FC868832

Overview
NameFC868832
Unique NameFC868832
TypeEST
OrganismCitrus clementina (Clementine)
Sequence length690
Libraries
Library NameType
AbioticL1cdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of FC868832 vs. ExPASy Swiss-Prot
Match: CLCA_ARATH (Chloride channel protein CLC-a OS=Arabidopsis thaliana GN=CLC-A PE=1 SV=2)

HSP 1 Score: 189.504 bits (480), Expect = 5.064e-82
Identity = 96/128 (75.00%), Postives = 109/128 (85.16%), Query Frame = 1
Query:   91 MEENSNPVARATQAHMEADEEERDPESNSLQQPLLKRSRTLSSSPLALVGAKVSHIESLDYEINENDLFKHDWRSRSKVQVLQYIFLKWSLACLVGLLTGLIATLINLAVENIAGYKLLAVVSFIEKD 474
            M+E+ N   + + ++   +EE  DPE+N+L QPLLKR RTLSS+PLALVGAKVSHIESLDYEINENDLFKHDWRSRSK QV QYIFLKW+LACLVGL TGLIATLINLAVENIAGYKLLAV  +I +D
Sbjct:    1 MDEDGN--LQISNSNYNGEEEGEDPENNTLNQPLLKRHRTLSSTPLALVGAKVSHIESLDYEINENDLFKHDWRSRSKAQVFQYIFLKWTLACLVGLFTGLIATLINLAVENIAGYKLLAVGYYIAQD 126          

HSP 2 Score: 136.732 bits (343), Expect = 5.064e-82
Identity = 64/70 (91.43%), Postives = 68/70 (97.14%), Query Frame = 2
Query:  476 AGPGIPEIKAYLNGVDTPNMFGATTLIVKIIGSIGAVAAGLDLGKEGPLVHIGSCIASLLGXGGPDNHRI 685
            AGPGIPEIKAYLNG+DTPNMFG TT++VKI+GSIGAVAAGLDLGKEGPLVHIGSCIASLLG GGPDNHRI
Sbjct:  158 AGPGIPEIKAYLNGIDTPNMFGFTTMMVKIVGSIGAVAAGLDLGKEGPLVHIGSCIASLLGQGGPDNHRI 227          
BLAST of FC868832 vs. ExPASy Swiss-Prot
Match: CLCB_ARATH (Chloride channel protein CLC-b OS=Arabidopsis thaliana GN=CLC-B PE=1 SV=1)

HSP 1 Score: 181.03 bits (458), Expect = 1.029e-79
Identity = 89/110 (80.91%), Postives = 99/110 (90.00%), Query Frame = 1
Query:  151 EERDPESNSLQQPLLKRSRTLSSSPLALVGAKVSHIESLDYEINENDLFKHDWRSRSKVQVLQYIFLKWSLACLVGLLTGLIATLINLAVENIAGYKLLAVVSFIEKDSW 480
            E  DPESN+L QPL+K +RTLSS+PLALVGAKVSHIESLDYEINENDLFKHDWR RSK QVLQY+FLKW+LACLVGL TGLIATLINLAVENIAGYKLLAV  F+ ++ +
Sbjct:   18 EGGDPESNTLNQPLVKANRTLSSTPLALVGAKVSHIESLDYEINENDLFKHDWRKRSKAQVLQYVFLKWTLACLVGLFTGLIATLINLAVENIAGYKLLAVGHFLTQERY 127          

HSP 2 Score: 137.502 bits (345), Expect = 1.029e-79
Identity = 66/70 (94.29%), Postives = 68/70 (97.14%), Query Frame = 2
Query:  476 AGPGIPEIKAYLNGVDTPNMFGATTLIVKIIGSIGAVAAGLDLGKEGPLVHIGSCIASLLGXGGPDNHRI 685
            AGPGIPEIKAYLNGVDTPNMFGATT+IVKI+GSIGAVAAGLDLGKEGPLVHIGSCIASLLG GG DNHRI
Sbjct:  157 AGPGIPEIKAYLNGVDTPNMFGATTMIVKIVGSIGAVAAGLDLGKEGPLVHIGSCIASLLGQGGTDNHRI 226          
BLAST of FC868832 vs. ExPASy Swiss-Prot
Match: CLCC_ARATH (Chloride channel protein CLC-c OS=Arabidopsis thaliana GN=CLC-C PE=1 SV=1)

