FC868744

Overview
NameFC868744
Unique NameFC868744
TypeEST
OrganismCitrus clementina (Clementine)
Sequence length436
Libraries
Library NameType
AbioticL1cdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Alignments
Feature NameTypeLocationAnalysis
Ccv1_Contig15341 contig Ccv1_Contig15341:84..519. BLAST: Citrus Unigene V1 Contigs to Prunus persica proteins V1
Homology
BLAST of FC868744 vs. ExPASy Swiss-Prot
Match: G3PC_MAGLI (Glyceraldehyde-3-phosphate dehydrogenase, cytosolic OS=Magnolia liliiflora GN=GAPC PE=2 SV=1)

HSP 1 Score: 235.343 bits (599), Expect = 7.866e-62
Identity = 116/142 (81.69%), Postives = 122/142 (85.92%), Query Frame = 3
Query:    3 KKIKIGISGFGRIGRLVARVALQRDDVELVAVNDPFISTDYMTYMFKYDSVHGQWKHNELKVKDEKTLLFGEKPVAVFGFRNPEEIPWAKTGAEYVVESTGVFTXXXXXXXXXXXXXXXVVISAPSKDAPMFVVGVNEKEYK 428
            KKIKIGI+GFGRIGRLVARVALQRDDVELVAVNDPFI+TDYMTYMFKYDSVHGQWKH+ELKVKD KTLLFGEKPV VFG RNPEEIPW +TGAE+VVESTGVFT               V+ISAPSKDAPMFVVGVNE EYK
Sbjct:    4 KKIKIGINGFGRIGRLVARVALQRDDVELVAVNDPFITTDYMTYMFKYDSVHGQWKHHELKVKDSKTLLFGEKPVTVFGVRNPEEIPWGETGAEFVVESTGVFTDKDKAAAHLKGGAKKVIISAPSKDAPMFVVGVNEHEYK 145          
BLAST of FC868744 vs. ExPASy Swiss-Prot
Match: G3PC_ARATH (Glyceraldehyde-3-phosphate dehydrogenase, cytosolic OS=Arabidopsis thaliana GN=GAPC PE=2 SV=2)

HSP 1 Score: 234.572 bits (597), Expect = 1.342e-61
Identity = 114/144 (79.17%), Postives = 123/144 (85.42%), Query Frame = 3
Query:    3 KKIKIGISGFGRIGRLVARVALQRDDVELVAVNDPFISTDYMTYMFKYDSVHGQWKHNELKVKDEKTLLFGEKPVAVFGFRNPEEIPWAKTGAEYVVESTGVFTXXXXXXXXXXXXXXXVVISAPSKDAPMFVVGVNEKEYKPE 434
            KKI+IGI+GFGRIGRLVARV LQRDDVELVAVNDPFI+T+YMTYMFKYDSVHGQWKHNELK+KDEKTLLFGEKPV VFG RNPE+IPWA+ GA+YVVESTGVFT               VVISAPSKDAPMFVVGVNE EYK +
Sbjct:    4 KKIRIGINGFGRIGRLVARVVLQRDDVELVAVNDPFITTEYMTYMFKYDSVHGQWKHNELKIKDEKTLLFGEKPVTVFGIRNPEDIPWAEAGADYVVESTGVFTDKDKAAAHLKGGAKKVVISAPSKDAPMFVVGVNEHEYKSD 147          
BLAST of FC868744 vs. ExPASy Swiss-Prot
Match: G3PC_PETHY (Glyceraldehyde-3-phosphate dehydrogenase, cytosolic OS=Petunia hybrida GN=GAPC PE=2 SV=1)

HSP 1 Score: 231.876 bits (590), Expect = 8.697e-61
Identity = 113/143 (79.02%), Postives = 121/143 (84.62%), Query Frame = 3
Query:    6 KIKIGISGFGRIGRLVARVALQRDDVELVAVNDPFISTDYMTYMFKYDSVHGQWKHNELKVKDEKTLLFGEKPVAVFGFRNPEEIPWAKTGAEYVVESTGVFTXXXXXXXXXXXXXXXVVISAPSKDAPMFVVGVNEKEYKPE 434
            KIKIGI+GFGRIGRLVARVALQRDDVELVAVNDPFIS +YMTYMFKYDSVHGQWKH+ELK KD+KTLLFGEKPV VFG RNPEEIPW + GA+YVVESTGVFT               V+ISAPSKDAPMFVVGVNEKEYK +
Sbjct:    3 KIKIGINGFGRIGRLVARVALQRDDVELVAVNDPFISVEYMTYMFKYDSVHGQWKHHELKAKDDKTLLFGEKPVTVFGIRNPEEIPWGEAGADYVVESTGVFTDKDKAAAHLKGGAKKVIISAPSKDAPMFVVGVNEKEYKSD 145          
BLAST of FC868744 vs. ExPASy Swiss-Prot
Match: G3PC_ANTMA (Glyceraldehyde-3-phosphate dehydrogenase, cytosolic OS=Antirrhinum majus GN=GAPC PE=2 SV=1)

