FC868868

Overview
NameFC868868
Unique NameFC868868
TypeEST
OrganismCitrus clementina (Clementine)
Sequence length719
Libraries
Library NameType
AbioticL1cdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of FC868868 vs. ExPASy Swiss-Prot
Match: PDK1_HUMAN ([Pyruvate dehydrogenase [lipoamide]] kinase isozyme 1, mitochondrial OS=Homo sapiens GN=PDK1 PE=1 SV=1)

HSP 1 Score: 90.8929 bits (224), Expect = 7.400e-18
Identity = 55/144 (38.19%), Postives = 81/144 (56.25%), Query Frame = 3
Query:  129 VSLRYMMEFGSKPTDKNLLISAQFLHKELPIRIARRAIELETLPYGLSEKPAVLKVRDWYLDSFRDLRSFPDIRSTSDER---DFTQMIKAIKVRHNNVVPMMALGLQQLKKEMDPKIVYEDLHEIHQFLDRFYMSRIGIRMLI 551
            +S++  ++FGS    +    S  FL +ELP+R+A    E+  LP  L   P+V  V+ WY+ S ++L  F D +S  D +   DFT  +  I+ RHN+V+P MA G+ + K+      V      +  FLDRFYMSRI IRML+
Sbjct:   57 LSMKQFLDFGSVNACEKT--SFMFLRQELPVRLANIMKEISLLPDNLLRTPSVQLVQSWYIQSLQELLDFKD-KSAEDAKAIYDFTDTVIRIRNRHNDVIPTMAQGVIEYKESFGVDPVTS--QNVQYFLDRFYMSRISIRMLL 195          
BLAST of FC868868 vs. ExPASy Swiss-Prot
Match: PDK1_RAT ([Pyruvate dehydrogenase [lipoamide]] kinase isozyme 1, mitochondrial OS=Rattus norvegicus GN=Pdk1 PE=1 SV=1)

HSP 1 Score: 90.1225 bits (222), Expect = 1.262e-17
Identity = 54/144 (37.50%), Postives = 81/144 (56.25%), Query Frame = 3
Query:  129 VSLRYMMEFGSKPTDKNLLISAQFLHKELPIRIARRAIELETLPYGLSEKPAVLKVRDWYLDSFRDLRSFPDIRSTSDER---DFTQMIKAIKVRHNNVVPMMALGLQQLKKEMDPKIVYEDLHEIHQFLDRFYMSRIGIRMLI 551
            +S++  ++FGS    +    S  FL +ELP+R+A    E+  LP  L   P+V  V+ WY+ S ++L  F D +S  D +   +FT  +  I+ RHN+V+P MA G+ + K+      V      +  FLDRFYMSRI IRML+
Sbjct:   57 LSMKQFLDFGSVNACEKT--SFMFLRQELPVRLANIMKEISLLPDNLLRTPSVQLVQSWYIQSLQELLDFKD-KSAEDAKTIYEFTDTVIRIRNRHNDVIPTMAQGVTEYKESFGVDPVTS--QNVQYFLDRFYMSRISIRMLL 195          
BLAST of FC868868 vs. ExPASy Swiss-Prot
Match: PDK1_MOUSE ([Pyruvate dehydrogenase [lipoamide]] kinase isozyme 1, mitochondrial OS=Mus musculus GN=Pdk1 PE=2 SV=1)

HSP 1 Score: 90.1225 bits (222), Expect = 1.262e-17
Identity = 54/144 (37.50%), Postives = 81/144 (56.25%), Query Frame = 3
Query:  129 VSLRYMMEFGSKPTDKNLLISAQFLHKELPIRIARRAIELETLPYGLSEKPAVLKVRDWYLDSFRDLRSFPDIRSTSDER---DFTQMIKAIKVRHNNVVPMMALGLQQLKKEMDPKIVYEDLHEIHQFLDRFYMSRIGIRMLI 551
            +S++  ++FGS    +    S  FL +ELP+R+A    E+  LP  L   P+V  V+ WY+ S ++L  F D +S  D +   +FT  +  I+ RHN+V+P MA G+ + K+      V      +  FLDRFYMSRI IRML+
Sbjct:   57 LSMKQFLDFGSVNACEKT--SFMFLRQELPVRLANIMKEISLLPDNLLRTPSVQLVQSWYIQSLQELLDFKD-KSAEDAKTIYEFTDTVIRIRNRHNDVIPTMAQGVTEYKESFGVDPVTS--QNVQYFLDRFYMSRISIRMLL 195          
BLAST of FC868868 vs. ExPASy Swiss-Prot
Match: BCKD_RAT ([3-methyl-2-oxobutanoate dehydrogenase [lipoamide]] kinase, mitochondrial OS=Rattus norvegicus GN=Bckdk PE=1 SV=2)

