FC868748

Overview
NameFC868748
Unique NameFC868748
TypeEST
OrganismCitrus clementina (Clementine)
Sequence length762
Libraries
Library NameType
AbioticL1cdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Alignments
Feature NameTypeLocationAnalysis
Ccv1_Contig9390 contig Ccv1_Contig9390:1..762. BLAST: Citrus Unigene V1 Contigs to Prunus persica proteins V1
Homology
BLAST of FC868748 vs. ExPASy Swiss-Prot
Match: DS1PP_SCHPO (Dihydrosphingosine 1-phosphate phosphatase C823.11 OS=Schizosaccharomyces pombe GN=SPAC823.11 PE=2 SV=1)

HSP 1 Score: 81.6481 bits (200), Expect = 5.028e-15
Identity = 53/178 (29.78%), Postives = 83/178 (46.63%), Query Frame = 1
Query:  205 QKLRSLLQPWVTHYVIIGTPFILQIQKY-QHKFLDSLFSGLSCVVSVPFYTGFLPVVFWSGHVKLARHMTLLMAFCDYLGNTIKDTVSAPRPSCPPVRRVTATKDEKENALEYGLPSSHTLNTVCLAGYLLHYVLSYSQNNYAVTQFXXXXXXXXXXXXXXXXRIYLGMHSLVDIIAG 735
            + LR  L+  +   V   T  + +IQ + ++ +LD  F   + + +  F+   LP+ FWSG +     +T L A   Y    IKD    PRP  PP+ R+T + D +    EYG PS+HT N +    Y L  +LS S +  +++ +                RIY GMH  +D+  G
Sbjct:   32 ESLRFQLRELILPIVRKETRLLYKIQSFFRNPWLDVYFMYTATLGTHVFFMLALPIFFWSGCIYYTLDITQLFAAGVYFSGCIKDYFCLPRPRSPPMVRLTLSSDAE---YEYGFPSTHTTNAMATGFYSLFLLLSMSDSMSSISYYFLLSLVLLYIASISLGRIYCGMHGFMDVSTG 206          
BLAST of FC868748 vs. ExPASy Swiss-Prot
Match: DS1P1_YEAST (Dihydrosphingosine 1-phosphate phosphatase LCB3 OS=Saccharomyces cerevisiae GN=LCB3 PE=1 SV=1)

HSP 1 Score: 77.7962 bits (190), Expect = 7.261e-14
Identity = 46/152 (30.26%), Postives = 71/152 (46.71%), Query Frame = 1
Query:  280 QKYQHKFLDSLFSGLSCVVSVPFYTGFLPVVFWSGHVKLARHMTLLMAFCDYLGNTIKDTVSAPRPSCPPVRRVTATKDEKENALEYGLPSSHTLNTVCLAGYLLHYVLSYSQNNYAVTQFXXXXXXXXXXXXXXXXRIYLGMHSLVDIIAG 735
            +KY+  F D  F+  S + S  FY   LP+  W G+ +  + M  ++ +  YL    KD    PRP  PP+ R+T +   +    EYG PSSHT N   ++  L  Y +   Q +  + Q                 RIY GMH ++D+++G
Sbjct:   71 KKYRSAFNDLYFTYTSLMGSHTFYVLCLPMPVWFGYFETTKDMVYILGYSIYLSGFFKDYWCLPRPRAPPLHRITLS---EYTTKEYGAPSSHTANATGVS-LLFLYNIWRMQESSVMVQLLLSCVVLFYYMTLVFGRIYCGMHGILDLVSG 218          
BLAST of FC868748 vs. ExPASy Swiss-Prot
Match: DS1P2_YEAST (Dihydrosphingosine 1-phosphate phosphatase YSR3 OS=Saccharomyces cerevisiae GN=YSR3 PE=2 SV=2)

HSP 1 Score: 75.485 bits (184), Expect = 3.603e-13
Identity = 51/178 (28.65%), Postives = 81/178 (45.51%), Query Frame = 1
Query:  211 LRSLLQPWVTHYVIIGTPFILQIQK-YQHKFLDSLFSGLSCVVSVPFYTGFLPVVFWSGHVKLARHMTLLMAFCDYLGNTIKDTVSAPRPSCPPVRRVTATKDEKENALEYGLPSSHTLNTVCLAGYLLHYVLSYSQNNYAVTQFXXXXXXXXXXXXXXXXRIYLGMHSLVDIIAGWA 741
            LR   + ++T +    + F+  +QK ++  F D  F   S + S  FY   LP+  W G+  L R M  ++ +  YL   +KD    PRP  PPV R+T +   +    EYG PSSH+ N   ++  L  + +  S      T+                 R+Y GMH ++D+ +G A
Sbjct:   48 LRFQTRQYLTRFTDNQSDFVHSLQKKHRTPFRDVYFKYTSLMGSHMFYVIVLPMPVWLGYRDLTRDMIYVLGYSIYLSGYLKDYWCLPRPKSPPVDRITLS---EYTTKEYGAPSSHSANATAVS-LLFFWRICLSDTLVWPTKLLLLSLVIFYYLTLVFGRVYCGMHGMLDLFSGAA 221          
BLAST of FC868748 vs. ExPASy Swiss-Prot
Match: SGPP2_HUMAN (Sphingosine-1-phosphate phosphatase 2 OS=Homo sapiens GN=SGPP2 PE=2 SV=1)

