FC868909

Overview
NameFC868909
Unique NameFC868909
TypeEST
OrganismCitrus clementina (Clementine)
Sequence length695
Libraries
Library NameType
AbioticL1cdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of FC868909 vs. ExPASy Swiss-Prot
Match: Y3184_XANCP (UPF0189 protein XCC3184 OS=Xanthomonas campestris pv. campestris GN=XCC3184 PE=3 SV=1)

HSP 1 Score: 153.295 bits (386), Expect = 1.151e-36
Identity = 78/141 (55.32%), Postives = 96/141 (68.09%), Query Frame = 1
Query:  274 KGDITKWSVDGSSDAIVNPANERMLGGGGADGAIHRAAGPELREACCKVPEVRPEVRCPIGEARITPGFKLPASHVIHTVGPIY-DADSNPEASLRNAYKNSLSVAKENNIQYIAFTAISCGVYGYPYEEAAAVALSTVQE 693
            +GDIT+  VD     IVN ANE +LGGGG DGAIHRAAGP L EAC  +PEVRP VRCP GE RIT GF L A H+ HTVGP++ D   N    L N Y  SL +A++  +  IAF AISCG+YGYP  +AA +A++  ++
Sbjct:    7 QGDITQLDVD----VIVNAANESLLGGGGVDGAIHRAAGPRLLEACEALPEVRPGVRCPTGEIRITDGFDLKARHIFHTVGPVWRDGKHNEPEQLANCYWQSLKLAEQMMLHSIAFPAISCGIYGYPLYQAARIAVTETRD 143          
BLAST of FC868909 vs. ExPASy Swiss-Prot
Match: Y3343_XANAC (UPF0189 protein XAC3343 OS=Xanthomonas axonopodis pv. citri GN=XAC3343 PE=3 SV=2)

HSP 1 Score: 152.525 bits (384), Expect = 1.963e-36
Identity = 77/141 (54.61%), Postives = 96/141 (68.09%), Query Frame = 1
Query:  274 KGDITKWSVDGSSDAIVNPANERMLGGGGADGAIHRAAGPELREACCKVPEVRPEVRCPIGEARITPGFKLPASHVIHTVGPIY-DADSNPEASLRNAYKNSLSVAKENNIQYIAFTAISCGVYGYPYEEAAAVALSTVQE 693
            +GDIT+  VD     IVN ANE +LGGGG DGAIHRAAGP L EAC  +P+VRP VRCP GE RIT GF L A H+ HTVGP++ D   N    L N Y  SL +A++  +  IAF AISCG+YGYP  +AA +A++  ++
Sbjct:    7 QGDITELDVD----VIVNAANESLLGGGGVDGAIHRAAGPRLLEACEALPQVRPGVRCPTGEIRITDGFDLKARHIFHTVGPVWRDGRHNEPEQLANCYWQSLKLAEQMMLHSIAFPAISCGIYGYPLHQAARIAVTETRD 143          
BLAST of FC868909 vs. ExPASy Swiss-Prot
Match: Y4103_VIBPA (UPF0189 protein VPA0103 OS=Vibrio parahaemolyticus GN=VPA0103 PE=3 SV=1)

HSP 1 Score: 147.517 bits (371), Expect = 6.315e-35
Identity = 80/144 (55.56%), Postives = 98/144 (68.06%), Query Frame = 1
Query:  259 ALVIKKGDITKWSVDGSSDAIVNPANERMLGGGGADGAIHRAAGPELREACCKVPEVRPEVRCPIGEARITPGFKLPASHVIHTVGPIYDADSNPEASLRNAYKNSLSVAKENNIQYIAFTAISCGVYGYPYEEAAAVALSTVQ 690
            A+ + +GDIT   VD    AIVN AN RMLGGGG DGAIHRAAGP L  AC  V +V   +RCP G+ARIT    L A +VIH VGPIYD  ++P+  L +AY+ SL +A  N+ Q +A  AISCGVYGYP +EAA VA++  Q
Sbjct:    3 AISLVQGDITTAHVD----AIVNAANPRMLGGGGVDGAIHRAAGPALINACYAVDDV-DGIRCPFGDARITEAGNLNARYVIHAVGPIYDKFADPKTVLESAYQRSLDLALANHCQSVALPAISCGVYGYPPQEAAEVAMAVCQ 141          
BLAST of FC868909 vs. ExPASy Swiss-Prot
Match: Y2219_CHLTE (UPF0189 protein CT2219 OS=Chlorobium tepidum GN=CT2219 PE=3 SV=1)