HSP 1 Score: 88.9669 bits (219), Expect = 2.812e-17
Identity = 51/166 (30.72%), Postives = 91/166 (54.82%), Query Frame = 3
Query:   51 AKKLSETFSKSLIEEVGRWGCMKQTGVSLRYMMEFGSKPTDKNLLISAQFLHKELPIRIARRAIELETLPYGLSEKPAVLKVRDWYLDSFRDLRSFPDIRSTSDERDFTQMIKAIKVRHNNVVPMMALGLQQLKKEMDPKIVYEDLHEIHQFLDRFYMSRIGIRML 548
            +K ++  +++S I+ V     ++ T   + Y    G      +LL S ++L +ELP+RIA R     +LP+ +   P +L V + Y+ +F+ L  FP I+  +DE  + Q+++ +   H +VV ++A GL++ +K +      ED   +  FLD+   SR+GIRML
Sbjct:   47 SKTVTSFYNQSAIDVVAEKPSVRLTPTMMLYS---GRSQDGSHLLKSGRYLQQELPVRIAHRIKGFRSLPFIIGCNPTILHVHELYIRAFQKLTDFPPIKDQADEAQYCQLVRQLLDDHKDVVTLLAEGLRESRKHI------EDEKLVRYFLDKTLTSRLGIRML 203          
BLAST of FC868868 vs. ExPASy Swiss-Prot
Match: BCKD_HUMAN ([3-methyl-2-oxobutanoate dehydrogenase [lipoamide]] kinase, mitochondrial OS=Homo sapiens GN=BCKDK PE=1 SV=2)

HSP 1 Score: 88.5817 bits (218), Expect = 3.673e-17
Identity = 51/166 (30.72%), Postives = 90/166 (54.22%), Query Frame = 3
Query:   51 AKKLSETFSKSLIEEVGRWGCMKQTGVSLRYMMEFGSKPTDKNLLISAQFLHKELPIRIARRAIELETLPYGLSEKPAVLKVRDWYLDSFRDLRSFPDIRSTSDERDFTQMIKAIKVRHNNVVPMMALGLQQLKKEMDPKIVYEDLHEIHQFLDRFYMSRIGIRML 548
            +K ++  +++S I+       ++ T   + Y    G      +LL SA++L +ELP+RIA R      LP+ +   P +L V + Y+ +F+ L  FP I+  +DE  + Q+++ +   H +VV ++A GL++ +K +      ED   +  FLD+   SR+GIRML
Sbjct:   47 SKTVTSFYNQSAIDAAAEKPSVRLTPTMMLYA---GRSQDGSHLLKSARYLQQELPVRIAHRIKGFRCLPFIIGCNPTILHVHELYIRAFQKLTDFPPIKDQADEAQYCQLVRQLLDDHKDVVTLLAEGLRESRKHI------EDEKLVRYFLDKTLTSRLGIRML 203          
BLAST of FC868868 vs. ExPASy Swiss-Prot
Match: PDK_DROME ([Pyruvate dehydrogenase [lipoamide]] kinase, mitochondrial OS=Drosophila melanogaster GN=Pdk PE=2 SV=2)

HSP 1 Score: 87.4261 bits (215), Expect = 8.182e-17
Identity = 53/142 (37.32%), Postives = 76/142 (53.52%), Query Frame = 3
Query:  129 VSLRYMMEFGSKPTDKNLLISAQFLHKELPIRIARRAIELETLPYGLSEKPAVLKVRDWYLDSFRDLRSFPDIRSTSDE-RDFTQMIKAIKVRHNNVVPMMALGLQQLKKEMDPKIVYEDLHEIHQFLDRFYMSRIGIRMLI 551
            +S++  M+FG    +K   I   FL KELP+R+A    E+  LP  L    +V +V  WY+ SF D+  +     T D  + F   +  I+ RHN+VV  MA G+ ++K+    ++       I  FLDR YMSRI IRMLI
Sbjct:   33 LSIKQFMDFGQNACEKKSYI---FLRKELPVRLANIMKEIALLPDNLLHTRSVSEVSSWYVKSFEDVLVYEKAEPTHDNLQKFVADLDLIRNRHNDVVQTMAQGVIEMKENEGGQVDAPTESSIQYFLDRLYMSRISIRMLI 171          
BLAST of FC868868 vs. ExPASy Swiss-Prot
Match: BCKD_BOVIN ([3-methyl-2-oxobutanoate dehydrogenase [lipoamide]] kinase, mitochondrial OS=Bos taurus GN=BCKDK PE=2 SV=1)

