FC868803

Overview
NameFC868803
Unique NameFC868803
TypeEST
OrganismCitrus clementina (Clementine)
Sequence length692
Libraries
Library NameType
AbioticL1cdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Alignments
Feature NameTypeLocationAnalysis
Ccv1_Contig9449 contig Ccv1_Contig9449:8..700. BLAST: Citrus Unigene V1 Contigs to Prunus persica proteins V1
Homology
BLAST of FC868803 vs. ExPASy Swiss-Prot
Match: PSBS_SPIOL (Photosystem II 22 kDa protein, chloroplastic OS=Spinacia oleracea GN=PSBS PE=1 SV=1)

HSP 1 Score: 137.502 bits (345), Expect = 6.480e-32
Identity = 93/191 (48.69%), Postives = 108/191 (56.54%), Query Frame = 3
Query:   81 MAQTMLLMS-GVSTSHAGNLKRDSLVTFQTQMLRPKPF-SHLMFNPLSNEXXXXXXXXXXXXXXXXXXXFXXXXXXXXXXXXVESKPKVEDXXXXXXXXXXXXKQNELFVGRVAMIGFAASLLGEGITGKGILAQLNLETGIPIYEAEPXXXXXXXXXXXGAIGALGEPW*FVDEPDEPTGLGGAVIPQAK 647
            MAQ MLLM  GVST++  +LKR++L+  Q Q ++PK   S+L F+PL +                                  + K KVED            K+NELFVGRVAMIGFAASLLGEGITGKGIL+QLNLETGIPIYEAEP           GAIGALG+   FVDEP   TGL  AVIP  K
Sbjct:    1 MAQAMLLMMPGVSTTNTIDLKRNALLKLQIQKIKPKSSTSNLFFSPLPSSSSSSSTVFKTLALFKSKAKAPKKVE--------KPKLKVEDGLFGTSGGIGFTKENELFVGRVAMIGFAASLLGEGITGKGILSQLNLETGIPIYEAEPLLLFFILFTLLGAIGALGDRGRFVDEP--TTGLEKAVIPPGK 181          

HSP 2 Score: 71.2478 bits (173), Expect = 5.703e-12
Identity = 34/46 (73.91%), Postives = 39/46 (84.78%), Query Frame = 3
Query:  384 KQNELFVGRVAMIGFAASLLGEGITGKGILAQLNLETGIPIYEAEP 521
            K NELFVGR+A +GFA SL+GE ITGKG LAQLN+ETG+PI E EP
Sbjct:  200 KSNELFVGRLAQLGFAFSLIGEIITGKGALAQLNIETGVPINEIEP 245          
BLAST of FC868803 vs. ExPASy Swiss-Prot
Match: PSBS_TOBAC (Photosystem II 22 kDa protein, chloroplastic OS=Nicotiana tabacum GN=PSBS PE=2 SV=1)

HSP 1 Score: 128.257 bits (321), Expect = 3.931e-29
Identity = 85/189 (44.97%), Postives = 95/189 (50.26%), Query Frame = 3
Query:   81 MAQTMLLMSGVSTSHAGNLKRDSLVTFQTQMLRPKPFSHLMFNPLSNEXXXXXXXXXXXXXXXXXXXFXXXXXXXXXXXXVESKPKVEDXXXXXXXXXXXXKQNELFVGRVAMIGFAASLLGEGITGKGILAQLNLETGIPIYEAEPXXXXXXXXXXXGAIGALGEPW*FVDEPDEPTGLGGAVIPQAK 647
            MAQTMLL +           ++SLV    + L+PKP S      L  +                   F             + K KVED            KQNELFVGRVAMIGFAASLLGE ITGKGILAQLNLETGIPIYEAEP           GAIGAL +   F+D+P  PTGL  AVIP  K
Sbjct:    1 MAQTMLLTANAKVDLRS---KESLV----ERLKPKPLSSFFLPSLPLKYPSASASASSHFTSTTVALFKSKAKAPAKKVVPKPKEKVEDGIFGTSGGIGFTKQNELFVGRVAMIGFAASLLGEAITGKGILAQLNLETGIPIYEAEPLLLFFILFNLLGAIGALEDRGKFIDDPAPPTGLDKAVIPPGK 182          
BLAST of FC868803 vs. ExPASy Swiss-Prot
Match: PSBS_SOLLC (Photosystem II 22 kDa protein, chloroplastic OS=Solanum lycopersicum GN=PSBS PE=3 SV=1)