HSP 1 Score: 122.479 bits (306), Expect = 5.062e-48
Identity = 60/107 (56.07%), Postives = 78/107 (72.90%), Query Frame = 1
Query:  160 DPESNSLQQPLLKRSRTLSSSPLALVGAKVSHIESLDYEINENDLFKHDWRSRSKVQVLQYIFLKWSLACLVGLLTGLIATLINLAVENIAGYKLLAVVSFIEKDSW 480
            D  S   +QPLL R+R  ++S +A+VGA    IESLDYEI END FK DWRSR K+++LQY FLKW+LA L+GL TGL+  L NL VENIAG+KLL + + + K+ +
Sbjct:   31 DDGSVGFRQPLLARNRKNTTSQIAIVGANTCPIESLDYEIFENDFFKQDWRSRKKIEILQYTFLKWALAFLIGLATGLVGFLNNLGVENIAGFKLLLIGNLMLKEKY 137          

HSP 2 Score: 90.1225 bits (222), Expect = 5.062e-48
Identity = 42/70 (60.00%), Postives = 53/70 (75.71%), Query Frame = 2
Query:  476 AGPGIPEIKAYLNGVDTPNMFGATTLIVKIIGSIGAVAAGLDLGKEGPLVHIGSCIASLLGXGGPDNHRI 685
            AG GIPE+KAYLNG+D  ++   +TL VKI GSI  VAAG  +GKEGP+VH G+CIA+LLG GG   +R+
Sbjct:  167 AGSGIPEVKAYLNGIDAYSILAPSTLFVKIFGSIFGVAAGFVVGKEGPMVHTGACIANLLGQGGSKKYRL 236          
BLAST of FC868832 vs. ExPASy Swiss-Prot
Match: CLCG_ARATH (Putative chloride channel-like protein CLC-g OS=Arabidopsis thaliana GN=At5g33280 PE=2 SV=1)

HSP 1 Score: 100.138 bits (248), Expect = 5.820e-43
Identity = 51/94 (54.26%), Postives = 65/94 (69.15%), Query Frame = 1
Query:  172 NSLQQPLLK--RSRTLSSSPLALVGAKVSHIESLDYEINENDLFKHDWRSRSKVQVLQYIFLKWSLACLVGLLTGLIATLINLAVENIAGYKLL 447
            +S+  PLL   R  T S+S +A+VGA V  IESLDYEI END FK DWR RSKV++ QY+F+KW L   +G++  LI    NLAVEN+AG K +
Sbjct:    8 DSVAVPLLPSLRRATNSTSQVAIVGANVCPIESLDYEIAENDFFKQDWRGRSKVEIFQYVFMKWLLCFCIGIIVSLIGFANNLAVENLAGVKFV 101          

HSP 2 Score: 95.5153 bits (236), Expect = 5.820e-43
Identity = 43/70 (61.43%), Postives = 55/70 (78.57%), Query Frame = 2
Query:  476 AGPGIPEIKAYLNGVDTPNMFGATTLIVKIIGSIGAVAAGLDLGKEGPLVHIGSCIASLLGXGGPDNHRI 685
            AG GIPE+KAYLNGVD P +F   TLI+KIIG+I AV+A L +GK GP+VH G+C+AS+LG GG   +R+
Sbjct:  142 AGSGIPEVKAYLNGVDAPEIFSLRTLIIKIIGNISAVSASLLIGKAGPMVHTGACVASILGQGGSKRYRL 211          
BLAST of FC868832 vs. ExPASy Swiss-Prot
Match: CLCD_ARATH (Chloride channel protein CLC-d OS=Arabidopsis thaliana GN=CLC-D PE=1 SV=2)

