FC868711

Overview
NameFC868711
Unique NameFC868711
TypeEST
OrganismCitrus clementina (Clementine)
Sequence length725
Libraries
Library NameType
AbioticL1cdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Alignments
Feature NameTypeLocationAnalysis
Ccv1_Contig9382 contig Ccv1_Contig9382:1..725. BLAST: Citrus Unigene V1 Contigs to Prunus persica proteins V1
Homology
BLAST of FC868711 vs. ExPASy Swiss-Prot
Match: AB7G_ARATH (ABC transporter G family member 7 OS=Arabidopsis thaliana GN=ABCG7 PE=1 SV=1)

HSP 1 Score: 294.278 bits (752), Expect = 4.477e-79
Identity = 157/213 (73.71%), Postives = 173/213 (81.22%), Query Frame = 2
Query:   86 MVNFGGNKVGQVVAGIGGNGVGQVLAAVAVSLLFRLFTGPGPALVTDDDSAYGDDDERNDVAEANGDGEAPVDGKVFPVTIRWQNITCSLSDKSSKSVRFLLNNVSGEAKPGRLLAIMGPSGSGKTTLLNVLAGQLMASPRLHLSGLLEVNGKPSSNKAYKFAYVRQEDLFFSQLTVRETLSLAAELQLPEILSVEERDEYVNSLLFKLGLVS 724
            M  FGG  +  VV+GIGGNGVG  LAAVA +LL RLF GPG AL+ +D++    +D+  +  +  GD        + PVTIRW+NITCSLSDKSSKSVRFLL NVSGEAKPGRLLAIMGPSGSGKTTLLNVLAGQL  SPRLHLSGLLEVNGKPSS+KAYK A+VRQEDLFFSQLTVRETLS AAELQLPEI S EERDEYVN+LL KLGLVS
Sbjct:    1 MAPFGGKSLADVVSGIGGNGVGGALAAVAAALLVRLFAGPGIALLPEDEA----EDDYAETEDGGGDS-------IRPVTIRWRNITCSLSDKSSKSVRFLLKNVSGEAKPGRLLAIMGPSGSGKTTLLNVLAGQLSLSPRLHLSGLLEVNGKPSSSKAYKLAFVRQEDLFFSQLTVRETLSFAAELQLPEISSAEERDEYVNNLLLKLGLVS 202          
BLAST of FC868711 vs. ExPASy Swiss-Prot
Match: AB27G_ARATH (ABC transporter G family member 27 OS=Arabidopsis thaliana GN=ABCG27 PE=2 SV=1)

HSP 1 Score: 108.612 bits (270), Expect = 3.484e-23
Identity = 67/189 (35.45%), Postives = 110/189 (58.20%), Query Frame = 2
Query:  161 AAVAVSLLFRLFTGPGPALVTDDDSAYGDDDERNDVAEANGDGEAPVDGKVFPVTIRWQNITCSLSDK--SSKSVRFLLNNVSGEAKPGRLLAIMGPSGSGKTTLLNVLAGQLMASPRLHLSGLLEVNGKP-SSNKAYKFAYVRQEDLFFSQLTVRETLSLAAELQLPEILSVEERDEYVNSLLFKLGL 718
            A++ +S  F  FT P   ++  +  +  +DD   D+  A            FP+ +++ +IT  ++ K  +S S + +LN +SG A PG LLA+MGPSGSGKTTLLN L G+     + ++ G +  N KP S +   +  +V Q+D+ F  LTV+ETL+  A L+LP+ L+ +E+++   S++ +LGL
Sbjct:   92 ASLGLSFSFTGFTVPHEEIIASERCS--NDDILEDIEAATSSVVKFQAEPTFPIYLKFIDITYKVTTKGMTSSSEKSILNGISGSAYPGELLALMGPSGSGKTTLLNALGGRF---NQQNIGGSVSYNDKPYSKHLKTRIGFVTQDDVLFPHLTVKETLTYTALLRLPKTLTEQEKEQRAASVIQELGL 275          
BLAST of FC868711 vs. ExPASy Swiss-Prot
Match: AB15G_ARATH (ABC transporter G family member 15 OS=Arabidopsis thaliana GN=ABCG15 PE=2 SV=2)

