (Charged multivesicular body protein 3 OS=Rattus norvegicus GN=Vps24 PE=1 SV=3) HSP 1 Score: 164.081 bits (414), Expect = 6.988e-40 Identity = 87/216 (40.28%), Postives = 130/216 (60.19%), Query Frame = 1 Query: 70 PQQLLRDWQRKLRQECRNIERQIRDIQREEKNVQKAIKDAAKRNDLSSAKSLAQELVRSRKTVNRLYENKAQMNSISMHLGESVAIARTVGHLNKSAEVMKLVNNLMKAPEVAATMQEFSKEMTKAGVIEEFVNDAVDTALDSXXXXXXXXXXVDKVLTAIAGETAAQLPEAVRKERVKQSAQTSRAAQEEDAVAEGIDDEKELEENRARLCQXRS 717 P++L+ +W K+R+E R ++RQIRDIQREE+ V++++KDAAK+ LA+E++RSRK V++LY +KA MNS+ M + +A+ R G L KS EVMK + +L+K PE+ ATM+E SKEM KAG+IEE + D ++ D +D++L I + P V + + AA E D DDE++LE ++RL RS Sbjct: 12 PKELVNEWSLKIRKEMRVVDRQIRDIQREEEKVKRSVKDAAKKGQKEVCVVLAKEMIRSRKAVSKLYASKAHMNSVLMGMKNQLAVLRVAGSLQKSTEVMKAMQSLVKIPEIQATMRELSKEMMKAGIIEEMLEDTFESMDDQEEMEEAAEMEIDRILFEITAGALGKAPSKVTDALPEPEPAGAMAASEGDEE----DDEEDLEAMQSRLATLRS 223
BLAST of FC868696 vs. ExPASy Swiss-Prot
Match: CHMP3_PONAB (Charged multivesicular body protein 3 OS=Pongo abelii GN=VPS24 PE=2 SV=3) HSP 1 Score: 160.614 bits (405), Expect = 7.726e-39 Identity = 84/216 (38.89%), Postives = 130/216 (60.19%), Query Frame = 1 Query: 70 PQQLLRDWQRKLRQECRNIERQIRDIQREEKNVQKAIKDAAKRNDLSSAKSLAQELVRSRKTVNRLYENKAQMNSISMHLGESVAIARTVGHLNKSAEVMKLVNNLMKAPEVAATMQEFSKEMTKAGVIEEFVNDAVDTALDSXXXXXXXXXXVDKVLTAIAGETAAQLPEAVRKERVKQSAQTSRAAQEEDAVAEGIDDEKELEENRARLCQXRS 717 P++L+ +W K+R+E R ++RQIRDIQREE+ V++++KDAAK+ LA+E++RSRK V++LY +KA MNS+ M + +A+ R G L KS EVMK + +L+K PE+ ATM+E SKEM KAG+IEE + D ++ D +D++L I + P V + + AA E++ ++E+ LE ++RL RS Sbjct: 12 PKELVNEWSLKIRKEMRVVDRQIRDIQREEEKVKRSVKDAAKKGQKDVCVVLAKEMIRSRKAVSKLYASKAHMNSVLMGMKNQLAVLRVAGSLQKSTEVMKAMQSLVKIPEIQATMRELSKEMMKAGIIEEMLEDTFESMDDQEEMEEEAEMEIDRILFEITAGALGKAPSKVTDALPEPEPSGAMAASEDEE-----EEEEALEAMQSRLATLRS 222
BLAST of FC868696 vs. ExPASy Swiss-Prot
Match: CHMP3_MACFA (Charged multivesicular body protein 3 OS=Macaca fascicularis GN=VPS24 PE=2 SV=3) HSP 1 Score: 160.614 bits (405), Expect = 7.726e-39 Identity = 84/216 (38.89%), Postives = 130/216 (60.19%), Query Frame = 1 Query: 70 PQQLLRDWQRKLRQECRNIERQIRDIQREEKNVQKAIKDAAKRNDLSSAKSLAQELVRSRKTVNRLYENKAQMNSISMHLGESVAIARTVGHLNKSAEVMKLVNNLMKAPEVAATMQEFSKEMTKAGVIEEFVNDAVDTALDSXXXXXXXXXXVDKVLTAIAGETAAQLPEAVRKERVKQSAQTSRAAQEEDAVAEGIDDEKELEENRARLCQXRS 