HSP 1 Score: 231.106 bits (588), Expect = 1.484e-60
Identity = 116/142 (81.69%), Postives = 121/142 (85.21%), Query Frame = 3
Query:    9 IKIGISGFGRIGRLVARVALQRDDVELVAVNDPFISTDYMTYMFKYDSVHGQWKHNELKVKDEKTLLFGEKPVAVFGFRNPEEIPWAKTGAEYVVESTGVFTXXXXXXXXXXXXXXXVVISAPSKDAPMFVVGVNEKEYKPE 434
            IKIGI+GFGRIGRLVARVALQRDDVELVAVNDPFISTDYMTYMFKYDSVHG WKH+ELKVKDEKTLLFGEKPV VFG RNPEEIP A TGAEY+VESTGVFT               V+ISAPSKDAPMFVVGVNEKEYK +
Sbjct:    4 IKIGINGFGRIGRLVARVALQRDDVELVAVNDPFISTDYMTYMFKYDSVHGAWKHHELKVKDEKTLLFGEKPVVVFGRRNPEEIPRASTGAEYIVESTGVFTDKDKAAAHLKGGAKKVIISAPSKDAPMFVVGVNEKEYKSD 145          
BLAST of FC868744 vs. ExPASy Swiss-Prot
Match: G3PC_SINAL (Glyceraldehyde-3-phosphate dehydrogenase, cytosolic OS=Sinapis alba GN=GAPC PE=2 SV=2)

HSP 1 Score: 230.72 bits (587), Expect = 1.938e-60
Identity = 113/144 (78.47%), Postives = 122/144 (84.72%), Query Frame = 3
Query:    3 KKIKIGISGFGRIGRLVARVALQRDDVELVAVNDPFISTDYMTYMFKYDSVHGQWKHNELKVKDEKTLLFGEKPVAVFGFRNPEEIPWAKTGAEYVVESTGVFTXXXXXXXXXXXXXXXVVISAPSKDAPMFVVGVNEKEYKPE 434
            KKIKIGI+GFGRIGRLVARV LQR+DVELVAVNDPFI+T+YMTYMFKYDSVHGQWKHNELKVKDEKTLLFGEKPV VFG RNPE+IPW + GA++VVESTGVFT               VVISAPSKDAPMFVVGVNE EYK +
Sbjct:    4 KKIKIGINGFGRIGRLVARVILQRNDVELVAVNDPFITTEYMTYMFKYDSVHGQWKHNELKVKDEKTLLFGEKPVTVFGIRNPEDIPWGEAGADFVVESTGVFTDKDKAAAHLKGGAKKVVISAPSKDAPMFVVGVNEHEYKSD 147          
BLAST of FC868744 vs. ExPASy Swiss-Prot
Match: G3PE_MAIZE (Glyceraldehyde-3-phosphate dehydrogenase, cytosolic 3 OS=Zea mays GN=GAPC3 PE=2 SV=1)

HSP 1 Score: 230.335 bits (586), Expect = 2.530e-60
Identity = 115/143 (80.42%), Postives = 120/143 (83.92%), Query Frame = 3
Query:    6 KIKIGISGFGRIGRLVARVALQRDDVELVAVNDPFISTDYMTYMFKYDSVHGQWKHNELKVKDEKTLLFGEKPVAVFGFRNPEEIPWAKTGAEYVVESTGVFTXXXXXXXXXXXXXXXVVISAPSKDAPMFVVGVNEKEYKPE 434
            KIKIGI+GFGRIGRLVARVALQ DDVELVAVNDPFISTDYMTYMFKYD+VHGQWKH+E+KVKD KTLLFGEK VAVFG RNPEEIPW   GAEYVVESTGVFT               VVISAPSKDAPMFVVGVNEKEYK +
Sbjct:    3 KIKIGINGFGRIGRLVARVALQSDDVELVAVNDPFISTDYMTYMFKYDTVHGQWKHHEVKVKDSKTLLFGEKEVAVFGCRNPEEIPWGSVGAEYVVESTGVFTDQEKAAAHLKGGAKKVVISAPSKDAPMFVVGVNEKEYKSD 145          
BLAST of FC868744 vs. ExPASy Swiss-Prot
Match: G3PC_CRAPL (Glyceraldehyde-3-phosphate dehydrogenase, cytosolic OS=Craterostigma plantagineum GN=GAPC PE=2 SV=1)

