FC868703

Overview
NameFC868703
Unique NameFC868703
TypeEST
OrganismCitrus clementina (Clementine)
Sequence length729
Libraries
Library NameType
AbioticL1cdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Alignments
Feature NameTypeLocationAnalysis
Ccv1_Contig6366 contig Ccv1_Contig6366:127..855. BLAST: Citrus Unigene V1 Contigs to Prunus persica proteins V1
Homology
BLAST of FC868703 vs. ExPASy Swiss-Prot
Match: AL2B4_ARATH (Aldehyde dehydrogenase family 2 member B4, mitochondrial OS=Arabidopsis thaliana GN=ALDH2B4 PE=1 SV=1)

HSP 1 Score: 299.671 bits (766), Expect = 1.074e-80
Identity = 145/225 (64.44%), Postives = 173/225 (76.89%), Query Frame = 3
Query:   57 ISTLLSRSFPSAXXXXXXXXXXXXXXARGISRFSTAAVVEEPII-PPVQISYTKNLINGQFVDAASGKTFPVYDPRTAEVIANVAEGDAEDIDRAVATARKAFDEGPWPKMTPYERSRIMLRAADLIEKNMEELAALETWNNGKPYVQSLKSEVPMVVRLLHYYAGWADKIHGLTVPGDGNYHIQTLHEPIGVAGQIVPWNFPLLLFTWKVAPALTLWHTIXLKS 728
            +S+LLSRSF ++                 + RF T++   E II P VQ+S+T+ LING FVD+ASGKTFP  DPRT EVIA+VAEGDAEDI+RAV  AR AFDEGPWPKM+ YERSR++LR ADL+EK+ EELA+LETW+NGKPY QSL +E+PM  RL  YYAGWADKIHGLT+P DGNY + TLHEPIGVAGQI+PWNFPLL+F WKV PAL   +TI LK+
Sbjct:    6 VSSLLSRSFSASSPLLFRSQGRNCYNGGILRRFGTSSAAAEEIINPSVQVSHTQLLINGNFVDSASGKTFPTLDPRTGEVIAHVAEGDAEDINRAVKAARTAFDEGPWPKMSAYERSRVLLRFADLVEKHSEELASLETWDNGKPYQQSLTAEIPMFARLFRYYAGWADKIHGLTIPADGNYQVHTLHEPIGVAGQIIPWNFPLLMFAWKVGPALACGNTIVLKT 230          
BLAST of FC868703 vs. ExPASy Swiss-Prot
Match: AL2B7_ARATH (Aldehyde dehydrogenase family 2 member B7, mitochondrial OS=Arabidopsis thaliana GN=ALDH2B7 PE=2 SV=2)

HSP 1 Score: 293.893 bits (751), Expect = 5.894e-79
Identity = 142/225 (63.11%), Postives = 174/225 (77.33%), Query Frame = 3
Query:   57 ISTLLSRSFPSAXXXXXXXXXXXXXXARGISRFST-AAVVEEPIIPPVQISYTKNLINGQFVDAASGKTFPVYDPRTAEVIANVAEGDAEDIDRAVATARKAFDEGPWPKMTPYERSRIMLRAADLIEKNMEELAALETWNNGKPYVQSLKSEVPMVVRLLHYYAGWADKIHGLTVPGDGNYHIQTLHEPIGVAGQIVPWNFPLLLFTWKVAPALTLWHTIXLKS 728
            +S+LLSRSF S+               RG  R+S  AA VE  I PPV++ +T+ LI G+FVDA SGKTFP  DPR  EVIA V+EGDAED++RAVA ARKAFDEGPWPKMT YERS+I+ R ADLIEK+ +E+AALETW+NGKPY QS + EVPM+ R+  YYAGWADKIHG+T+PGDG +H+QTLHEPIGVAGQI+PWNFPLL+ +WK+ PAL   +T+ LK+
Sbjct:    6 VSSLLSRSFMSSSRSIFSLRGMN----RGAQRYSNLAAAVENTITPPVKVEHTQLLIGGRFVDAVSGKTFPTLDPRNGEVIAQVSEGDAEDVNRAVAAARKAFDEGPWPKMTAYERSKILFRFADLIEKHNDEIAALETWDNGKPYEQSAQIEVPMLARVFRYYAGWADKIHGMTMPGDGPHHVQTLHEPIGVAGQIIPWNFPLLMLSWKLGPALACGNTVVLKT 226          
BLAST of FC868703 vs. ExPASy Swiss-Prot
Match: AL1B1_PONAB (Aldehyde dehydrogenase X, mitochondrial OS=Pongo abelii GN=ALDH1B1 PE=2 SV=1)

