FC868836

Overview
NameFC868836
Unique NameFC868836
TypeEST
OrganismCitrus clementina (Clementine)
Sequence length710
Libraries
Library NameType
AbioticL1cdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of FC868836 vs. ExPASy Swiss-Prot
Match: CRTI_SOYBN (Phytoene dehydrogenase, chloroplastic/chromoplastic OS=Glycine max GN=PDS1 PE=2 SV=1)

HSP 1 Score: 379.022 bits (972), Expect = 1.344e-104
Identity = 186/227 (81.94%), Postives = 205/227 (90.31%), Query Frame = 2
Query:    2 EKVKFAIGLLPAIIGGQAYVEAQDGLTVQEWMRKQVQPSDLVRELGVPDRVTTEVFIAMSKALNFINPDELSMQCILIALNRFLQEKHGSKMAFLDGNPPERLCLPIVEHIQSLGGEVRLNSRVQKIELNDDGTVKNFLLTNGNVIDGDAYVFATPVDILKLQLPENWKEMAYFKRLEKLVGVPVINIHIWFDRKLKNTYDHLLFSRSPLLSVYADMSLNL*EYYTP 682
            EKVKFAIGLLPA++GGQ YVEAQDGL+VQEWM+KQ          GVP+RV  EVFIAMSKALNFINPDELSMQCILIALNRFLQEKHGSKMAFLDGNPPERLC+PIV++IQSLGGEV LNSR+QKIELNDDGTVK+FLL NG V++GDAYVFATPVDILKL LP+NWK + YF+RL+KLVGVPVIN+HIWFDRKLKNTYDHLLFSRSPLLSVYADMS+   EYY+P
Sbjct:  223 EKVKFAIGLLPAMLGGQPYVEAQDGLSVQEWMKKQ----------GVPERVADEVFIAMSKALNFINPDELSMQCILIALNRFLQEKHGSKMAFLDGNPPERLCMPIVDYIQSLGGEVHLNSRIQKIELNDDGTVKSFLLNNGKVMEGDAYVFATPVDILKLLLPDNWKGIPYFQRLDKLVGVPVINVHIWFDRKLKNTYDHLLFSRSPLLSVYADMSVTCKEYYSP 439          
BLAST of FC868836 vs. ExPASy Swiss-Prot
Match: CRTI_ARATH (Phytoene dehydrogenase, chloroplastic/chromoplastic OS=Arabidopsis thaliana GN=PDS PE=2 SV=1)

HSP 1 Score: 376.326 bits (965), Expect = 8.713e-104
Identity = 183/227 (80.62%), Postives = 205/227 (90.31%), Query Frame = 2
Query:    2 EKVKFAIGLLPAIIGGQAYVEAQDGLTVQEWMRKQVQPSDLVRELGVPDRVTTEVFIAMSKALNFINPDELSMQCILIALNRFLQEKHGSKMAFLDGNPPERLCLPIVEHIQSLGGEVRLNSRVQKIELNDDGTVKNFLLTNGNVIDGDAYVFATPVDILKLQLPENWKEMAYFKRLEKLVGVPVINIHIWFDRKLKNTYDHLLFSRSPLLSVYADMSLNL*EYYTP 682
            EK+KFAIGLLPA++GGQAYVEAQDGL+V+EWM KQ          GVP+RVT EVFIAMSKALNFINPDELSMQCILIALNRFLQEKHGSKMAFLDGNPPERLC+P+V+HI+SLGGEV+LNSR++KIELNDDGTVK+FLLTNG+ ++GDAYVFA PVDILKL LP+ WKE+ YFK+L+KLVGVPVIN+HIWFDRKLKNTYDHLLFSRS LLSVYADMSL   EYY P
Sbjct:  217 EKIKFAIGLLPAMVGGQAYVEAQDGLSVKEWMEKQ----------GVPERVTDEVFIAMSKALNFINPDELSMQCILIALNRFLQEKHGSKMAFLDGNPPERLCMPVVDHIRSLGGEVQLNSRIKKIELNDDGTVKSFLLTNGSTVEGDAYVFAAPVDILKLLLPDPWKEIPYFKKLDKLVGVPVINVHIWFDRKLKNTYDHLLFSRSNLLSVYADMSLTCKEYYDP 433          
BLAST of FC868836 vs. ExPASy Swiss-Prot
Match: CRTI_ORYSJ (Phytoene dehydrogenase, chloroplastic/chromoplastic OS=Oryza sativa subsp. japonica GN=PDS PE=2 SV=2)