HSP 1 Score: 139.813 bits (351), Expect = 1.317e-32
Identity = 76/141 (53.90%), Postives = 100/141 (70.92%), Query Frame = 1
Query:  274 KGDITKWSVDGSSDAIVNPANERMLGGGGADGAIHRAAGPELREACCKVPEVRPEVRCPIGEARITPGFKLPASHVIHTVGPIYDADSNPEAS-LRNAYKNSLSVAKENNIQYIAFTAISCGVYGYPYEEAAAVALSTVQE 693
            K DIT  +VD    AIVN AN  +LGGGG DGAIHRAAGP+L EAC      R    C  GEA+IT G++LPA+ VIHTVGP++   ++ EA  L + Y+NSL +A E++ + IAF +IS G+YGYP E+AAA+A++TV+E
Sbjct:   11 KADITSLTVD----AIVNAANTSLLGGGGVDGAIHRAAGPKLLEAC------RELGGCLTGEAKITKGYRLPATFVIHTVGPVWHGGNHGEAELLASCYRNSLKLAIEHHCRTIAFPSISTGIYGYPVEQAAAIAITTVRE 141          
BLAST of FC868909 vs. ExPASy Swiss-Prot
Match: Y3408_LACPL (UPF0189 protein lp_3408 OS=Lactobacillus plantarum GN=lp_3408 PE=3 SV=1)

HSP 1 Score: 138.658 bits (348), Expect = 2.934e-32
Identity = 76/139 (54.68%), Postives = 94/139 (67.63%), Query Frame = 1
Query:  277 GDITKWSVDGSSDAIVNPANERMLGGGGADGAIHRAAGPELREACCKVPEVRPEVRCPIGEARITPGFKLPASHVIHTVGPIYDADSNPEAS-LRNAYKNSLSVAKENNIQYIAFTAISCGVYGYPYEEAAAVALSTVQ 690
            GDITK +VD    AIVN AN  +LGGGG DGAIHRAAGP L  AC      RP   C  GEA+ITPGF+LPA +VIHT GP++    + E   L N+Y+NSL++A EN+ Q +AF +IS GVY +P   AA +AL T+Q
Sbjct:    9 GDITKMTVD----AIVNAANTSLLGGGGVDGAIHRAAGPALLAAC------RPLHGCATGEAKITPGFRLPAKYVIHTPGPVWQGGQHNELQLLANSYRNSLNLAAENHCQTVAFPSISTGVYHFPLSIAAPLALKTLQ 137          
BLAST of FC868909 vs. ExPASy Swiss-Prot
Match: Y3693_PSEAE (UPF0189 protein PA3693 OS=Pseudomonas aeruginosa GN=PA3693 PE=3 SV=1)

HSP 1 Score: 138.272 bits (347), Expect = 3.831e-32
Identity = 75/139 (53.96%), Postives = 95/139 (68.35%), Query Frame = 1
Query:  274 KGDITKWSVDGSSDAIVNPANERMLGGGGADGAIHRAAGPELREACCKVPEVRPEVRCPIGEARITPGFKLPASHVIHTVGPIYDADSNPEAS-LRNAYKNSLSVAKENNIQYIAFTAISCGVYGYPYEEAAAVALSTV 687
            +GDIT+ +VD    AIVN AN  +LGGGG DGAIHRAAG EL  AC      R    C  GEA+IT GF+LPA+HVIHTVGP++    N EA  L + Y+ SL++A++     +AF AISCG+YGYP E+AAA+A+  V
Sbjct:    8 QGDITRLAVD----AIVNAANSSLLGGGGVDGAIHRAAGAELVAAC------RLLHGCKTGEAKITRGFRLPAAHVIHTVGPVWRGGDNGEAELLASCYRRSLALAEQAGAASVAFPAISCGIYGYPLEQAAAIAVEEV 136          
BLAST of FC868909 vs. ExPASy Swiss-Prot
Match: Y334_RALSO (UPF0189 protein RSc0334 OS=Ralstonia solanacearum GN=RSc0334 PE=3 SV=1)