HSP 1 Score: 128.257 bits (321), Expect = 3.931e-29
Identity = 88/192 (45.83%), Postives = 97/192 (50.52%), Query Frame = 3
Query:   81 MAQTMLLMSGVSTSHAGNLKRDSLVTFQTQMLRPKPFSHLMFN--PLSNEXXXXXXXXXXXXXXXXXXXFXXXXXXXXXXXXVESKPKVEDXXXXXXXXXXXXKQNELFVGRVAMIGFAASLLGEGITGKGILAQLNLETGIPIYEAEPXXXXXXXXXXXGAIGALGEPW*FVDEPDEPTGLGGAVIPQAKA 650
            MAQTMLL +           ++SLV    + L+PKP S L     PL                                    + K KVED            KQNELFVGRVAMIGFAASLLGE ITGKGILAQLNLETGIPIYEAEP           GAIGALG+   FVD+P  PTGL  AVIP  K+
Sbjct:    1 MAQTMLLTANAKVDLRS---KESLV----ERLKPKPLSSLFLPSLPLRFSSSSTNASSSKFTSTTVALFKSKAKAPPKKVAPPKEKQKVEDGIFGTSGGIGFTKQNELFVGRVAMIGFAASLLGEAITGKGILAQLNLETGIPIYEAEPLLLFFILFNLLGAIGALGDRGKFVDDPTPPTGLEKAVIPPGKS 185          
BLAST of FC868803 vs. ExPASy Swiss-Prot
Match: PSBS_SOLSG (Photosystem II 22 kDa protein, chloroplastic OS=Solanum sogarandinum GN=PSBS PE=2 SV=1)

HSP 1 Score: 124.405 bits (311), Expect = 5.677e-28
Identity = 86/192 (44.79%), Postives = 96/192 (50.00%), Query Frame = 3
Query:   81 MAQTMLLMSGVSTSHAGNLKRDSLVTFQTQMLRPKPFSHLMFN--PLSNEXXXXXXXXXXXXXXXXXXXFXXXXXXXXXXXXVESKPKVEDXXXXXXXXXXXXKQNELFVGRVAMIGFAASLLGEGITGKGILAQLNLETGIPIYEAEPXXXXXXXXXXXGAIGALGEPW*FVDEPDEPTGLGGAVIPQAKA 650
            MAQTMLL +           ++SLV    + L+PKP S L     PL                                    + K KVED            KQNELFVGRVAMIGFAASLLGE ITGKGILAQLNLETGIPIYEAEP           GAIGALG+   F+D+P   TGL  AVIP  K+
Sbjct:    1 MAQTMLLTANAKVDLRS---KESLV----ERLKPKPLSSLFLPSLPLRFSSSTTNFSSSKFTSTTVALFKSKAKAPPKKVAPPKEKQKVEDGIFGTSGGIGFTKQNELFVGRVAMIGFAASLLGEAITGKGILAQLNLETGIPIYEAEPLLLFFILFNLLGAIGALGDRGRFIDDPAPATGLEKAVIPPGKS 185          
BLAST of FC868803 vs. ExPASy Swiss-Prot
Match: PSBS_ARATH (Photosystem II 22 kDa protein, chloroplastic OS=Arabidopsis thaliana GN=PSBS PE=1 SV=1)