HSP 1 Score: 228.794 bits (582), Expect = 7.363e-60
Identity = 112/143 (78.32%), Postives = 122/143 (85.31%), Query Frame = 3
Query:    6 KIKIGISGFGRIGRLVARVALQRDDVELVAVNDPFISTDYMTYMFKYDSVHGQWKHNELKVKDEKTLLFGEKPVAVFGFRNPEEIPWAKTGAEYVVESTGVFTXXXXXXXXXXXXXXXVVISAPSKDAPMFVVGVNEKEYKPE 434
            K+KIGI+GFGRIGRLVARVAL RDDVELVAVNDPFI+ DYM YMFKYD+VHGQ+KH+ELKVKDEKTLLFG+KPVAVFG RNPEEIPWA+TGAEYVVESTGVFT               V+ISAPSKDAPMFVVGVNEK Y P+
Sbjct:    3 KVKIGINGFGRIGRLVARVALVRDDVELVAVNDPFITVDYMAYMFKYDTVHGQYKHHELKVKDEKTLLFGDKPVAVFGLRNPEEIPWAETGAEYVVESTGVFTEKEKAAAHLKGGAKKVIISAPSKDAPMFVVGVNEKTYTPD 145          
BLAST of FC868744 vs. ExPASy Swiss-Prot
Match: G3P_ATRNU (Glyceraldehyde-3-phosphate dehydrogenase OS=Atriplex nummularia PE=2 SV=1)

HSP 1 Score: 228.409 bits (581), Expect = 9.616e-60
Identity = 111/143 (77.62%), Postives = 120/143 (83.92%), Query Frame = 3
Query:    6 KIKIGISGFGRIGRLVARVALQRDDVELVAVNDPFISTDYMTYMFKYDSVHGQWKHNELKVKDEKTLLFGEKPVAVFGFRNPEEIPWAKTGAEYVVESTGVFTXXXXXXXXXXXXXXXVVISAPSKDAPMFVVGVNEKEYKPE 434
            K+KIGI+GFGRIGRLVARV LQ DD ELVA+NDPFI+TDYMTYMFKYDSVHGQWKH+ELKVKDEKTLLFGE+PV VFG RNPEEIPW +TGA+YVVESTGVFT               V+ISAPSKDAPMFVVGVNE EYK E
Sbjct:    3 KVKIGINGFGRIGRLVARVILQSDDCELVAINDPFITTDYMTYMFKYDSVHGQWKHHELKVKDEKTLLFGERPVTVFGNRNPEEIPWGQTGADYVVESTGVFTDKDKAAAHLKGGAKKVIISAPSKDAPMFVVGVNEHEYKSE 145          
BLAST of FC868744 vs. ExPASy Swiss-Prot
Match: G3PC_RANAC (Glyceraldehyde-3-phosphate dehydrogenase, cytosolic OS=Ranunculus acris GN=GAPC PE=2 SV=1)

HSP 1 Score: 228.024 bits (580), Expect = 1.256e-59
Identity = 113/143 (79.02%), Postives = 120/143 (83.92%), Query Frame = 3
Query:    6 KIKIGISGFGRIGRLVARVALQRDDVELVAVNDPFISTDYMTYMFKYDSVHGQWKHNELKVKDEKTLLFGEKPVAVFGFRNPEEIPWAKTGAEYVVESTGVFTXXXXXXXXXXXXXXXVVISAPSKDAPMFVVGVNEKEYKPE 434
            KIKIGI+GFGRIGRLVARVAL RDDVELVAVNDPFI+TDYMTYMFKYD+VHGQWKH+ELKVKDEKTLLFGEKPV VFG RNPEEIPW +TGAE+VVESTGVFT               VVISAPS DAPMFVVGVN  EYK +
Sbjct:    4 KIKIGINGFGRIGRLVARVALARDDVELVAVNDPFITTDYMTYMFKYDTVHGQWKHHELKVKDEKTLLFGEKPVTVFGCRNPEEIPWGETGAEFVVESTGVFTTKEKASAHLKGGAKKVVISAPSADAPMFVVGVNHTEYKSD 146          
BLAST of FC868744 vs. ExPASy Swiss-Prot
Match: G3PC_PEA (Glyceraldehyde-3-phosphate dehydrogenase, cytosolic OS=Pisum sativum GN=GAPC1 PE=2 SV=1)