HSP 1 Score: 194.512 bits (493), Expect = 4.866e-49
Identity = 96/194 (49.48%), Postives = 133/194 (68.56%), Query Frame = 3
Query:  147 SRFSTAAVVEEPIIPPVQISYTKNLINGQFVDAASGKTFPVYDPRTAEVIANVAEGDAEDIDRAVATARKAFDEG-PWPKMTPYERSRIMLRAADLIEKNMEELAALETWNNGKPYVQSLKSEVPMVVRLLHYYAGWADKIHGLTVPGDGNYHIQTLHEPIGVAGQIVPWNFPLLLFTWKVAPALTLWHTIXLK 725
            +R+S+AA +  PI+ P  I Y +  IN ++ DA S KTFP  +P T EVI +VAEGD  D+DRAV  AR+AF  G PW +M   ER R++   ADL+E++   LA+LET +NGKP+ +S   ++  V+++  Y+AGWADK HG T+P DG +   T HEPIGV GQI+PWNFPL++  WK+APAL   +T+ +K
Sbjct:   17 ARYSSAAALPSPILNP-DIPYNQLFINNEWQDAVSKKTFPTVNPTTGEVIGHVAEGDRADVDRAVKAAREAFRLGSPWRRMDASERGRLLNCLADLVERDRVYLASLETLDNGKPFQESYALDLDEVIKVYRYFAGWADKWHGKTIPMDGQHFCFTRHEPIGVCGQIIPWNFPLVMQGWKLAPALATGNTVVMK 209          
BLAST of FC868703 vs. ExPASy Swiss-Prot
Match: AL1B1_HUMAN (Aldehyde dehydrogenase X, mitochondrial OS=Homo sapiens GN=ALDH1B1 PE=1 SV=2)

HSP 1 Score: 194.512 bits (493), Expect = 4.866e-49
Identity = 95/194 (48.97%), Postives = 133/194 (68.56%), Query Frame = 3
Query:  147 SRFSTAAVVEEPIIPPVQISYTKNLINGQFVDAASGKTFPVYDPRTAEVIANVAEGDAEDIDRAVATARKAFDEG-PWPKMTPYERSRIMLRAADLIEKNMEELAALETWNNGKPYVQSLKSEVPMVVRLLHYYAGWADKIHGLTVPGDGNYHIQTLHEPIGVAGQIVPWNFPLLLFTWKVAPALTLWHTIXLK 725
            +R+S+AA +  PI+ P  I Y +  IN ++ DA S KTFP  +P T EVI +VAEGD  D+DRAV  AR+AF  G PW +M   ER R++   ADL+E++   LA+LET +NGKP+ +S   ++  V+++  Y+AGWADK HG T+P DG +   T HEP+GV GQI+PWNFPL++  WK+APAL   +T+ +K
Sbjct:   17 ARYSSAAALPSPILNP-DIPYNQLFINNEWQDAVSKKTFPTVNPTTGEVIGHVAEGDRADVDRAVKAAREAFRLGSPWRRMDASERGRLLNLLADLVERDRVYLASLETLDNGKPFQESYALDLDEVIKVYRYFAGWADKWHGKTIPMDGQHFCFTRHEPVGVCGQIIPWNFPLVMQGWKLAPALATGNTVVMK 209          
BLAST of FC868703 vs. ExPASy Swiss-Prot
Match: ALDH2_BOVIN (Aldehyde dehydrogenase, mitochondrial OS=Bos taurus GN=ALDH2 PE=1 SV=2)