HSP 1 Score: 373.244 bits (957), Expect = 7.376e-103
Identity = 183/227 (80.62%), Postives = 201/227 (88.55%), Query Frame = 2
Query:    2 EKVKFAIGLLPAIIGGQAYVEAQDGLTVQEWMRKQVQPSDLVRELGVPDRVTTEVFIAMSKALNFINPDELSMQCILIALNRFLQEKHGSKMAFLDGNPPERLCLPIVEHIQSLGGEVRLNSRVQKIELNDDGTVKNFLLTNGNVIDGDAYVFATPVDILKLQLPENWKEMAYFKRLEKLVGVPVINIHIWFDRKLKNTYDHLLFSRSPLLSVYADMSLNL*EYYTP 682
            EKVKFA+GLLPA++GGQAYVEAQDG TV EWM+KQ          GVPDRV  EVFIAMSKALNFINPDELSMQCILIALNRFLQEKHGSKMAFLDGNPPERLC+PIV+H++SLGGEVRLNSR+QKIELN DGTVK+F LT+G  I GDAYVFATPVDILKL +P+ WKE++YFK+LEKLVGVPVIN+HIWFDRKLKNTYDHLLFSRS LLSVYADMS+   EYY P
Sbjct:  229 EKVKFALGLLPAMVGGQAYVEAQDGFTVSEWMKKQ----------GVPDRVNDEVFIAMSKALNFINPDELSMQCILIALNRFLQEKHGSKMAFLDGNPPERLCMPIVDHVRSLGGEVRLNSRIQKIELNPDGTVKHFALTDGTQITGDAYVFATPVDILKLLVPQEWKEISYFKKLEKLVGVPVINVHIWFDRKLKNTYDHLLFSRSSLLSVYADMSVTCKEYYDP 445          
BLAST of FC868836 vs. ExPASy Swiss-Prot
Match: CRTI_ORYSI (Phytoene dehydrogenase, chloroplastic/chromoplastic OS=Oryza sativa subsp. indica GN=PDS1 PE=2 SV=2)

HSP 1 Score: 373.244 bits (957), Expect = 7.376e-103
Identity = 183/227 (80.62%), Postives = 201/227 (88.55%), Query Frame = 2
Query:    2 EKVKFAIGLLPAIIGGQAYVEAQDGLTVQEWMRKQVQPSDLVRELGVPDRVTTEVFIAMSKALNFINPDELSMQCILIALNRFLQEKHGSKMAFLDGNPPERLCLPIVEHIQSLGGEVRLNSRVQKIELNDDGTVKNFLLTNGNVIDGDAYVFATPVDILKLQLPENWKEMAYFKRLEKLVGVPVINIHIWFDRKLKNTYDHLLFSRSPLLSVYADMSLNL*EYYTP 682
            EKVKFA+GLLPA++GGQAYVEAQDG TV EWM+KQ          GVPDRV  EVFIAMSKALNFINPDELSMQCILIALNRFLQEKHGSKMAFLDGNPPERLC+PIV+H++SLGGEVRLNSR+QKIELN DGTVK+F LT+G  I GDAYVFATPVDILKL +P+ WKE++YFK+LEKLVGVPVIN+HIWFDRKLKNTYDHLLFSRS LLSVYADMS+   EYY P
Sbjct:  229 EKVKFALGLLPAMVGGQAYVEAQDGFTVSEWMKKQ----------GVPDRVNDEVFIAMSKALNFINPDELSMQCILIALNRFLQEKHGSKMAFLDGNPPERLCMPIVDHVRSLGGEVRLNSRIQKIELNPDGTVKHFALTDGTQITGDAYVFATPVDILKLLVPQEWKEISYFKKLEKLVGVPVINVHIWFDRKLKNTYDHLLFSRSSLLSVYADMSVTCKEYYDP 445          
BLAST of FC868836 vs. ExPASy Swiss-Prot
Match: CRTI_SOLLC (Phytoene dehydrogenase, chloroplastic/chromoplastic OS=Solanum lycopersicum GN=PDS PE=2 SV=1)