HSP 1 Score: 93.5893 bits (231), Expect = 8.014e-32
Identity = 46/71 (64.79%), Postives = 51/71 (71.83%), Query Frame = 2
Query:  476 AGPGIPEIKAYLNGVDTPNMFGATTLIVKIIGSIGAVAAGLDLGKEGPLVHIGSCIASLLGXGGPDNHRIN 688
            AG GIPEIK YLNG+D P      TLI KI GSIG+V  GL LGKEGPLVH G+CIASLLG GG   + +N
Sbjct:  147 AGSGIPEIKGYLNGIDIPGTLLFRTLIGKIFGSIGSVGGGLALGKEGPLVHTGACIASLLGQGGSTKYHLN 217          

HSP 2 Score: 64.6994 bits (156), Expect = 8.014e-32
Identity = 30/72 (41.67%), Postives = 45/72 (62.50%), Query Frame = 1
Query:  256 IESLDYEINENDLFKHDWRSRSKVQVLQYIFLKWSLACLVGLLTGLIATLINLAVENIAGYKLLAVVSFIEK 471
            + SLDYE+ EN  ++ +   R K+ V  Y+ +KW  + L+G+ TGL A  INL+VEN AG+K     + I+K
Sbjct:   44 VNSLDYEVIENYAYREEQAHRGKLYVGYYVAVKWFFSLLIGIGTGLAAVFINLSVENFAGWKFALTFAIIQK 115          
BLAST of FC868832 vs. ExPASy Swiss-Prot
Match: CLCN7_RAT (H(+)/Cl(-) exchange transporter 7 OS=Rattus norvegicus GN=Clcn7 PE=2 SV=1)

HSP 1 Score: 67.0106 bits (162), Expect = 4.609e-21
Identity = 31/63 (49.21%), Postives = 44/63 (69.84%), Query Frame = 2
Query:  476 AGPGIPEIKAYLNGVDTPNMFGATTLIVKIIGSIGAVAAGLDLGKEGPLVHIGSCIASLLGXG 664
            AG GIP+IK +LNGV  P++    TL++K+ G I +V  GL +GKEGP++H GS IA+ +  G
Sbjct:  200 AGSGIPQIKCFLNGVKIPHVVRLKTLVIKVSGVILSVVGGLAVGKEGPMIHSGSVIAAGISQG 262          

HSP 2 Score: 55.0694 bits (131), Expect = 4.609e-21
Identity = 27/71 (38.03%), Postives = 41/71 (57.75%), Query Frame = 1
Query:  259 ESLDYEINENDLFKHDWRSRSKVQVLQYIFLKWSLACLVGLLTGLIATLINLAVENIAGYKLLAVVSFIEK 471
            ESLDY+ +EN LF  + R  +          +W +  L+G+LTGL+A  I++ VEN+AG K   +   I+K
Sbjct:   93 ESLDYDNSENQLFLEEERRINHTAFRTVEIKRWVICALIGILTGLVACFIDIVVENLAGLKYRVIKDNIDK 163          
BLAST of FC868832 vs. ExPASy Swiss-Prot
Match: CLCN7_MOUSE (H(+)/Cl(-) exchange transporter 7 OS=Mus musculus GN=Clcn7 PE=1 SV=1)

HSP 1 Score: 67.0106 bits (162), Expect = 4.609e-21
Identity = 31/63 (49.21%), Postives = 44/63 (69.84%), Query Frame = 2
Query:  476 AGPGIPEIKAYLNGVDTPNMFGATTLIVKIIGSIGAVAAGLDLGKEGPLVHIGSCIASLLGXG 664
            AG GIP+IK +LNGV  P++    TL++K+ G I +V  GL +GKEGP++H GS IA+ +  G
Sbjct:  200 AGSGIPQIKCFLNGVKIPHVVRLKTLVIKVSGVILSVVGGLAVGKEGPMIHSGSVIAAGISQG 262          