HSP 1 Score: 101.293 bits (251), Expect = 5.563e-21
Identity = 56/131 (42.75%), Postives = 85/131 (64.89%), Query Frame = 2
Query:  326 IRWQNITCSLSDKSSKSVRFLLNNVSGEAKPGRLLAIMGPSGSGKTTLLNVLAGQLMASPRLHLSGLLEVNGKPSSNKAYKFAYVRQEDLFFSQLTVRETLSLAAELQLPEILSVEERDEYVNSLLFKLGL 718
            + W+++T  + + S    R LL  ++G A+PGR++AIMGPSGSGK+TLL+ LAG+L  +  + ++G L +NGK +       AYV QED+    LTVRET++ +A L+LP  +S EE  + V   + +LGL
Sbjct:   25 LAWEDLTVVIPNFSDGPTRRLLQRLNGYAEPGRIMAIMGPSGSGKSTLLDSLAGRL--ARNVVMTGNLLLNGKKARLDYGLVAYVTQEDVLLGTLTVRETITYSAHLRLPSDMSKEEVSDIVEGTIMELGL 153          
BLAST of FC868711 vs. ExPASy Swiss-Prot
Match: AB12G_ARATH (ABC transporter G family member 12 OS=Arabidopsis thaliana GN=ABCG12 PE=1 SV=1)

HSP 1 Score: 99.7525 bits (247), Expect = 1.619e-20
Identity = 55/131 (41.98%), Postives = 86/131 (65.65%), Query Frame = 2
Query:  326 IRWQNITCSLSDKSSKSVRFLLNNVSGEAKPGRLLAIMGPSGSGKTTLLNVLAGQLMASPRLHLSGLLEVNGKPSSNKAYKFAYVRQEDLFFSQLTVRETLSLAAELQLPEILSVEERDEYVNSLLFKLGL 718
            + W+++T  + + S    R LL+ ++G A+PGR++AIMGPSGSGK+TLL+ LAG+L  +  + ++G L +NGK +       AYV QED+    LTVRET++ +A L+L   L+ EE ++ V   + +LGL
Sbjct:   24 LAWEDLTVVIPNFSGGPTRRLLDGLNGHAEPGRIMAIMGPSGSGKSTLLDSLAGRL--ARNVIMTGNLLLNGKKARLDYGLVAYVTQEDILMGTLTVRETITYSAHLRLSSDLTKEEVNDIVEGTIIELGL 152          
BLAST of FC868711 vs. ExPASy Swiss-Prot
Match: AB13G_ARATH (ABC transporter G family member 13 OS=Arabidopsis thaliana GN=ABCG13 PE=2 SV=1)

HSP 1 Score: 98.2117 bits (243), Expect = 4.709e-20
Identity = 55/131 (41.98%), Postives = 83/131 (63.36%), Query Frame = 2
Query:  326 IRWQNITCSLSDKSSKSVRFLLNNVSGEAKPGRLLAIMGPSGSGKTTLLNVLAGQLMASPRLHLSGLLEVNGKPSSNKAYKFAYVRQEDLFFSQLTVRETLSLAAELQLPEILSVEERDEYVNSLLFKLGL 718
            + W+++T  + +    + + LLN V+G  +P R+LAIMGPSGSGK+TLL+ LAG+L  +  + +SG + VNGK         AYV QED+    LTVRE++S +A L+LP  L+ EE  + V + +  +GL
Sbjct:   10 VAWEDLTVVIPNFGEGATKRLLNGVNGCGEPNRILAIMGPSGSGKSTLLDALAGRLAGN--VVMSGKVLVNGKKRRLDFGAAAYVTQEDVLLGTLTVRESISYSAHLRLPSKLTREEISDIVEATITDMGL 138          
BLAST of FC868711 vs. ExPASy Swiss-Prot
Match: AB21G_ARATH (ABC transporter G family member 21 OS=Arabidopsis thaliana GN=ABCG21 PE=2 SV=1)

HSP 1 Score: 96.6709 bits (239), Expect = 1.370e-19
Identity = 61/170 (35.88%), Postives = 95/170 (55.88%), Query Frame = 2
Query:  245 DDDERNDVAEANGDGEAPVDGKVFPVTIRWQNITCSLSDKSSKSV-----------RFLLNNVSGEAKPGRLLAIMGPSGSGKTTLLNVLAGQLMASPRLHLSGLLEVNGKP-SSNKAYKFAYVRQEDLFFSQLTVRETLSLAAELQLPEILSVEERDEYVNSLLFKLGL 718
            DDD  +D         + +   + P+ ++++ +T S+  ++ K             R +L  VSG  KPG LLA++GPSGSGKTTL+  LAG+L       LSG +  NG+P +S+   K  +V Q+D+ +  LTV ETL+  A L+LP+ L+ +E+ E V  ++  LGL
Sbjct:   41 DDDNDHDGPSHQSRQSSVLRQSLRPIILKFEELTYSIKSQTGKGSYWFGSQEPKPNRLVLKCVSGIVKPGELLAMLGPSGSGKTTLVTALAGRLQGK----LSGTVSYNGEPFTSSVKRKTGFVTQDDVLYPHLTVMETLTYTALLRLPKELTRKEKLEQVEMVVSDLGL 206          
BLAST of FC868711 vs. ExPASy Swiss-Prot
Match: AB22G_ARATH (ABC transporter G family member 22 OS=Arabidopsis thaliana GN=ABCG22 PE=1 SV=1)