HSP 1 Score: 368.237 bits (944), Expect = 2.373e-101
Identity = 178/227 (78.41%), Postives = 205/227 (90.31%), Query Frame = 2
Query:    2 EKVKFAIGLLPAIIGGQAYVEAQDGLTVQEWMRKQVQPSDLVRELGVPDRVTTEVFIAMSKALNFINPDELSMQCILIALNRFLQEKHGSKMAFLDGNPPERLCLPIVEHIQSLGGEVRLNSRVQKIELNDDGTVKNFLLTNGNVIDGDAYVFATPVDILKLQLPENWKEMAYFKRLEKLVGVPVINIHIWFDRKLKNTYDHLLFSRSPLLSVYADMSLNL*EYYTP 682
            EKVKFAIGLLPA++GGQ+YVEAQDG++V++WMRKQ          GVPDRVT EVFIAMSKALNFINPDELSMQCILIALNRFLQEKHGSKMAFLDGNPPERLC+PIVEHI+S GG+VRLNSR++KIELN+DG+VK+F+L++G+ I+GDA+VFA PVDI KL LPE+WKE+ YF++LEKLVGVPVIN+HIWFDRKLKNTYDHLLFSRS LLSVYADMS+   EYY P
Sbjct:  236 EKVKFAIGLLPAMLGGQSYVEAQDGISVKDWMRKQ----------GVPDRVTDEVFIAMSKALNFINPDELSMQCILIALNRFLQEKHGSKMAFLDGNPPERLCMPIVEHIESKGGQVRLNSRIKKIELNEDGSVKSFILSDGSAIEGDAFVFAAPVDIFKLLLPEDWKEIPYFQKLEKLVGVPVINVHIWFDRKLKNTYDHLLFSRSSLLSVYADMSVTCKEYYNP 452          
BLAST of FC868836 vs. ExPASy Swiss-Prot
Match: CRTI_NARPS (Phytoene dehydrogenase, chloroplastic/chromoplastic OS=Narcissus pseudonarcissus GN=PDS1 PE=1 SV=1)

HSP 1 Score: 368.237 bits (944), Expect = 2.373e-101
Identity = 180/227 (79.30%), Postives = 200/227 (88.11%), Query Frame = 2
Query:    2 EKVKFAIGLLPAIIGGQAYVEAQDGLTVQEWMRKQVQPSDLVRELGVPDRVTTEVFIAMSKALNFINPDELSMQCILIALNRFLQEKHGSKMAFLDGNPPERLCLPIVEHIQSLGGEVRLNSRVQKIELNDDGTVKNFLLTNGNVIDGDAYVFATPVDILKLQLPENWKEMAYFKRLEKLVGVPVINIHIWFDRKLKNTYDHLLFSRSPLLSVYADMSLNL*EYYTP 682
            EKV+FAIGLLPA++GGQAYVEAQDGLTV EWMR+Q          GVPDRV  EVFIAMSKALNFINPDELSMQCILIALNRFLQEKHGSKMAFLDGNPPERLC+PIV+HIQSLGG  +LNSR+QKIELN DGTVK+F+L NGN+I GDAYV A PVDILKL LP+ W+E+ YF++L+KLVGVPVIN+HIWFDRKLKNTYDHLLF+RSPLLSVYADMS+   EYY P
Sbjct:  222 EKVRFAIGLLPAMVGGQAYVEAQDGLTVTEWMRRQ----------GVPDRVNDEVFIAMSKALNFINPDELSMQCILIALNRFLQEKHGSKMAFLDGNPPERLCMPIVDHIQSLGGRAQLNSRLQKIELNPDGTVKHFVLGNGNIITGDAYVVAAPVDILKLLLPQEWREIPYFQKLDKLVGVPVINVHIWFDRKLKNTYDHLLFTRSPLLSVYADMSVTCKEYYDP 438          
BLAST of FC868836 vs. ExPASy Swiss-Prot
Match: CRTI_CAPAN (Phytoene dehydrogenase, chloroplastic/chromoplastic OS=Capsicum annuum GN=PDS PE=2 SV=1)