HSP 2 Score: 55.0694 bits (131), Expect = 4.609e-21
Identity = 27/71 (38.03%), Postives = 41/71 (57.75%), Query Frame = 1
Query:  259 ESLDYEINENDLFKHDWRSRSKVQVLQYIFLKWSLACLVGLLTGLIATLINLAVENIAGYKLLAVVSFIEK 471
            ESLDY+ +EN LF  + R  +          +W +  L+G+LTGL+A  I++ VEN+AG K   +   I+K
Sbjct:   93 ESLDYDNSENQLFLEEERRINHTAFRTVEIKRWVICALIGILTGLVACFIDIVVENLAGLKYRVIKDNIDK 163          
BLAST of FC868832 vs. ExPASy Swiss-Prot
Match: CLCN7_HUMAN (H(+)/Cl(-) exchange transporter 7 OS=Homo sapiens GN=CLCN7 PE=1 SV=2)

HSP 1 Score: 67.0106 bits (162), Expect = 4.609e-21
Identity = 31/63 (49.21%), Postives = 44/63 (69.84%), Query Frame = 2
Query:  476 AGPGIPEIKAYLNGVDTPNMFGATTLIVKIIGSIGAVAAGLDLGKEGPLVHIGSCIASLLGXG 664
            AG GIP+IK +LNGV  P++    TL++K+ G I +V  GL +GKEGP++H GS IA+ +  G
Sbjct:  202 AGSGIPQIKCFLNGVKIPHVVRLKTLVIKVSGVILSVVGGLAVGKEGPMIHSGSVIAAGISQG 264          

HSP 2 Score: 55.0694 bits (131), Expect = 4.609e-21
Identity = 27/71 (38.03%), Postives = 41/71 (57.75%), Query Frame = 1
Query:  259 ESLDYEINENDLFKHDWRSRSKVQVLQYIFLKWSLACLVGLLTGLIATLINLAVENIAGYKLLAVVSFIEK 471
            ESLDY+ +EN LF  + R  +          +W +  L+G+LTGL+A  I++ VEN+AG K   +   I+K
Sbjct:   95 ESLDYDNSENQLFLEEERRINHTAFRTVEIKRWVICALIGILTGLVACFIDIVVENLAGLKYRVIKGNIDK 165          
BLAST of FC868832 vs. ExPASy Swiss-Prot
Match: CLCN7_BOVIN (H(+)/Cl(-) exchange transporter 7 OS=Bos taurus GN=CLCN7 PE=2 SV=1)

HSP 1 Score: 67.0106 bits (162), Expect = 6.384e-20
Identity = 31/63 (49.21%), Postives = 44/63 (69.84%), Query Frame = 2
Query:  476 AGPGIPEIKAYLNGVDTPNMFGATTLIVKIIGSIGAVAAGLDLGKEGPLVHIGSCIASLLGXG 664
            AG GIP+IK +LNGV  P++    TL++K+ G I +V  GL +GKEGP++H GS IA+ +  G
Sbjct:  206 AGSGIPQIKCFLNGVKIPHVVRLKTLVIKVSGVILSVVGGLAVGKEGPMIHSGSVIAAGISQG 268          

HSP 2 Score: 51.2174 bits (121), Expect = 6.384e-20
Identity = 26/71 (36.62%), Postives = 40/71 (56.34%), Query Frame = 1
Query:  259 ESLDYEINENDLFKHDWRSRSKVQVLQYIFLKWSLACLVGLLTGLIATLINLAVENIAGYKLLAVVSFIEK 471
            ESLDY+ +EN LF  + R  +          +W +  +VG+LTGL+A  I++ VE +AG K   V   I++
Sbjct:   99 ESLDYDNSENQLFLEEERRINHTAFRTVEIKRWVICAMVGILTGLVACFIDIVVEKLAGLKYRLVKDNIDR 169          
BLAST of FC868832 vs. ExPASy Swiss-Prot
Match: CLCA_DICDI (Chloride channel protein A OS=Dictyostelium discoideum GN=clcA PE=2 SV=1)

HSP 1 Score: 64.3142 bits (155), Expect = 2.674e-17
Identity = 28/61 (45.90%), Postives = 40/61 (65.57%), Query Frame = 2
Query:  476 AGPGIPEIKAYLNGVDTPNMFGATTLIVKIIGSIGAVAAGLDLGKEGPLVHIGSCIASLLG 658
            +G GIPE+K YLNG+  P      TL+ K++  I A ++GL LG EGP++HIGS +   +G
Sbjct:  199 SGSGIPEVKGYLNGIRIPQSMNVKTLVGKLVSLILAYSSGLILGPEGPMIHIGSMLGGAIG 259          