HSP 1 Score: 194.126 bits (492), Expect = 6.355e-49
Identity = 93/177 (52.54%), Postives = 122/177 (68.93%), Query Frame = 3
Query:  198 QISYTKNLINGQFVDAASGKTFPVYDPRTAEVIANVAEGDAEDIDRAVATARKAFDEG-PWPKMTPYERSRIMLRAADLIEKNMEELAALETWNNGKPYVQSLKSEVPMVVRLLHYYAGWADKIHGLTVPGDGNYHIQTLHEPIGVAGQIVPWNFPLLLFTWKVAPALTLWHTIXLK 725
            ++ Y +  IN ++ DA S KTFP  +P T +VI +VAEGD  D+DRAV  AR AF  G PW +M   ER R++ R ADLIE++   LAALET +NGKPY+ S   ++ MV++ L YYAGWADK HG T+P DG+Y   T HEP+GV GQI+PWNFPLL+  WK+ PAL   + + +K
Sbjct:   36 EVLYNQIFINNEWHDAVSKKTFPTVNPSTGDVICHVAEGDKADVDRAVKAARAAFQLGSPWRRMDASERGRLLNRLADLIERDRTYLAALETLDNGKPYIISYLVDLDMVLKCLRYYAGWADKYHGKTIPIDGDYFSYTRHEPVGVCGQIIPWNFPLLMQAWKLGPALATGNVVVMK 212          
BLAST of FC868703 vs. ExPASy Swiss-Prot
Match: ALDH2_PIG (Aldehyde dehydrogenase, mitochondrial OS=Sus scrofa GN=ALDH2 PE=2 SV=1)

HSP 1 Score: 193.741 bits (491), Expect = 8.301e-49
Identity = 94/177 (53.11%), Postives = 123/177 (69.49%), Query Frame = 3
Query:  198 QISYTKNLINGQFVDAASGKTFPVYDPRTAEVIANVAEGDAEDIDRAVATARKAFDEG-PWPKMTPYERSRIMLRAADLIEKNMEELAALETWNNGKPYVQSLKSEVPMVVRLLHYYAGWADKIHGLTVPGDGNYHIQTLHEPIGVAGQIVPWNFPLLLFTWKVAPALTLWHTIXLK 725
            +I Y +  IN ++ DA S KTFP  +P T +VI +VAEGD ED+DRAV  AR AF  G PW ++   +R R++ R ADLIE++   LAALET +NGKPYV S   ++ MV++ L YYAGWADK HG T+P DG+Y   T HEP+GV GQI+PWNFPLL+  WK+ PAL   + + +K
Sbjct:   37 EIFYNQIFINNEWHDAISKKTFPTVNPSTGDVICHVAEGDKEDVDRAVEAARAAFQLGSPWRRLDASDRGRLLNRLADLIERDRTYLAALETLDNGKPYVISYLVDLDMVLKCLRYYAGWADKYHGKTLPIDGDYFSYTRHEPVGVCGQIIPWNFPLLMQAWKLGPALATGNVVVMK 213          
BLAST of FC868703 vs. ExPASy Swiss-Prot
Match: AL1B1_MOUSE (Aldehyde dehydrogenase X, mitochondrial OS=Mus musculus GN=Aldh1b1 PE=2 SV=1)

HSP 1 Score: 193.741 bits (491), Expect = 8.301e-49
Identity = 96/192 (50.00%), Postives = 131/192 (68.23%), Query Frame = 3
Query:  153 FSTAAVVEEPIIPPVQISYTKNLINGQFVDAASGKTFPVYDPRTAEVIANVAEGDAEDIDRAVATARKAFDEG-PWPKMTPYERSRIMLRAADLIEKNMEELAALETWNNGKPYVQSLKSEVPMVVRLLHYYAGWADKIHGLTVPGDGNYHIQTLHEPIGVAGQIVPWNFPLLLFTWKVAPALTLWHTIXLK 725
            +STAA +  PI P  +I Y K  IN ++ DA S KTFP  +P T EVI +VAEGD  D+D AV  AR+AF  G PW +M   ER R++ R ADL+E++   LA+LET +NGKP+ +S   ++  V+++  Y+AGWADK HG T+P DG +   T HEP+GV GQI+PWNFPL++  WK+APAL   +T+ +K
Sbjct:   21 YSTAAALPNPI-PNPEICYNKLFINNEWHDAVSKKTFPTVNPTTGEVIGHVAEGDRADVDLAVKAAREAFRLGSPWRRMDASERGRLLNRLADLVERDRVYLASLETLDNGKPFQESYVLDLDEVIKVYRYFAGWADKWHGKTIPMDGEHFCFTRHEPVGVCGQIIPWNFPLVMQGWKLAPALATGNTVVMK 211          
BLAST of FC868703 vs. ExPASy Swiss-Prot
Match: AL1A2_RAT (Retinal dehydrogenase 2 OS=Rattus norvegicus GN=Aldh1a2 PE=1 SV=2)