HSP 1 Score: 118.627 bits (296), Expect = 1.551e-26
Identity = 68/106 (64.15%), Postives = 71/106 (66.98%), Query Frame = 3
Query:  330 KPKVEDXXXXXXXXXXXXKQNELFVGRVAMIGFAASLLGEGITGKGILAQLNLETGIPIYEAEPXXXXXXXXXXXGAIGALGEPW*FVDEPDEPTGLGGAVIPQAK 647
            K KVED            K NELFVGRVAMIGFAASLLGE +TGKGILAQLNLETGIPIYEAEP           GAIGALG+   FVD+P  PTGL  AVIP  K
Sbjct:   69 KSKVEDGIFGTSGGIGFTKANELFVGRVAMIGFAASLLGEALTGKGILAQLNLETGIPIYEAEPLLLFFILFTLLGAIGALGDRGKFVDDP--PTGLEKAVIPPGK 172          

HSP 2 Score: 21.9422 bits (45), Expect = 1.551e-26
Identity = 8/13 (61.54%), Postives = 13/13 (100.00%), Query Frame = 2
Query:  641 GKSLRSALGLRKE 679
            GK++RSALGL+++
Sbjct:  171 GKNVRSALGLKEQ 183          

HSP 3 Score: 68.1662 bits (165), Expect = 4.828e-11
Identity = 33/46 (71.74%), Postives = 38/46 (82.61%), Query Frame = 3
Query:  384 KQNELFVGRVAMIGFAASLLGEGITGKGILAQLNLETGIPIYEAEP 521
            K NELFVGR+A +G A SL+GE ITGKG LAQLN+ETGIPI + EP
Sbjct:  191 KANELFVGRLAQLGIAFSLIGEIITGKGALAQLNIETGIPIQDIEP 236          
The following BLAST results are available for this feature:
BLAST of FC868803 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 5
Match NameE-valueIdentityDescription
PSBS_SPIOL6.480e-3248.69Photosystem II 22 kDa protein, chloroplastic OS=Sp... [more]
PSBS_TOBAC3.931e-2944.97Photosystem II 22 kDa protein, chloroplastic OS=Ni... [more]
PSBS_SOLLC3.931e-2945.83Photosystem II 22 kDa protein, chloroplastic OS=So... [more]
PSBS_SOLSG5.677e-2844.79Photosystem II 22 kDa protein, chloroplastic OS=So... [more]
PSBS_ARATH1.551e-2664.15Photosystem II 22 kDa protein, chloroplastic OS=Ar... [more]
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Properties
Property NameValue
Genbank descriptionC31005A02EF AbioticL1 Citrus clementina cDNA clone C31005A02, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>FC868803 ID=FC868803; Name=FC868803; organism=Citrus clementina; type=EST; length=692bp
GCTAGTGAATCTGAAACAGTGAAACTAGCTTTGCTGGCTTGAGAAATCTA
GCAGAGTGACAACATATTCATTCAATATTAATGGCTCAAACTATGCTGCT
CATGTCTGGGGTTTCCACTAGCCACGCAGGAAACTTGAAAAGAGACTCTT
TAGTCACATTTCAAACGCAGATGCTGAGACCTAAGCCATTCTCTCATCTT
ATGTTCAACCCACTCTCTAATGAATCTTTAACTGCTGCTGCGGCTTCTTC
ATCGTCTAAAGCTTTTTCTACTGTTGCCCTCTTCAAATCTAAAACCAAAG
CTCCACCCAAGACCAAGAAGGTTGAATCAAAGCCAAAAGTTGAGGATGGT
ATCTTTGGGACCTCTGGAGGATTTGGTTTTACAAAGCAAAATGAGCTCTT
TGTTGGTCGTGTTGCCATGATTGGCTTTGCTGCTTCCTTGTTGGGTGAGG
GAATAACTGGGAAGGGGATTCTAGCTCAGTTGAATTTAGAGACCGGAATT
CCAATCTATGAAGCAGAGCCACTACTTTTATTTTTCATCTTGTTCACCTT
GCTTGGAGCAATTGGAGCTTTGGGTGAACCGTGGTAGTTCGTTGATGAGC
CAGATGAGCCCACTGGGCTCGGAGGAGCTGTCATTCCTCAGGCAAAAGCT
TAAGATCAGCGTTGGGTCTCAGGAAGGAGGTCCATATTTGGA
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