HSP 1 Score: 364.77 bits (935), Expect = 2.623e-100
Identity = 178/227 (78.41%), Postives = 204/227 (89.87%), Query Frame = 2
Query:    2 EKVKFAIGLLPAIIGGQAYVEAQDGLTVQEWMRKQVQPSDLVRELGVPDRVTTEVFIAMSKALNFINPDELSMQCILIALNRFLQEKHGSKMAFLDGNPPERLCLPIVEHIQSLGGEVRLNSRVQKIELNDDGTVKNFLLTNGNVIDGDAYVFATPVDILKLQLPENWKEMAYFKRLEKLVGVPVINIHIWFDRKLKNTYDHLLFSRSPLLSVYADMSLNL*EYYTP 682
            EKVKFAIGLLPA++GGQ+YVEAQDG++V++WMRKQ          GVPDRVT EVFIAMSKALNFINPDELSMQCILIALNRFLQEKHGSKMAFLDGNPPERLC+PIVEHI+S GG+VRLNSR++KIELN+DG+VK F+L +G+ I+GDA+VFATPVDI KL LPE+WKE+ YF++LEKLVGVPVIN+HIWFDRKLKNT D+LLFSRSPLLSVYADMS+   EYY P
Sbjct:  235 EKVKFAIGLLPAMLGGQSYVEAQDGISVKDWMRKQ----------GVPDRVTDEVFIAMSKALNFINPDELSMQCILIALNRFLQEKHGSKMAFLDGNPPERLCMPIVEHIESKGGQVRLNSRIKKIELNEDGSVKCFILNDGSTIEGDAFVFATPVDIFKLLLPEDWKEIPYFQKLEKLVGVPVINVHIWFDRKLKNTSDNLLFSRSPLLSVYADMSVTCKEYYDP 451          
BLAST of FC868836 vs. ExPASy Swiss-Prot
Match: CRTI_MAIZE (Phytoene dehydrogenase, chloroplastic/chromoplastic OS=Zea mays GN=PDS1 PE=2 SV=1)

HSP 1 Score: 359.762 bits (922), Expect = 8.439e-99
Identity = 178/227 (78.41%), Postives = 195/227 (85.90%), Query Frame = 2
Query:    2 EKVKFAIGLLPAIIGGQAYVEAQDGLTVQEWMRKQVQPSDLVRELGVPDRVTTEVFIAMSKALNFINPDELSMQCILIALNRFLQEKHGSKMAFLDGNPPERLCLPIVEHIQSLGGEVRLNSRVQKIELNDDGTVKNFLLTNGNVIDGDAYVFATPVDILKLQLPENWKEMAYFKRLEKLVGVPVINIHIWFDRKLKNTYDHLLFSRSPLLSVYADMSLNL*EYYTP 682
            EKVKFAIGLLPA++GGQ YVEAQDGLTV EWM+KQ          GVPDRV  EVFIAMSKALNFINPDELSMQCILIALNRFLQEKHGSKMAFLDGNPPERLC+PIV+HI+S GGEVRLNSR++KIELN DGTVK+F L++G  I GDAYV ATPVDI KL +P+ W E+ YFK+LEKLVGVPVIN+HIWFDRKL NTYDHLLFSRS LLSVYADMS+   EYY P
Sbjct:  221 EKVKFAIGLLPAMVGGQPYVEAQDGLTVSEWMKKQ----------GVPDRVNDEVFIAMSKALNFINPDELSMQCILIALNRFLQEKHGSKMAFLDGNPPERLCMPIVDHIRSRGGEVRLNSRIKKIELNPDGTVKHFALSDGTQITGDAYVCATPVDIFKLLVPQEWSEITYFKKLEKLVGVPVINVHIWFDRKLNNTYDHLLFSRSSLLSVYADMSVTCKEYYDP 437          
BLAST of FC868836 vs. ExPASy Swiss-Prot
Match: CRTI_SYNE7 (Phytoene dehydrogenase OS=Synechococcus elongatus (strain PCC 7942) GN=pds PE=3 SV=1)