HSP 1 Score: 193.356 bits (490), Expect = 1.084e-48
Identity = 90/180 (50.00%), Postives = 125/180 (69.44%), Query Frame = 3
Query:  189 PPVQISYTKNLINGQFVDAASGKTFPVYDPRTAEVIANVAEGDAEDIDRAVATARKAFDEGP-WPKMTPYERSRIMLRAADLIEKNMEELAALETWNNGKPYVQSLKSEVPMVVRLLHYYAGWADKIHGLTVPGDGNYHIQTLHEPIGVAGQIVPWNFPLLLFTWKVAPALTLWHTIXLK 725
            P ++I YTK  IN ++ ++ SG+ FPV +P T E +  V E D  DID+AV  AR AF  G  W +M   ER R++ + ADL+E++   LA +E+ N GKP++Q+   ++  V++ L YYAGWADKIHG+T+P DG+Y   T HEPIGV GQI+PWNFPLL+FTWK+APAL   +T+ +K
Sbjct:   31 PNLEIKYTKIFINNEWQNSESGRVFPVCNPATGEQVCEVQEADKVDIDKAVQAARLAFSLGSVWRRMDASERGRLLDKLADLVERDRATLATMESLNGGKPFLQAFYIDLQGVIKTLRYYAGWADKIHGMTIPVDGDYFTFTRHEPIGVCGQIIPWNFPLLMFTWKIAPALCCGNTVVIK 210          
BLAST of FC868703 vs. ExPASy Swiss-Prot
Match: AL1A2_MOUSE (Retinal dehydrogenase 2 OS=Mus musculus GN=Aldh1a2 PE=1 SV=2)

HSP 1 Score: 193.356 bits (490), Expect = 1.084e-48
Identity = 90/180 (50.00%), Postives = 125/180 (69.44%), Query Frame = 3
Query:  189 PPVQISYTKNLINGQFVDAASGKTFPVYDPRTAEVIANVAEGDAEDIDRAVATARKAFDEGP-WPKMTPYERSRIMLRAADLIEKNMEELAALETWNNGKPYVQSLKSEVPMVVRLLHYYAGWADKIHGLTVPGDGNYHIQTLHEPIGVAGQIVPWNFPLLLFTWKVAPALTLWHTIXLK 725
            P ++I YTK  IN ++ ++ SG+ FPV +P T E +  V E D  DID+AV  AR AF  G  W +M   ER R++ + ADL+E++   LA +E+ N GKP++Q+   ++  V++ L YYAGWADKIHG+T+P DG+Y   T HEPIGV GQI+PWNFPLL+FTWK+APAL   +T+ +K
Sbjct:   31 PNLEIKYTKIFINNEWQNSESGRVFPVCNPATGEQVCEVQEADKVDIDKAVQAARLAFSLGSVWRRMDASERGRLLDKLADLVERDRATLATMESLNGGKPFLQAFYIDLQGVIKTLRYYAGWADKIHGMTIPVDGDYFTFTRHEPIGVCGQIIPWNFPLLMFTWKIAPALCCGNTVVIK 210          
BLAST of FC868703 vs. ExPASy Swiss-Prot
Match: AL1A2_HUMAN (Retinal dehydrogenase 2 OS=Homo sapiens GN=ALDH1A2 PE=1 SV=3)

