FC868874

Overview
NameFC868874
Unique NameFC868874
TypeEST
OrganismCitrus clementina (Clementine)
Sequence length667
Libraries
Library NameType
AbioticL1cdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Alignments
Feature NameTypeLocationAnalysis
Ccv1_Contig14112 contig Ccv1_Contig14112:47..714. BLAST: Citrus Unigene V1 Contigs to Prunus persica proteins V1
Homology
BLAST of FC868874 vs. ExPASy Swiss-Prot
Match: USF_AQUPY (Protein usf OS=Aquifex pyrophilus GN=usf PE=4 SV=1)

HSP 1 Score: 81.2629 bits (199), Expect = 5.087e-15
Identity = 55/173 (31.79%), Postives = 84/173 (48.55%), Query Frame = 3
Query:  114 IQIQRDDTTFDAYVVG-KEDAPGIVVVQEWWGVDFEIKNHAVKISQL-NPGFKALIPDLYRGKVGLDTAEAQHLMSG-----LDWPGAVKDIHASVNWLKA---NGSKKVGVTGYCMGGALAIASSVLVPE-VDAVVSFYGVPPPELADPTQAKAPVQAHFGELDNFVGFSDV 599
            ++ +++      Y+   K   PG++V+ EWWG++  + N      +    GF A  PD Y GK   +  +A  LM+      +D   A+    ASV++LK       KKVGVTG+C GG L++  +   P+ +DA V FYG+P     D    K P+     E D FV   +V
Sbjct:    5 VEFEKNGVKVRGYIATPKWGGPGVIVIHEWWGLESPLSNIKEICDRFAQEGFVAFAPDFYEGKYADNPDDAGKLMTDMFENRMDKVDAI--FKASVDFLKECRYTSPKKVGVTGFCCGGTLSMYFAGKFPDLIDASVPFYGLPQITKIDAENIKVPIFFILAEKDEFVNNDEV 175          
BLAST of FC868874 vs. ExPASy Swiss-Prot
Match: DLHH_AQUAE (Putative carboxymethylenebutenolidase OS=Aquifex aeolicus GN=aq_1997 PE=3 SV=1)

HSP 1 Score: 74.3294 bits (181), Expect = 6.219e-13
Identity = 51/171 (29.82%), Postives = 83/171 (48.54%), Query Frame = 3
Query:  114 IQIQRDDTTFDAYVVGKEDA-PGIVVVQEWWGVDFEIKNHAVKISQL-NPGFKALIPDLYRGKVGLDTAEAQHLMSGL---DWPGAVKDIHASVNWLKA---NGSKKVGVTGYCMGGALAIASSVLVPE-VDAVVSFYGVPPPELADPTQAKAPVQAHFGELDNFVGFSDV 599
            ++ +++      Y+   + A P ++V  EWWG++  + N      +L + GF A  PD Y+G+   +  +A  LM+ +         +   ASV ++K       KKVG+TG+C GG LA+  +   PE VDA + FYG+P     +    K P+     E D FV   +V
Sbjct:    5 VEFEKNGVKVRGYIATPKWAGPAVLVFHEWWGLESPLSNIKEICDKLADEGFVAFAPDFYKGQYADNPDDAGKLMTEMFEKRMDEVDRIFQASVEFVKECRYTYPKKVGITGFCCGGTLAMYFAAKFPEMVDASLPFYGLPQLTQINAENIKVPIFFILAEKDEFVNNDEV 175          
BLAST of FC868874 vs. ExPASy Swiss-Prot
Match: YGHX_ECOLI (Putative uncharacterized protein yghX OS=Escherichia coli (strain K12) GN=yghX PE=5 SV=3)

HSP 1 Score: 66.2402 bits (160), Expect = 1.742e-11
Identity = 44/138 (31.88%), Postives = 75/138 (54.35%), Query Frame = 3
Query:  174 PGIVVVQEWWGVDFEIKNHAVKISQLNPGFKALIPDLYRGKVGL--DTAEAQHLMSGLDWPGAVKDIHASVNWLKA--NGSKKVGVTGYCMGGALAIASSVLVPEVDAVVSFYGVPPPELADPTQAKAPVQAHFGELD 575
            P +VVV E  G++  I++ A ++++   G+ AL PD      G   +  + + L   +D    + D  A++ +++     + KVG+TG+C GG ++ A++V  PE+   V FYG   P  AD  + +AP+  HF ELD
Sbjct:   82 PAVVVVHENRGLNPYIEDVARRVAKA--GYIALAPDGLSSVGGYPGNDDKGRELQQQVDPTNLMNDFFAAIEFMQRYPQATGKVGITGFCYGGGVSNAAAVAYPELACAVPFYGRQAP-TADVAKIEAPLLLHFAELD 216          

HSP 2 Score: 23.483 bits (49), Expect = 1.742e-11
Identity = 10/19 (52.63%), Postives = 12/19 (63.16%), Query Frame = 2
Query:  611 ALEEKLKASGXPYEVHIYP 667
            A E  LKA+   YE +IYP
Sbjct:  225 AYEAALKANNKVYEAYIYP 243          
The following BLAST results are available for this feature:
BLAST of FC868874 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 3
Match NameE-valueIdentityDescription
USF_AQUPY5.087e-1531.79Protein usf OS=Aquifex pyrophilus GN=usf PE=4 SV=1[more]
DLHH_AQUAE6.219e-1329.82Putative carboxymethylenebutenolidase OS=Aquifex a... [more]
YGHX_ECOLI1.742e-1131.88Putative uncharacterized protein yghX OS=Escherich... [more]
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Properties
Property NameValue
Genbank descriptionC31005H05EF AbioticL1 Citrus clementina cDNA clone C31005H05, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>FC868874 ID=FC868874; Name=FC868874; organism=Citrus clementina; type=EST; length=667bp
TGAGCAGATCAACTCCGCTTCTTAAGCCCTCTCTCGCAAGGACTCACTTT
CCCGCCGGTTATCGCTTTGCAGTCAGATCAATGGCAGACTCTGCAGCTTC
GCCCTTCAAGAAAATCCAGATTCAGAGAGATGATACTACTTTTGATGCAT
ATGTGGTTGGCAAAGAAGACGCCCCTGGGATTGTTGTAGTTCAGGAGTGG
TGGGGTGTTGATTTTGAGATCAAGAACCATGCTGTCAAAATCTCCCAACT
AAACCCTGGATTCAAGGCACTTATACCAGATTTATATCGGGGAAAGGTTG
GTTTGGATACTGCTGAAGCACAGCACTTGATGAGTGGTCTTGATTGGCCA
GGTGCTGTCAAGGATATCCACGCTTCAGTTAATTGGCTTAAGGCAAATGG
TTCCAAGAAGGTTGGCGTGACTGGATATTGCATGGGAGGTGCTCTCGCTA
TTGCAAGTTCTGTCTTAGTTCCTGAGGTTGATGCTGTTGTTTCATTTTAT
GGGGTTCCCCCACCTGAGCTCGCCGATCCTACCCAGGCTAAGGCACCTGT
TCAAGCTCATTTTGGGGAGCTTGACAATTTTGTTGGCTTTTCAGATGTGA
AACTGCCAAAGCATTGGAGGAAAAGCTGAAAGCATCTGGTGNTCCATATG
AGGTACATATTTATCCT
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