HSP 1 Score: 259.61 bits (662), Expect = 1.189e-68
Identity = 137/232 (59.05%), Postives = 167/232 (71.98%), Query Frame = 2
Query:    2 EKVKFAIGLLPAIIGGQAYVEAQDGLTVQEWMRKQVQPSDLVRELGVPDRVTTEVFIAMSKALNFINPDELSMQCILIALNRFLQEKHGSKMAFLDGNPPERLCLPIVEHIQSLGGEVRLNSRVQKIELNDDGTVKNFLLT-----NGNVIDGDAYVFATPVDILKLQLPENWKEMAYFKRLEKLVGVPVINIHIWFDRKLKNTYDHLLFSRSPLLSVYADMSLNL*EYYTP 682
            EK+KF +GLLPA+I GQ+YVE  D  +  EW+RKQ           +P+RV  EVFIAM+KALNFI+PDE+S   +L ALNRFLQEK GS MAFLDG PPERLC PIVEH+Q+ GG+V LN+ +++  LNDD +V+ F +         +I+ DAYV A PVD LKL LP+ WK M YF++L+ L GVPVINIH+WFDRKL +  DHLLFSRSPLLSVYADMS    EY  P
Sbjct:  124 EKIKFGLGLLPAMIRGQSYVEEMDQYSWTEWLRKQ----------NIPERVNDEVFIAMAKALNFIDPDEISATVVLTALNRFLQEKKGSMMAFLDGAPPERLCQPIVEHVQARGGDVLLNAPLKEFVLNDDSSVQAFRIAGIKGQEEQLIEADAYVSALPVDPLKLLLPDAWKAMPYFQQLDGLQGVPVINIHLWFDRKLTD-IDHLLFSRSPLLSVYADMSNTCREYEDP 344          
BLAST of FC868836 vs. ExPASy Swiss-Prot
Match: CRTI_SYNY3 (Phytoene dehydrogenase OS=Synechocystis sp. (strain PCC 6803) GN=pds PE=3 SV=2)