HSP 1 Score: 68.9366 bits (167), Expect = 3.373e-11
Identity = 46/155 (29.68%), Postives = 69/155 (44.52%), Query Frame = 1
Query:  277 IQKYQHK--FLDSLFSGLSCVVSVPFYTGFLPVVFWSGHVKLARHMTLLMAFCDYLGNTIKDTVSAPRPSCPPVRRVTATKDEKENALEYGLPSSHTLNTVCLAGYLLHYVLSYSQNNYAVTQFXXXXXXXXXXXXXXXXRIYLGMHSLVDIIAG 735
            +QKY  K  F   LF   + +    FY  FLP   W+    L+R + ++     Y+G   KD +  PRPS PPV      K EK    EYG+PS+H +    +A  LL   +   Q  + +                   R+Y GMH+++D++ G
Sbjct:   76 VQKYVVKNYFYYYLFQFSAALGQEVFYITFLPFTHWNIDPYLSRRLIIIWVLVMYIGQVAKDVLKWPRPSSPPV-----VKLEKRLIAEYGMPSTHAMAATAIAFTLLISTMDRYQYPFVL----GLVMAVVFSTLVCLSRLYTGMHTVLDVLGG 221          
The following BLAST results are available for this feature:
BLAST of FC868748 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 4
Match NameE-valueIdentityDescription
DS1PP_SCHPO5.028e-1529.78Dihydrosphingosine 1-phosphate phosphatase C823.11... [more]
DS1P1_YEAST7.261e-1430.26Dihydrosphingosine 1-phosphate phosphatase LCB3 OS... [more]
DS1P2_YEAST3.603e-1328.65Dihydrosphingosine 1-phosphate phosphatase YSR3 OS... [more]
SGPP2_HUMAN3.373e-1129.68Sphingosine-1-phosphate phosphatase 2 OS=Homo sapi... [more]
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Properties
Property NameValue
Genbank descriptionC31004C10EF AbioticL1 Citrus clementina cDNA clone C31004C10, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>FC868748 ID=FC868748; Name=FC868748; organism=Citrus clementina; type=EST; length=762bp
GCAAGACAATTCAACAAAGATTTCCATTTTTTCTCTGTATATTCAAAATC
ACTCTCTCTAAAGTCTTCTTCCTTTTGATTTTTGATCCCTCTCTCATTGA
AGAGGGAAGAAGATAAAATGGAGAGCGTATTAGCAGCGTGGCAAGTGGCG
ACCTTAGGTGGGATTGTGTCGTGGATTATGATATCTTCATGTCTAAATGT
GACTCAAAAGCTCAGATCTTTGCTGCAGCCTTGGGTGACTCACTATGTCA
TCATTGGCACCCCTTTCATTCTCCAGATCCAGAAATACCAGCATAAGTTT
TTGGATTCTCTGTTTTCTGGCTTGTCTTGCGTTGTTTCAGTGCCATTTTA
CACTGGATTTTTGCCTGTGGTCTTCTGGAGCGGGCATGTGAAACTGGCTC
GGCACATGACTCTTTTGATGGCCTTTTGTGATTATTTGGGGAACACTATA
AAGGATACAGTATCAGCTCCTAGACCAAGTTGCCCTCCTGTGAGGAGAGT
AACTGCCACAAAAGATGAGAAAGAGAATGCCTTGGAATATGGATTGCCTT
CTTCTCACACTCTCAATACAGTTTGCTTAGCAGGATATCTTTTGCACTAT
GTCCTATCTTATTCCCAAAATAATTATGCCGTTACTCAGTTTGCTGGAGT
TGCCCTTCTTTGCTTGCTTGTGGGCCTCATTGCTGTAGGAAGAATTTACC
TTGGCATGCACAGTTTGGTTGACATCATTGCCGGCTGGGCTTAGATTGGC
GTCCTGCATTTG
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