FC868783

Overview
NameFC868783
Unique NameFC868783
TypeEST
OrganismCitrus clementina (Clementine)
Sequence length721
Libraries
Library NameType
AbioticL1cdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Alignments
Feature NameTypeLocationAnalysis
Ccv1_Contig8507 contig Ccv1_Contig8507:227..949. BLAST: Citrus Unigene V1 Contigs to Prunus persica proteins V1
Homology
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BLAST of FC868783 vs. ExPASy Swiss-Prot
Match: TSJT1_TOBAC (Stem-specific protein TSJT1 OS=Nicotiana tabacum GN=TSJT1 PE=2 SV=1)

HSP 1 Score: 114.005 bits (284), Expect = 8.228e-25
Identity = 59/151 (39.07%), Postives = 90/151 (59.60%), Query Frame = 1 
Query:  121 MLAIFNKGLVNPPQELHSPASLSSSRKPKHPEEIFKEFLI-SQPSNAFSINFGNAAALAYVPPENPNSVSQRWFCGLHNIYCMFMGSLNNLSSLNKQYGLSKGSNEAMFVIEAYRTLRDRGPYPAHQVLRDLDGSFGFVLYDCKAGTIFAA 570
            MLA+F + +  PP EL  P +    ++ K  EEI + F    Q S  + +  GN  A ++    N N +  R    + +++C+F G+L+N   L K YGLS+ + EAM ++EAY+ LRDR PYP  QV+++L+G F F+L+D KA T+F A
Sbjct:    1 MLAVFEQSIGRPPPELSLPQAGIQKKEAKTREEIAESFKTWKQDSTFYHLFNGNFMAFSH---GNENPLQPRSIVVMDDVFCIFSGALDNTFDLRKHYGLSRQATEAMIMVEAYKVLRDRAPYPPDQVIKELEGKFAFILFDSKASTLFLA 148
The following BLAST results are available for this feature:
BLAST of FC868783 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 1
Match NameE-valueIdentityDescription
TSJT1_TOBAC8.228e-2539.07Stem-specific protein TSJT1 OS=Nicotiana tabacum G... [more]
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Properties
Property NameValue
Genbank descriptionC31004G02EF AbioticL1 Citrus clementina cDNA clone C31004G02, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>FC868783 ID=FC868783; Name=FC868783; organism=Citrus clementina; type=EST; length=721bp
GTCCTCTTCTGTTAATCAAACATAATCATTATCTTTGGTGAATTGTTGGT
TTATTATTTACGAGTTATATCTCTTTCTGAAGATCTGTATTTTTTTTCGT
CTGAAAGAAGAAAAGAGAAGATGTTGGCAATATTCAACAAAGGGTTAGTG
AATCCACCTCAAGAGCTACACAGCCCAGCTTCGTTGAGTTCATCAAGAAA
GCCGAAGCATCCTGAGGAGATTTTCAAGGAATTTTTAATTTCGCAGCCTT
CTAATGCTTTTTCAATCAACTTCGGAAATGCAGCTGCTCTCGCTTATGTG
CCACCAGAAAATCCCAACTCCGTCTCCCAAAGGTGGTTTTGTGGCTTACA
TAACATATACTGCATGTTCATGGGGAGCTTAAACAACTTGAGCAGCCTCA
ACAAACAATATGGGCTGTCAAAAGGCTCCAATGAGGCCATGTTTGTTATT
GAAGCATACCGGACCCTCCGTGATCGCGGCCCATACCCGGCTCATCAGGT
CCTGCGAGATCTTGATGGCAGCTTTGGTTTTGTGCTCTATGATTGCAAGG
CTGGAACTATATTTGCAGCACTGGATGCTGATGAAGGAGTGCGACTCTTC
TGGGGCATTGCAGCTGATGGGTCCGTGGTCATTTCTGACAATTTGGAGCT
TATAAAGNCAGTTGTGCCAAATCATTTGCACCGTTTCAGCCGGGTGCATG
TTTCACAGCGAGCAAGGGCTG
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