HSP 1 Score: 193.356 bits (490), Expect = 1.084e-48
Identity = 89/180 (49.44%), Postives = 124/180 (68.89%), Query Frame = 3
Query:  189 PPVQISYTKNLINGQFVDAASGKTFPVYDPRTAEVIANVAEGDAEDIDRAVATARKAFDEGP-WPKMTPYERSRIMLRAADLIEKNMEELAALETWNNGKPYVQSLKSEVPMVVRLLHYYAGWADKIHGLTVPGDGNYHIQTLHEPIGVAGQIVPWNFPLLLFTWKVAPALTLWHTIXLK 725
            P ++I YTK  IN ++ ++ SG+ FPVY+P T E +  V E D  DID+AV  AR AF  G  W +M   ER R++ + ADL+E++   LA +E+ N GKP++Q+   ++  V++   YYAGWADKIHG+T+P DG+Y   T HEPIGV GQI+PWNFPLL+F WK+APAL   +T+ +K
Sbjct:   31 PNLEIKYTKIFINNEWQNSESGRVFPVYNPATGEQVCEVQEADKADIDKAVQAARLAFSLGSVWRRMDASERGRLLDKLADLVERDRAVLATMESLNGGKPFLQAFYVDLQGVIKTFRYYAGWADKIHGMTIPVDGDYFTFTRHEPIGVCGQIIPWNFPLLMFAWKIAPALCCGNTVVIK 210          
The following BLAST results are available for this feature:
BLAST of FC868703 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 369
Match NameE-valueIdentityDescription
AL2B4_ARATH1.074e-8064.44Aldehyde dehydrogenase family 2 member B4, mitocho... [more]
AL2B7_ARATH5.894e-7963.11Aldehyde dehydrogenase family 2 member B7, mitocho... [more]
AL1B1_PONAB4.866e-4949.48Aldehyde dehydrogenase X, mitochondrial OS=Pongo a... [more]
AL1B1_HUMAN4.866e-4948.97Aldehyde dehydrogenase X, mitochondrial OS=Homo sa... [more]
ALDH2_BOVIN6.355e-4952.54Aldehyde dehydrogenase, mitochondrial OS=Bos tauru... [more]
ALDH2_PIG8.301e-4953.11Aldehyde dehydrogenase, mitochondrial OS=Sus scrof... [more]
AL1B1_MOUSE8.301e-4950.00Aldehyde dehydrogenase X, mitochondrial OS=Mus mus... [more]
AL1A2_RAT1.084e-4850.00Retinal dehydrogenase 2 OS=Rattus norvegicus GN=Al... [more]
AL1A2_MOUSE1.084e-4850.00Retinal dehydrogenase 2 OS=Mus musculus GN=Aldh1a2... [more]
AL1A2_HUMAN1.084e-4849.44Retinal dehydrogenase 2 OS=Homo sapiens GN=ALDH1A2... [more]

Pages

back to top
Properties
Property NameValue
Genbank descriptionC31003F12EF AbioticL1 Citrus clementina cDNA clone C31003F12, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>FC868703 ID=FC868703; Name=FC868703; organism=Citrus clementina; type=EST; length=729bp
GGGAGAAGAGTTGAATAGGTCGCCTCTTCGCTTTGGCTATGGCAGCTGCT
CGCAGAATCTCCACCTTGCTGTCTCGTTCTTTCCCTTCTGCTTCTCCTTC
TCTGCTTCGCTCTCTTGGTAGGGAGTCTAGCAGGGCAAGAGGCATCAGCA
GGTTTAGCACAGCTGCTGTTGTTGAAGAGCCAATCATTCCACCTGTTCAA
ATTAGTTACACTAAGAATTTAATAAATGGCCAATTTGTAGACGCAGCATC
AGGCAAAACATTTCCGGTCTACGACCCTCGTACTGCTGAAGTGATTGCTA
ATGTTGCTGAAGGAGATGCGGAAGATATTGACCGTGCAGTTGCTACTGCT
CGCAAGGCATTTGATGAGGGACCTTGGCCAAAGATGACCCCTTATGAGAG
GTCAAGGATTATGTTGCGGGCTGCTGACTTGATTGAGAAAAACATGGAGG
AGCTGGCAGCTTTGGAGACATGGAACAATGGAAAGCCCTATGTACAATCT
CTCAAATCTGAAGTACCAATGGTGGTTCGCCTGTTGCACTATTATGCTGG
ATGGGCTGATAAAATCCACGGACTAACTGTCCCTGGTGATGGAAATTACC
ATATTCAAACTTTACATGAACCAATTGGCGTTGCTGGCCAGATAGTTCCC
TGGAACTTTCCTCTTCTCTTGTTTACTTGGAAAGTAGCGCCTGCACTAAC
TTTGTGGCATACTATTGNTCTAAAGTCTG
back to top