HSP 1 Score: 135.576 bits (340), Expect = 2.483e-31
Identity = 72/128 (56.25%), Postives = 92/128 (71.88%), Query Frame = 1
Query:  313 DAIVNPANERMLGGGGADGAIHRAAGPELREACCKVPEVRPEVRCPIGEARITPGFKLPASHVIHTVGPIYDADSNPEASLRNA-YKNSLSVAKENNIQYIAFTAISCGVYGYPYEEAAAVALSTVQE 693
            DAIVN AN  +LGGGG DGAIHRAAGPEL EAC      R    C  G+A+ITPGF LPA ++IHTVGPI+      EA+L  A Y+NSL++AK+++++ IAF  IS GVYG+P + AA +A+ TV+E
Sbjct:   21 DAIVNAANSALLGGGGVDGAIHRAAGPELLEAC------RALHGCRTGQAKITPGFLLPARYIIHTVGPIWRGGRQDEAALLAACYRNSLALAKQHDVRTIAFPCISTGVYGFPPQLAAPIAVRTVRE 142          
BLAST of FC868909 vs. ExPASy Swiss-Prot
Match: MACD2_XENLA (MACRO domain-containing protein 2 OS=Xenopus laevis GN=macrod2 PE=2 SV=1)

HSP 1 Score: 134.42 bits (337), Expect = 5.532e-31
Identity = 80/164 (48.78%), Postives = 100/164 (60.98%), Query Frame = 1
Query:  208 SSDQRSEEGHFKLSESAALVIKKGDITKWSVDGSSDAIVNPANERMLGGGGADGAIHRAAGPELREACCKVPEVRPEVRCPIGEARITPGFKLPASHVIHTVGPIYDADSNP--EASLRNAYKNSLSVAKENNIQYIAFTAISCGVYGYPYEEAAAVALSTVQE 693
            S D+  EE   K S    +   KGDIT+  VD    AIVN AN  +LGGGG DG IHRA+GP L   C      R    C  G+A+IT G++LPA +VIHTVGPI      P  +  L + Y +SL++A EN+I+ IAF  IS G+YGYP E AA VAL+TV+E
Sbjct:   52 SDDESPEEIQVKNSLCEKVSFYKGDITQLEVD----AIVNAANTSLLGGGGVDGCIHRASGPSLLAEC------RELGGCETGQAKITCGYELPAKYVIHTVGPIARGHITPNHKQDLASCYNSSLTLATENDIRTIAFPCISTGIYGYPNEPAANVALTTVKE 205          
BLAST of FC868909 vs. ExPASy Swiss-Prot
Match: MACD2_HUMAN (MACRO domain-containing protein 2 OS=Homo sapiens GN=MACROD2 PE=2 SV=1)

HSP 1 Score: 132.88 bits (333), Expect = 1.610e-30
Identity = 76/162 (46.91%), Postives = 97/162 (59.88%), Query Frame = 1
Query:  214 DQRSEEGHFKLSESAALVIKKGDITKWSVDGSSDAIVNPANERMLGGGGADGAIHRAAGPELREACCKVPEVRPEVRCPIGEARITPGFKLPASHVIHTVGPIYDADSNP--EASLRNAYKNSLSVAKENNIQYIAFTAISCGVYGYPYEEAAAVALSTVQE 693
            +   E    K S +  + + +GDIT   VD    AIVN AN  +LGGGG DG IHRAAGP      C + E R    C  G A+IT G+ LPA +VIHTVGPI     N   +  L N YK+SL + KENNI+ +AF  IS G+YG+P E AA +AL+T++E
Sbjct:   56 ENTQETSQVKKSLTEKVSLYRGDITLLEVD----AIVNAANASLLGGGGVDGCIHRAAGP------CLLAECRNLNGCDTGHAKITCGYDLPAKYVIHTVGPIARGHINGSHKEDLANCYKSSLKLVKENNIRSVAFPCISTGIYGFPNEPAAVIALNTIKE 207          
BLAST of FC868909 vs. ExPASy Swiss-Prot
Match: YMDB_SALTY (UPF0189 protein ymdB OS=Salmonella typhimurium GN=ymdB PE=3 SV=1)