717 P++L+ +W K+R+E R ++RQIRDIQREE+ V++++KDAAK+ LA+E++RSRK V++LY +KA MNS+ M + +A+ R G L KS EVMK + +L+K PE+ ATM+E SKEM KAG+IEE + D ++ D +D++L I + P V + + AA +E+ ++E+ LE ++RL RS Sbjct: 12 PKELVNEWSLKIRKEMRVVDRQIRDIQREEEKVKRSVKDAAKKGQKDVCVVLAKEMIRSRKAVSKLYASKAHMNSVLMGMKNQLAVLRVAGSLQKSTEVMKAMQSLVKIPEIRATMRELSKEMMKAGIIEEMLEDTFESMDDQEEMEEAAEMEIDRILFEITAGALGKAPSKVTDALPEPEPSGAMAASDEEE-----EEEEALEAMQSRLATLRS 222
BLAST of FC868696 vs. ExPASy Swiss-Prot
Match: CHMP3_HUMAN (Charged multivesicular body protein 3 OS=Homo sapiens GN=VPS24 PE=1 SV=3) HSP 1 Score: 159.844 bits (403), Expect = 1.318e-38 Identity = 84/216 (38.89%), Postives = 130/216 (60.19%), Query Frame = 1 Query: 70 PQQLLRDWQRKLRQECRNIERQIRDIQREEKNVQKAIKDAAKRNDLSSAKSLAQELVRSRKTVNRLYENKAQMNSISMHLGESVAIARTVGHLNKSAEVMKLVNNLMKAPEVAATMQEFSKEMTKAGVIEEFVNDAVDTALDSXXXXXXXXXXVDKVLTAIAGETAAQLPEAVRKERVKQSAQTSRAAQEEDAVAEGIDDEKELEENRARLCQXRS 717 P++L+ +W K+R+E R ++RQIRDIQREE+ V++++KDAAK+ LA+E++RSRK V++LY +KA MNS+ M + +A+ R G L KS EVMK + +L+K PE+ ATM+E SKEM KAG+IEE + D ++ D +D++L I + P V + + AA E++ ++E+ LE ++RL RS Sbjct: 12 PKELVNEWSLKIRKEMRVVDRQIRDIQREEEKVKRSVKDAAKKGQKDVCIVLAKEMIRSRKAVSKLYASKAHMNSVLMGMKNQLAVLRVAGSLQKSTEVMKAMQSLVKIPEIQATMRELSKEMMKAGIIEEMLEDTFESMDDQEEMEEEAEMEIDRILFEITAGALGKAPSKVTDALPEPEPPGAMAASEDEE-----EEEEALEAMQSRLATLRS 222
BLAST of FC868696 vs. ExPASy Swiss-Prot
Match: CHMP3_BOVIN (Charged multivesicular body protein 3 OS=Bos taurus GN=VPS24 PE=2 SV=4) HSP 1 Score: 159.844 bits (403), Expect = 1.318e-38 Identity = 84/216 (38.89%), Postives = 130/216 (60.19%), Query Frame = 1 Query: 70 PQQLLRDWQRKLRQECRNIERQIRDIQREEKNVQKAIKDAAKRNDLSSAKSLAQELVRSRKTVNRLYENKAQMNSISMHLGESVAIARTVGHLNKSAEVMKLVNNLMKAPEVAATMQEFSKEMTKAGVIEEFVNDAVDTALDSXXXXXXXXXXVDKVLTAIAGETAAQLPEAVRKERVKQSAQTSRAAQEEDAVAEGIDDEKELEENRARLCQXRS 717 P++L+ +W K+R+E R ++RQIRDIQREE+ V++++KDAAK+ LA+E++RSRK V++LY +KA MNS+ M + +A+ R G L KS EVMK + +L+K PE+ ATM+E SKEM KAG+IEE + D ++ D +D++L I + P V + + AA E++ ++E+ LE ++RL RS Sbjct: 12 PKELVNEWSLKIRKEMRVVDRQIRDIQREEEKVKRSVKDAAKKGQKDVCVVLAKEMIRSRKAVSKLYASKAHMNSVLMGMKNQLAVLRVAGSLQKSTEVMKAMQSLVKIPEIQATMRELSKEMMKAGIIEEMLEDTFESMDDQEEMEEAAEMEIDRILFEITAGALGKAPSKVTDALPEPEPLGAMAASEDEE-----EEEEALEAMQSRLATLRS 222