HSP 1 Score: 87.4261 bits (215), Expect = 8.182e-17
Identity = 51/166 (30.72%), Postives = 91/166 (54.82%), Query Frame = 3
Query:   51 AKKLSETFSKSLIEEVGRWGCMKQTGVSLRYMMEFGSKPTDKNLLISAQFLHKELPIRIARRAIELETLPYGLSEKPAVLKVRDWYLDSFRDLRSFPDIRSTSDERDFTQMIKAIKVRHNNVVPMMALGLQQLKKEMDPKIVYEDLHEIHQFLDRFYMSRIGIRML 548
            +K ++  +++S I+       ++ T   + Y    G      +LL SA++L +ELP+RIA R     +LP+ +   P +L V + Y+ +F+ L  FP I+  +DE  + Q+++ +   H +VV ++A GL++ +K +      ED   +  FLD+   SR+GIRML
Sbjct:   47 SKTVTSFYNQSAIDVAAEKPSVRLTPTMMLYS---GRSQDGSHLLKSARYLQQELPVRIAHRIKGFRSLPFIIGCNPTILHVHELYIRAFQKLTDFPPIKDQADEARYCQLVRQLLDDHKDVVTLLAEGLRESRKYI------EDEKLVRYFLDKTLTSRLGIRML 203          
BLAST of FC868868 vs. ExPASy Swiss-Prot
Match: PDK4_RAT ([Pyruvate dehydrogenase [lipoamide]] kinase isozyme 4, mitochondrial OS=Rattus norvegicus GN=Pdk4 PE=2 SV=1)

HSP 1 Score: 86.6557 bits (213), Expect = 1.396e-16
Identity = 52/144 (36.11%), Postives = 81/144 (56.25%), Query Frame = 3
Query:  129 VSLRYMMEFGSKPTDKNLLISAQFLHKELPIRIARRAIELETLPYGLSEKPAVLKVRDWYLDSFRDLRSFPDIRSTSDER---DFTQMIKAIKVRHNNVVPMMALGLQQLKKEMDPKIVYEDLHEIHQFLDRFYMSRIGIRMLI 551
            +S++ +++FGS+   +    S  FL +ELP+R+A    E++ LP  L   P+V  V+ WY+ S  DL  F + +S  D++   DF   +  ++ RH+NVVP MA G+ + K       V      +  FLDRFYM+RI  RML+
Sbjct:   35 LSMKQLLDFGSENACERTSFS--FLRQELPVRLANILKEIDILPEHLVNTPSVQLVKSWYIQSLMDLVEFHE-KSPEDQKVLSDFVDTLVKVRNRHHNVVPTMAQGILEYKDNCTVDPVTN--QNLQYFLDRFYMNRISTRMLM 173          
BLAST of FC868868 vs. ExPASy Swiss-Prot
Match: PDK4_MOUSE ([Pyruvate dehydrogenase [lipoamide]] kinase isozyme 4, mitochondrial OS=Mus musculus GN=Pdk4 PE=2 SV=1)

HSP 1 Score: 86.2705 bits (212), Expect = 1.823e-16
Identity = 58/175 (33.14%), Postives = 92/175 (52.57%), Query Frame = 3
Query:   39 AAMAAKKLSETFSKSLI-EEVGRWGCMKQTGVSLRYMMEFGSKPTDKNLLISAQFLHKELPIRIARRAIELETLPYGLSEKPAVLKVRDWYLDSFRDLRSFPDIRSTSDER---DFTQMIKAIKVRHNNVVPMMALGLQQLKKEMDPKIVYEDLHEIHQFLDRFYMSRIGIRMLI 551
            A    +  S   S SL+  EV  +     + +S++ +++FGS+   +    S  FL +ELP+R+A    E++ LP  L   P+V  V+ WY+ S  DL  F + +S  D++   +F   +  ++ RH+NVVP MA G+ + K       V      +  FLDRFYM+RI  RML+
Sbjct:    4 ARFVMRSASSLSSASLVPREVELFSRYSPSPLSMKQLLDFGSENACERT--SFAFLRQELPVRLANILKEIDILPDRLVNTPSVQLVKSWYIQSLMDLVEFHE-KSPEDQKALSEFVDTLVKVRNRHHNVVPTMAQGILEYKDTCTVDPVTN--QNLQYFLDRFYMNRISTRMLM 173          
BLAST of FC868868 vs. ExPASy Swiss-Prot
Match: BCKD_MOUSE ([3-methyl-2-oxobutanoate dehydrogenase [lipoamide]] kinase, mitochondrial OS=Mus musculus GN=Bckdk PE=1 SV=1)