HSP 1 Score: 95.9005 bits (237), Expect = 2.337e-19
Identity = 63/189 (33.33%), Postives = 103/189 (54.50%), Query Frame = 2
Query:  161 AAVAVSLLFRLFTGPGPALVTDDDSAYGDDDERNDVAEANGDGEAPVDGKVFPVTIRWQNITCSLSDK--SSKSVRFLLNNVSGEAKPGRLLAIMGPSGSGKTTLLNVLAGQLMASPRLHLSGLLEVNGKP-SSNKAYKFAYVRQEDLFFSQLTVRETLSLAAELQLPEILSVEERDEYVNSLLFKLGL 718
            A++ +S  F  F  P   +   D   + DD+   +  EA             P+ ++++++T  +  K  +S   + +L  +SG   PG +LA+MGPSGSGKTTLL++LAG++  S      G +  N KP S     K  +V Q+D+ F  LTV+ETL+ AA L+LP+ L+ E++ +    ++ +LGL
Sbjct:  104 ASLGLSFSFTGFAMPPEEI--SDSKPFSDDEMIPEDIEAGKKKPKFQAEPTLPIFLKFRDVTYKVVIKKLTSSVEKEILTGISGSVNPGEVLALMGPSGSGKTTLLSLLAGRISQS---STGGSVTYNDKPYSKYLKSKIGFVTQDDVLFPHLTVKETLTYAARLRLPKTLTREQKKQRALDVIQELGL 287          
BLAST of FC868711 vs. ExPASy Swiss-Prot
Match: AB17G_ARATH (ABC transporter G family member 17 OS=Arabidopsis thaliana GN=ABCG17 PE=2 SV=1)

HSP 1 Score: 94.7449 bits (234), Expect = 5.207e-19
Identity = 53/122 (43.44%), Postives = 77/122 (63.11%), Query Frame = 2
Query:  365 SSKSVRFLLNNVSGEAKPGRLLAIMGPSGSGKTTLLNVLAGQLMASPRLHLSGLLEVNGKPSSNKAYKF--AYVRQEDLFFSQLTVRETLSLAAELQLPEILSVEERDEYVNSLLFKLGLVS 724
            S   ++ LLN ++GEAK G +LAI+G SG+GK+TL++ LAGQ+       L G + +NG+   ++  +   AYV QEDL F  LTV ETL  AAE +LP  LS  ++   V +L+ +LGL +
Sbjct:   44 SPAKIKTLLNGITGEAKEGEILAILGASGAGKSTLIDALAGQIAEG---SLKGTVTLNGEALQSRLLRVISAYVMQEDLLFPMLTVEETLMFAAEFRLPRSLSKSKKRNRVETLIDQLGLTT 162          
BLAST of FC868711 vs. ExPASy Swiss-Prot
Match: PDH1_CANGA (ATP-binding cassette transporter CGR1 OS=Candida glabrata GN=PDH1 PE=3 SV=3)

HSP 1 Score: 90.5077 bits (223), Expect = 9.819e-18
Identity = 54/156 (34.62%), Postives = 86/156 (55.13%), Query Frame = 2
Query:  239 YGDDDERNDVAEANGDGEAPVDGKVFPVTIRWQNITCSLSDKSSKSVRFLLNNVSGEAKPGRLLAIMGPSGSGKTTLLNVLAGQLMASPRLHLSGLLEVNGKP-SSNKAYKFAYVRQEDLFFSQLTVRETLSLAAELQLPEILSVEERDEYVNSLL 703
            Y ++ +   +   +  G   V          WQN+   +  K+   VR +LNNV G  KPG L A+MG SG+GKTTLL+ LA +        ++G + VNG+P  ++ +    Y +Q+DL     TVRE+L  +A L+ P  +S+EE++EYV +++
Sbjct:  856 YDENADSESITSGSRGGSPQVGLSKSEAIFHWQNLCYDVPIKTE--VRRILNNVDGWVKPGTLTALMGASGAGKTTLLDCLAERTTMGV---ITGDVMVNGRPRDTSFSRSIGYCQQQDLHLKTATVRESLRFSAYLRQPSSVSIEEKNEYVEAVI 1006          
BLAST of FC868711 vs. ExPASy Swiss-Prot
Match: AB2G_ARATH (ABC transporter G family member 2 OS=Arabidopsis thaliana GN=ABCG2 PE=2 SV=1)