HSP 2 Score: 45.0542 bits (105), Expect = 2.674e-17
Identity = 22/77 (28.57%), Postives = 43/77 (55.84%), Query Frame = 1
Query:  244 KVSHIESLDYEINENDLFKHDWRSRSKVQVLQYIFLKWSLACLVGLLTGLIATLINLAVENIAGYKLLAVVSFIEKD 474
            K++  ESLD+ I +N +++   R  SK+  +   F KW +  ++G+L G+ A L+  +VE +  +K      ++E +
Sbjct:   91 KMTKFESLDFPIIDNQIYREYIRRTSKLNHMLKTFGKWIICFMIGVLVGITAYLVKQSVEFVNEFKFDQSGKYLEDE 167          
The following BLAST results are available for this feature:
BLAST of FC868832 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 16
Match NameE-valueIdentityDescription
CLCA_ARATH5.064e-8275.00Chloride channel protein CLC-a OS=Arabidopsis thal... [more]
CLCB_ARATH1.029e-7980.91Chloride channel protein CLC-b OS=Arabidopsis thal... [more]
CLCC_ARATH5.062e-4856.07Chloride channel protein CLC-c OS=Arabidopsis thal... [more]
CLCG_ARATH5.820e-4354.26Putative chloride channel-like protein CLC-g OS=Ar... [more]
CLCD_ARATH8.014e-3264.79Chloride channel protein CLC-d OS=Arabidopsis thal... [more]
CLCN7_RAT4.609e-2149.21H(+)/Cl(-) exchange transporter 7 OS=Rattus norveg... [more]
CLCN7_MOUSE4.609e-2149.21H(+)/Cl(-) exchange transporter 7 OS=Mus musculus ... [more]
CLCN7_HUMAN4.609e-2149.21H(+)/Cl(-) exchange transporter 7 OS=Homo sapiens ... [more]
CLCN7_BOVIN6.384e-2049.21H(+)/Cl(-) exchange transporter 7 OS=Bos taurus GN... [more]
CLCA_DICDI2.674e-1745.90Chloride channel protein A OS=Dictyostelium discoi... [more]

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Properties
Property NameValue
Genbank descriptionC31005D03EF AbioticL1 Citrus clementina cDNA clone C31005D03, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>FC868832 ID=FC868832; Name=FC868832; organism=Citrus clementina; type=EST; length=690bp
GAGACCATTCCAATCCAGCGCCTACCACAGGATCATAATTCACCAACCCC
AAAAGCCTCTGAGATTTGAAACTTGTGTTGGTTTGCTTCAATGGAGGAAA
ATTCCAATCCAGTGGCAAGAGCAACACAAGCCCACATGGAAGCTGATGAA
GAAGAAAGAGACCCTGAAAGCAATTCATTGCAACAGCCACTTCTGAAGAG
AAGCAGAACATTATCTTCTAGTCCATTAGCCCTTGTTGGAGCCAAAGTTT
CCCATATTGAGAGCTTAGATTATGAGATCAATGAAAATGATCTATTCAAG
CATGATTGGAGAAGCAGATCCAAAGTACAAGTGTTGCAATATATTTTCTT
GAAATGGTCACTGGCCTGTCTTGTTGGTCTCTTAACTGGCTTGATTGCCA
CCCTCATCAATCTTGCAGTTGAGAACATTGCTGGATACAAGCTTCTTGCT
GTTGTAAGCTTCATAGAGAAGGACAGCTGGTCCTGGAATACCAGAAATCA
AAGCTTATCTCAATGGTGTTGATACTCCCAACATGTTTGGAGCCACAACA
TTGATTGTCAAGATTATTGGAAGCATTGGAGCTGTGGCCGCAGGGCTAGA
TTTGGGAAAAGAAGGGCCTCTGGTGCATATCGGCAGTTGCATTGCTTCAT
TACTTGGGCNAGGAGGGCCTGATAATCACCGTATAAATGG
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