HSP 1 Score: 86.2705 bits (212), Expect = 1.823e-16
Identity = 49/166 (29.52%), Postives = 90/166 (54.22%), Query Frame = 3
Query:   51 AKKLSETFSKSLIEEVGRWGCMKQTGVSLRYMMEFGSKPTDKNLLISAQFLHKELPIRIARRAIELETLPYGLSEKPAVLKVRDWYLDSFRDLRSFPDIRSTSDERDFTQMIKAIKVRHNNVVPMMALGLQQLKKEMDPKIVYEDLHEIHQFLDRFYMSRIGIRML 548
            +K ++  +++S I+       ++ T   + Y    G      +LL S ++L +ELP+RIA R     +LP+ +   P +L V + Y+ +F+ L  FP I+  +DE  + Q+++ +   H +VV ++A GL++ +K +      +D   +  FLD+   SR+GIRML
Sbjct:   47 SKTVTSFYNQSAIDVAAEKPSVRLTPTMMLYS---GRSQDGSHLLKSGRYLQQELPVRIAHRIKGFRSLPFIIGCNPTILHVHELYIRAFQKLTDFPPIKDQADEAQYCQLVRQLLDDHKDVVTLLAEGLRESRKHI------QDEKLVRYFLDKTLTSRLGIRML 203          
The following BLAST results are available for this feature:
BLAST of FC868868 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 20
Match NameE-valueIdentityDescription
PDK1_HUMAN7.400e-1838.19[Pyruvate dehydrogenase [lipoamide]] kinase isozym... [more]
PDK1_RAT1.262e-1737.50[Pyruvate dehydrogenase [lipoamide]] kinase isozym... [more]
PDK1_MOUSE1.262e-1737.50[Pyruvate dehydrogenase [lipoamide]] kinase isozym... [more]
BCKD_RAT2.812e-1730.72[3-methyl-2-oxobutanoate dehydrogenase [lipoamide]... [more]
BCKD_HUMAN3.673e-1730.72[3-methyl-2-oxobutanoate dehydrogenase [lipoamide]... [more]
PDK_DROME8.182e-1737.32[Pyruvate dehydrogenase [lipoamide]] kinase, mitoc... [more]
BCKD_BOVIN8.182e-1730.72[3-methyl-2-oxobutanoate dehydrogenase [lipoamide]... [more]
PDK4_RAT1.396e-1636.11[Pyruvate dehydrogenase [lipoamide]] kinase isozym... [more]
PDK4_MOUSE1.823e-1633.14[Pyruvate dehydrogenase [lipoamide]] kinase isozym... [more]
BCKD_MOUSE1.823e-1629.52[3-methyl-2-oxobutanoate dehydrogenase [lipoamide]... [more]

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Properties
Property NameValue
Genbank descriptionC31005G10EF AbioticL1 Citrus clementina cDNA clone C31005G10, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>FC868868 ID=FC868868; Name=FC868868; organism=Citrus clementina; type=EST; length=719bp
GGGAATTGGATTTTGTTGTGAGCAAGCAGAAGCCAGAAGCAGCAATGGCT
GCTAAGAAATTGTCGGAGACGTTTTCGAAGAGCTTGATCGAGGAGGTTGG
GCGATGGGGATGCATGAAACAGACAGGTGTGAGCTTGAGGTACATGATGG
AGTTTGGCTCAAAACCTACAGACAAGAATTTGCTAATTTCTGCTCAGTTT
CTTCACAAAGAGCTTCCAATTAGAATCGCCAGACGAGCAATTGAGCTCGA
GACACTTCCTTACGGTTTATCCGAGAAGCCTGCCGTTTTGAAGGTTCGAG
ACTGGTATTTGGACTCATTTCGTGATTTGAGGTCGTTTCCTGACATCAGA
AGTACGAGTGATGAGAGGGATTTTACGCAAATGATTAAGGCGATTAAGGT
GAGGCATAATAATGTGGTGCCCATGATGGCGTTGGGGCTGCAACAATTGA
AGAAAGAGATGGATCCCAAGATTGTTTACGAGGATCTTCATGAGATTCAT
CAGTTTCTGGATCGGTTTTACATGTCTAGGATCGGAATTCGTATGCTTAT
TGCTGGGCCTGAATATCTTGTGTGCACTTCAAATTTGGATGAAACTCAGG
GCAGCATGTAGAATTGCACAATCCCAACCCTCCACCTCATTGTATTGGCT
ACATAGACACAAAAATGTCTCCAGTGCAGGTTGCTAGGAATGCTAGTGAG
CATGCACATTGTGTTTGTC
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