BLAST of FC868696 vs. ExPASy Swiss-Prot
Match: CHMP3_DANRE (Charged multivesicular body protein 3 OS=Danio rerio GN=vps24 PE=2 SV=3) HSP 1 Score: 159.458 bits (402), Expect = 1.721e-38 Identity = 86/216 (39.81%), Postives = 134/216 (62.04%), Query Frame = 1 Query: 70 PQQLLRDWQRKLRQECRNIERQIRDIQREEKNVQKAIKDAAKRNDLSSAKSLAQELVRSRKTVNRLYENKAQMNSISMHLGESVAIARTVGHLNKSAEVMKLVNNLMKAPEVAATMQEFSKEMTKAGVIEEFVNDAVDTALDSXXXXXXXXXXVDKVLTAIAGETAAQLPEAVRKERVKQSAQTSRAAQEEDAVAEGIDDEKELEENRARLCQXRS 717 P+ L+ +W K+R+E R I+RQIRDIQREE+ V+++IKDAAK+ LA+E+++S++ +N+LY +KAQMNS+ + + +++ R G L KS EVMK + +L+K PE+ ATM++ SKEM KAG+IEE + D ++ D VDK+L I + P V + A + AA EE++ ++E+E+EE ++RL RS Sbjct: 12 PKDLINEWSLKIRKEMRVIDRQIRDIQREEEKVKRSIKDAAKKGQKDVCIILAKEMIQSKRAINKLYASKAQMNSVLLSMKNQLSVLRVAGALQKSTEVMKAMQSLVKIPEIQATMRDLSKEMMKAGIIEEMLEDTLEGMDDEEEMEEAAEAEVDKILFEITAGALGKAPSKV-TDLPDPVAIGATAAPEEES-----EEEEEIEEMQSRLAALRS 221
BLAST of FC868696 vs. ExPASy Swiss-Prot
Match: CHMP3_XENLA (Charged multivesicular body protein 3 OS=Xenopus laevis GN=vps24 PE=2 SV=3) HSP 1 Score: 157.147 bits (396), Expect = 8.542e-38 Identity = 83/216 (38.43%), Postives = 129/216 (59.72%), Query Frame = 1 Query: 70 PQQLLRDWQRKLRQECRNIERQIRDIQREEKNVQKAIKDAAKRNDLSSAKSLAQELVRSRKTVNRLYENKAQMNSISMHLGESVAIARTVGHLNKSAEVMKLVNNLMKAPEVAATMQEFSKEMTKAGVIEEFVNDAVDTALDSXXXXXXXXXXVDKVLTAIAGETAAQLPEAVRKERVKQSAQTSRAAQEEDAVAEGIDDEKELEENRARLCQXRS 717 P+ L+ +W K+R+E R I+RQIRDIQRE++ V+++IK++AK+ + + LA+E+V+S+K VN+LY +KA MNS+ M + +A+ R G L KS EVMK + NL+K PE+ ATM+E SKEM KAG+IEE + D + D +D++L + + P V + + AA +E ++E++LE +RL RS Sbjct: 12 PKDLVNEWSLKIRKEMRVIDRQIRDIQREQEKVKRSIKESAKKGNREACVILAKEVVQSKKAVNKLYASKAHMNSVLMSMKNQLAVLRVSGSLQKSTEVMKAMQNLVKLPEIQATMRELSKEMMKAGIIEEMLEDTFEGMEDQDEMEEQAEMEIDRILFEVTAGALGKAPSKVTDALPEPEITGAMAASDE-------EEEEDLEAMHSRLAALRS 220 The following BLAST results are available for this feature:
BLAST of FC868696 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt) Total hits: 34
Pagesback to topProperties
Sequences
The
following sequences are available for this feature:
EST sequence >FC868696 ID=FC868696; Name=FC868696; organism=Citrus clementina; type=EST; length=725bpback to top |