HSP 1 Score: 130.954 bits (328), Expect = 6.117e-30
Identity = 75/148 (50.68%), Postives = 97/148 (65.54%), Query Frame = 1
Query:  253 SAALVIKKGDITKWSVDGSSDAIVNPANERMLGGGGADGAIHRAAGPELREACCKVPEVRPEVRCPIGEARITPGFKLPASHVIHTVGPIYDADSNPEAS-LRNAYKNSLSVAKENNIQYIAFTAISCGVYGYPYEEAAAVALSTVQE 693
            ++ L + +GDIT+ SVD    AIVN AN  ++GGGG DGAIHRAAGP L +AC  + + + E  C  G A ITP  KL A  VIHTVGP++    + EA  L  AY+N L +A+ N+ + IAF AIS GVYGYP  +AA VA+ TV +
Sbjct:    2 TSRLQVIQGDITQLSVD----AIVNAANASLMGGGGVDGAIHRAAGPALLDACKLIRQQQGE--CQTGHAVITPAGKLSAKAVIHTVGPVWRGGEHQEAELLEEAYRNCLLLAEANHFRSIAFPAISTGVYGYPRAQAAEVAVRTVSD 143          
The following BLAST results are available for this feature:
BLAST of FC868909 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 73
Match NameE-valueIdentityDescription
Y3184_XANCP1.151e-3655.32UPF0189 protein XCC3184 OS=Xanthomonas campestris ... [more]
Y3343_XANAC1.963e-3654.61UPF0189 protein XAC3343 OS=Xanthomonas axonopodis ... [more]
Y4103_VIBPA6.315e-3555.56UPF0189 protein VPA0103 OS=Vibrio parahaemolyticus... [more]
Y2219_CHLTE1.317e-3253.90UPF0189 protein CT2219 OS=Chlorobium tepidum GN=CT... [more]
Y3408_LACPL2.934e-3254.68UPF0189 protein lp_3408 OS=Lactobacillus plantarum... [more]
Y3693_PSEAE3.831e-3253.96UPF0189 protein PA3693 OS=Pseudomonas aeruginosa G... [more]
Y334_RALSO2.483e-3156.25UPF0189 protein RSc0334 OS=Ralstonia solanacearum ... [more]
MACD2_XENLA5.532e-3148.78MACRO domain-containing protein 2 OS=Xenopus laevi... [more]
MACD2_HUMAN1.610e-3046.91MACRO domain-containing protein 2 OS=Homo sapiens ... [more]
YMDB_SALTY6.117e-3050.68UPF0189 protein ymdB OS=Salmonella typhimurium GN=... [more]

Pages

back to top
Properties
Property NameValue
Genbank descriptionC31006D06EF AbioticL1 Citrus clementina cDNA clone C31006D06, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>FC868909 ID=FC868909; Name=FC868909; organism=Citrus clementina; type=EST; length=695bp
GAGTCAACAAATAGCACGCTTACAAGAAGACTGATACGATTTCTGTTACC
AGCAACGCAACTTCCCCAAGCTACTAATTCTTCAACTTTCCCGAAATCTA
GAACTTCAGTTTCTGACAACTCTCTCGCAACAAGAGCAAAGGCAAAGACG
ATCTCAGTTGGTGATCGTGGTGTTGGTGTTAGAGCTGTGAGTGTGACGAT
GTCGTTATCGAGTGATCAACGAAGCGAGGAGGGTCATTTCAAGTTGTCTG
AATCGGCCGCTCTAGTGATCAAGAAAGGTGATATCACTAAGTGGTCCGTC
GATGGTTCGTCTGATGCCATTGTTAATCCGGCCAACGAGAGAATGCTTGG
AGGTGGTGGTGCAGATGGAGCCATACATAGGGCTGCAGGACCAGAGCTCC
GAGAAGCTTGCTGTAAGGTTCCAGAAGTCCGACCTGAAGTTCGCTGTCCC
ATCGGAGAAGCACGAATTACTCCAGGTTTCAAGTTGCCTGCATCGCATGT
GATCCATACTGTTGGTCCTATCTATGATGCGGATAGTAATCCTGAAGCCT
CTCTGAGAAATGCATACAAGAACAGCTTGAGCGTGGCCAAAGAAAACAAC
ATTCAATACATTGCTTTTACTGCCATCTCATGTGGTGTATATGGATATCC
TTATGAGGAAGCAGCCGCGGTAGCTCTATCTACAGTCCAAGAATT
back to top