HSP 1 Score: 90.1225 bits (222), Expect = 1.282e-17
Identity = 52/122 (42.62%), Postives = 78/122 (63.93%), Query Frame = 2
Query:  365 SSKSVRFLLNNVSGEAKPGRLLAIMGPSGSGKTTLLNVLAGQLMASPRLHLSGLLEVNGK--PSSNKAYKFAYVRQEDLFFSQLTVRETLSLAAELQLPEILSVEERDEYVNSLLFKLGLVS 724
            SS + + LLN +SGEA+ G ++A++G SGSGK+TL++ LA ++       L G + +NG+   SS +    AYV Q+DL F  LTV ETL  +AE +LP  LS +++   V +L+ +LGL S
Sbjct:  126 SSVNTKILLNGISGEAREGEMMAVLGASGSGKSTLIDALANRIAKD---SLRGSITLNGEVLESSMQKVISAYVMQDDLLFPMLTVEETLMFSAEFRLPRSLSKKKKKARVQALIDQLGLRS 244          
The following BLAST results are available for this feature:
BLAST of FC868711 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 100
Match NameE-valueIdentityDescription
AB7G_ARATH4.477e-7973.71ABC transporter G family member 7 OS=Arabidopsis t... [more]
AB27G_ARATH3.484e-2335.45ABC transporter G family member 27 OS=Arabidopsis ... [more]
AB15G_ARATH5.563e-2142.75ABC transporter G family member 15 OS=Arabidopsis ... [more]
AB12G_ARATH1.619e-2041.98ABC transporter G family member 12 OS=Arabidopsis ... [more]
AB13G_ARATH4.709e-2041.98ABC transporter G family member 13 OS=Arabidopsis ... [more]
AB21G_ARATH1.370e-1935.88ABC transporter G family member 21 OS=Arabidopsis ... [more]
AB22G_ARATH2.337e-1933.33ABC transporter G family member 22 OS=Arabidopsis ... [more]
AB17G_ARATH5.207e-1943.44ABC transporter G family member 17 OS=Arabidopsis ... [more]
PDH1_CANGA9.819e-1834.62ATP-binding cassette transporter CGR1 OS=Candida g... [more]
AB2G_ARATH1.282e-1742.62ABC transporter G family member 2 OS=Arabidopsis t... [more]

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Properties
Property NameValue
Genbank descriptionC31003G11EF AbioticL1 Citrus clementina cDNA clone C31003G11, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>FC868711 ID=FC868711; Name=FC868711; organism=Citrus clementina; type=EST; length=725bp
GCTACTCCAGTTGCACTGCTGCAACGGAGGCTAAGCAACAAGAAGATAAA
GTTAAAATTAAATTTTATAAATAAAAAAGACAAAAATGGTGAATTTTGGA
GGGAATAAGGTGGGCCAAGTGGTGGCAGGAATTGGCGGGAACGGCGTAGG
CCAGGTACTGGCAGCCGTTGCCGTCTCTCTTTTGTTCCGCTTGTTTACTG
GACCTGGTCCGGCATTGGTAACAGATGACGACTCTGCCTATGGTGACGAC
GATGAAAGAAACGACGTCGCAGAAGCTAATGGTGACGGTGAAGCTCCGGT
TGACGGCAAAGTCTTCCCGGTCACCATCCGTTGGCAAAACATCACTTGCT
CCCTGTCCGATAAATCCTCAAAATCAGTGCGGTTTCTTCTAAATAATGTG
AGTGGAGAGGCGAAACCTGGAAGATTATTGGCGATAATGGGACCGTCAGG
GTCAGGGAAAACAACGTTGCTGAATGTTCTGGCGGGTCAGTTAATGGCAT
CGCCACGATTACATTTATCCGGCCTATTGGAAGTCAATGGAAAACCTAGT
TCAAACAAAGCTTATAAGTTTGCCTATGTGAGACAGGAGGATCTTTTTTT
CTCTCAGTTGACAGTGCGGGAAACACTCTCTCTTGCAGCTGAACTTCAGC
TTCCAGAAATACTTTCTGTGGAAGAGAGAGATGAATATGTGAACAGTCTT
TTATTCAAGCTGGGCTTGGTCAGTT
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