HSP 1 Score: 224.557 bits (571), Expect = 1.389e-58
Identity = 110/143 (76.92%), Postives = 119/143 (83.22%), Query Frame = 3
Query:    6 KIKIGISGFGRIGRLVARVALQRDDVELVAVNDPFISTDYMTYMFKYDSVHGQWKHNELKVKDEKTLLFGEKPVAVFGFRNPEEIPWAKTGAEYVVESTGVFTXXXXXXXXXXXXXXXVVISAPSKDAPMFVVGVNEKEYKPE 434
            KIKIGI+GFGRIGRLVARVAL+RDDVELVAVNDPFI+TDYMTYMFKYDSVHGQWK++EL VKD  TLLFG+KPV VF  RNPEEIPWA TGA+ +VESTGVFT               V+ISAPSKDAPMFVVGVNE EYKPE
Sbjct:    4 KIKIGINGFGRIGRLVARVALKRDDVELVAVNDPFITTDYMTYMFKYDSVHGQWKNDELTVKDSNTLLFGQKPVTVFAHRNPEEIPWASTGADIIVESTGVFTDKDKAAAHLKGGAKKVIISAPSKDAPMFVVGVNENEYKPE 146          
The following BLAST results are available for this feature:
BLAST of FC868744 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 249
Match NameE-valueIdentityDescription
G3PC_MAGLI7.866e-6281.69Glyceraldehyde-3-phosphate dehydrogenase, cytosoli... [more]
G3PC_ARATH1.342e-6179.17Glyceraldehyde-3-phosphate dehydrogenase, cytosoli... [more]
G3PC_PETHY8.697e-6179.02Glyceraldehyde-3-phosphate dehydrogenase, cytosoli... [more]
G3PC_ANTMA1.484e-6081.69Glyceraldehyde-3-phosphate dehydrogenase, cytosoli... [more]
G3PC_SINAL1.938e-6078.47Glyceraldehyde-3-phosphate dehydrogenase, cytosoli... [more]
G3PE_MAIZE2.530e-6080.42Glyceraldehyde-3-phosphate dehydrogenase, cytosoli... [more]
G3PC_CRAPL7.363e-6078.32Glyceraldehyde-3-phosphate dehydrogenase, cytosoli... [more]
G3P_ATRNU9.616e-6077.62Glyceraldehyde-3-phosphate dehydrogenase OS=Atripl... [more]
G3PC_RANAC1.256e-5979.02Glyceraldehyde-3-phosphate dehydrogenase, cytosoli... [more]
G3PC_PEA1.389e-5876.92Glyceraldehyde-3-phosphate dehydrogenase, cytosoli... [more]

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Properties
Property NameValue
Genbank descriptionC31004C06EF AbioticL1 Citrus clementina cDNA clone C31004C06, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>FC868744 ID=FC868744; Name=FC868744; organism=Citrus clementina; type=EST; length=436bp
GCAAGAAGATTAAGATCGGAATCTCCGGTTTCGGAAGGATCGGCCGTTTG
GTTGCGAGAGTCGCACTCCAGAGGGATGATGTGGAGCTGGTGGCTGTCAA
CGATCCTTTCATCTCCACTGATTACATGACATACATGTTTAAGTACGATA
GTGTTCACGGTCAGTGGAAGCACAACGAGTTGAAGGTCAAGGACGAGAAG
ACCCTCCTCTTCGGTGAGAAGCCAGTCGCTGTTTTCGGATTCAGGAACCC
AGAGGAGATCCCATGGGCAAAGACTGGAGCCGAGTATGTTGTGGAATCAA
CTGGAGTGTTCACTGACAAGGACAAGGCTGCTGCTCACTTGAAGGGTGGT
GCCAAGAAGGTCGTTATCTCCGCCCCTAGCAAGGATGCTCCCATGTTTGT
TGTGGGCGTCAACGAGAAAGAATACAAGCCAGAGCT
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