HSP 1 Score: 251.521 bits (641), Expect = 3.237e-66
Identity = 132/232 (56.90%), Postives = 162/232 (69.83%), Query Frame = 2
Query:    2 EKVKFAIGLLPAIIGGQAYVEAQDGLTVQEWMRKQVQPSDLVRELGVPDRVTTEVFIAMSKALNFINPDELSMQCILIALNRFLQEKHGSKMAFLDGNPPERLCLPIVEHIQSLGGEVRLNSRVQKIELNDDGTVKNFLLTN-----GNVIDGDAYVFATPVDILKLQLPENWKEMAYFKRLEKLVGVPVINIHIWFDRKLKNTYDHLLFSRSPLLSVYADMSLNL*EYYTP 682
            EK++F +GLLPAI+ GQ+YVE  D  T  EWM KQ           +P R+  EVFIAMSKALNFI+PDE+S   +L ALNRFLQEK+GSKMAFLDG PPERLC P+V++I   GGEV +N  +++I LN+DG+VK +L+         VI  D YV A PVD LK  +P  W+E   FK+++ L GVPVIN+H+WFDRKL +  DHLLFSRSPLLSVYADMS    EY  P
Sbjct:  124 EKIRFGLGLLPAIVQGQSYVEEMDKYTWSEWMAKQ----------NIPPRIEKEVFIAMSKALNFIDPDEISATILLTALNRFLQEKNGSKMAFLDGAPPERLCQPLVDYITERGGEVHINKPLKEILLNEDGSVKGYLIRGLDGAPDEVITADLYVSAMPVDPLKTMVPAPWREYPEFKQIQGLEGVPVINLHLWFDRKLTD-IDHLLFSRSPLLSVYADMSNTCREYSDP 344          
The following BLAST results are available for this feature:
BLAST of FC868836 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 18
Match NameE-valueIdentityDescription
CRTI_SOYBN1.344e-10481.94Phytoene dehydrogenase, chloroplastic/chromoplasti... [more]
CRTI_ARATH8.713e-10480.62Phytoene dehydrogenase, chloroplastic/chromoplasti... [more]
CRTI_ORYSJ7.376e-10380.62Phytoene dehydrogenase, chloroplastic/chromoplasti... [more]
CRTI_ORYSI7.376e-10380.62Phytoene dehydrogenase, chloroplastic/chromoplasti... [more]
CRTI_SOLLC2.373e-10178.41Phytoene dehydrogenase, chloroplastic/chromoplasti... [more]
CRTI_NARPS2.373e-10179.30Phytoene dehydrogenase, chloroplastic/chromoplasti... [more]
CRTI_CAPAN2.623e-10078.41Phytoene dehydrogenase, chloroplastic/chromoplasti... [more]
CRTI_MAIZE8.439e-9978.41Phytoene dehydrogenase, chloroplastic/chromoplasti... [more]
CRTI_SYNE71.189e-6859.05Phytoene dehydrogenase OS=Synechococcus elongatus ... [more]
CRTI_SYNY33.237e-6656.90Phytoene dehydrogenase OS=Synechocystis sp. (strai... [more]

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Properties
Property NameValue
Genbank descriptionC31005D07EF AbioticL1 Citrus clementina cDNA clone C31005D07, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>FC868836 ID=FC868836; Name=FC868836; organism=Citrus clementina; type=EST; length=710bp
GGAGAAAGTGAAGTTTGCTATTGGACTGCTTCCAGCAATAATTGGTGGAC
AGGCATATGTTGAAGCTCAAGATGGTTTAACTGTTCAGGAGTGGATGAGA
AAGCAGGTGCAACCTTCAGATTTGGTGAGAGAACTGGGTGTACCTGATCG
AGTGACGACGGAGGTGTTTATTGCCATGTCAAAGGCACTAAACTTCATAA
ACCCTGATGAACTGTCAATGCAATGTATATTGATTGCCTTAAACCGATTT
CTTCAGGAGAAGCATGGTTCAAAGATGGCATTCTTAGATGGCAACCCCCC
AGAGAGACTTTGCTTGCCTATTGTTGAACACATTCAGTCACTGGGTGGTG
AAGTCCGGCTTAATTCCCGAGTTCAGAAAATTGAGCTCAATGATGATGGA
ACTGTGAAGAATTTTTTACTAACTAATGGCAATGTGATTGACGGAGATGC
TTATGTATTTGCCACACCTGTTGATATCCTCAAGCTTCAGTTACCTGAAA
ACTGGAAAGAGATGGCATACTTCAAGAGATTAGAGAAATTGGTGGGAGTT
CCAGTCATCAACATCCACATATGGTTTGACAGGAAATTGAAAAACACTTA
TGATCACCTACTCTTTAGCAGAAGTCCCCTTCTAAGTGTGTATGCCGACA
TGTCTTTAAACTTGTAGGAGTATTACACCCCAATCAATCATGCTGGAGTT
AGTTTTTGCC
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